SNP Profiles of "HUALLAGA 15"   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1. _GC-01-025-2-02
GGGGTTAGCCTTCCTTCCGGCTATGGAA
2. _GC-01-025-2-02
GGGGTTAGCCTTCCTTCCGGCTATGGAA
3. _GC-01-025-2-02
GGGGTTAGCCTTCCTTCCGGCTATGGAA
4. _GC-01-025-2-02
GGGGTTAGCCTTCCTTCCGGCTATGGAA
5. _GC-01-025-2-02
GGGGTTAGCCTTCCTTCCGGCTATGGAA
6. _GC-01-025-2-02
GGGGTTAGCCTTCCTTCCGGCTATGGAA
7. _GC-01-025-2-02
GGGGTTAGCCTTCCTTCCGGCTATGGAA
8. _GC-01-025-2-02
GGGGTTAGCCTTCCTTCCGGCTATGGAA
9. _GC-01-025-2-02
GGGGTTAGCCTTCCTTCCGGCTATGGAA
10. _GC-01-025-2-02
GGGGTTAGCCTTCCTTCCGGCTATGGAA
11. _GC-01-025-2-02
GGGGTTAGCCTTCCTTCCGGCTATGGAA
12. _GC-01-025-2-02
GGGGTTAGCCTTCCTTCCGGCTATGGAA
13. _1202_2
GG___TT_______________CCGGCT______AA
14. _1202_3
GG___TT_______________CCGGCT______AA
15. _1202_5
GG___TT_______________CCGGCT______AA
16. _1202_9
GG___TT_______________CCGGCT______AA
17. _1202_10
GG___TT_______________CCGGCT______AA
18. _1202_11
GG___TT_______________CCGGCT______AA
19. _1202_12
GG___TT_______________CCGGCT______AA
20. _1202_14
GG___TT_______________CCGGCT______AA
21. _1202_1_>_FP
GG___TT_______________CCGGCT______AA
22. _1202_4_>_FP
GG___TT_______________CCGGCT______AA
23. _1202_6_>_FP
GG___TT_______________CCGGCT______AA
24. _1202_8_>_FP
GG___TT_______________CCGGCT______AA
25. _HUALLAGA_15
GG___TT_______________CCGGCT______AC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1. _GC-01-025-2-02
CGAGGGCCATAGGGAACTGGAGAACCAA
2. _GC-01-025-2-02
CGAGGGCCATAGGGAACTGGAGAACCAA
3. _GC-01-025-2-02
CGAGGGCCATAGGGAACTGGAGAACCAA
4. _GC-01-025-2-02
CGAGGGCCATAGGGAACTGGAGAACCAA
5. _GC-01-025-2-02
CGAGGGCCATAGGGAACTGGAGAACCAA
6. _GC-01-025-2-02
CGAGGGCCATAGGGAACTGGAGAACCAA
7. _GC-01-025-2-02
CGAGGGCCATAGGGAACTGGAGAACCAA
8. _GC-01-025-2-02
CGAGGGCCATAGGGAACTGGAGAACCAA
9. _GC-01-025-2-02
CGAGGGCCATAGGGAACTGGAGAACCAA
10. _GC-01-025-2-02
CGAGGGCCATAGGGAACTGGAGAACCAA
11. _GC-01-025-2-02
CGAGGGCCATAGGGAACTGGAGAACCAA
12. _GC-01-025-2-02
CGAGGGCCATAGGGAACTGGAGAACCAA
13. _1202_2
CGAG___CC_________AA______AG______AA
14. _1202_3
CGAG___CC_________AA______AG______AA
15. _1202_5
CGAG___CC_________AA______AG______AA
16. _1202_9
CGAG___CC_________AA______AG______AA
17. _1202_10
CGAG___CC_________AA______AG______AA
18. _1202_11
CGAG___CC_________AA______AG______AA
19. _1202_12
CGAG___CC_________AA______AG______AA
20. _1202_14
CGAG___CC_________AA______AG______AA
21. _1202_1_>_FP
CGAG___CC_________AA______AG______AA
22. _1202_4_>_FP
CGAG___CC_________AA______AG______AA
23. _1202_6_>_FP
CGAG___CC_________AA______AG______AA
24. _1202_8_>_FP
CGAG___CC_________AA______AG______AA
25. _HUALLAGA_15
CGAG___CC_________AA______AG______AA
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1. _GC-01-025-2-02
CCACCTAGGGGG___AACTAGCCAAAAAG
2. _GC-01-025-2-02
CCACCTAGGGGG___AACTAGCCAAAAAG
3. _GC-01-025-2-02
CCACCTAGGGGG___AACTAGCCAAAAAG
4. _GC-01-025-2-02
CCACCTAGGGGG___AACTAGCCAAAAAG
5. _GC-01-025-2-02
CCACCTAGGGGG___AACTAGCCAAAAAG
6. _GC-01-025-2-02
CCACCTAGGGGG___AACTAGCCAAAAAG
7. _GC-01-025-2-02
CCACCTAGGGGG___AACTAGCCAAAAAG
8. _GC-01-025-2-02
CCACCTAGGGGG___AACTAGCCAAAAAG
9. _GC-01-025-2-02
CCACCTAGGGGG___AACTAGCCAAAAAG
10. _GC-01-025-2-02
CCACCTAGGGGG___AACTAGCCAAAAAG
11. _GC-01-025-2-02
CCACCTAGGGGG___AACTAGCCAAAAAG
12. _GC-01-025-2-02
CCACCTAGGGGG___AACTAGCCAAAAAG
13. _1202_2
___ACCT___GG______AA______CCAA______
14. _1202_3
___ACCT___GG______AA______CCAA______
15. _1202_5
___ACCT___GG______AA______CCAA______
16. _1202_9
___ACCT___GG______AA______CCAA______
17. _1202_10
___ACCT___GG______AA______CCAA______
18. _1202_11
___ACCT___GG______AA______CCAA______
19. _1202_12
___ACCT___GG______AA______CCAA______
20. _1202_14
___ACCT___GG______AA______CCAA______
21. _1202_1_>_FP
___ACCT___GG______AA______CCAA______
22. _1202_4_>_FP
___ACCT___GG______AA______CCAA______
23. _1202_6_>_FP
___ACCT___GG______AA______CCAA______
24. _1202_8_>_FP
___ACCT___GG______AA______CCAA______
25. _HUALLAGA_15
___ACCT___GG___CCAA______CCAA______
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1. _GC-01-025-2-02
TTCCTTAGTTGGTTAAGGAAGGGGCTCC
2. _GC-01-025-2-02
TTCCTTAGTTGGTTAAGGAAGGGGCTCC
3. _GC-01-025-2-02
TTCCTTAGTTGGTTAAGGAAGGGGCTCC
4. _GC-01-025-2-02
TTCCTTAGTTGGTTAAGGAAGGGGCTCC
5. _GC-01-025-2-02
TTCCTTAGTTGGTTAAGGAAGGGGCTCC
6. _GC-01-025-2-02
TTCCTTAGTTGGTTAAGGAAGGGGCTCC
7. _GC-01-025-2-02
TTCCTTAGTTGGTTAAGGAAGGGGCTCC
8. _GC-01-025-2-02
TTCCTTAGTTGGTTAAGGAAGGGGCTCC
9. _GC-01-025-2-02
TTCCTTAGTTGGTTAAGGAAGGGGCTCC
10. _GC-01-025-2-02
TTCCTTAGTTGGTTAAGGAAGGGGCTCC
11. _GC-01-025-2-02
TTCCTTAGTTGGTTAAGGAAGGGGCTCC
12. _GC-01-025-2-02
TTCCTTAGTTGGTTAAGGAAGGGGCTCC
13. _1202_2
______TT_____________________GG___CT___
14. _1202_3
______TT_____________________GG___CT___
15. _1202_5
______TT_____________________GG___CT___
16. _1202_9
______TT_____________________GG___CT___
17. _1202_10
______TT_____________________GG___CT___
18. _1202_11
______TT_____________________GG___CT___
19. _1202_12
______TT_____________________GG___CT___
20. _1202_14
______TT_____________________GG___CT___
21. _1202_1_>_FP
______TT_____________________GG___CT___
22. _1202_4_>_FP
______TT_____________________GG___CT___
23. _1202_6_>_FP
______TT_____________________GG___CT___
24. _1202_8_>_FP
______TT_____________________GG___CT___
25. _HUALLAGA_15
______TT_____________________GG___CT___
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1. _GC-01-025-2-02
GGCCGGCCAACTAACCTTCGCCGGGGAT
2. _GC-01-025-2-02
GGCCGGCCAACTAACCTTCGCCGGGGAT
3. _GC-01-025-2-02
GGCCGGCCAACTAACCTTCGCCGGGGAT
4. _GC-01-025-2-02
GGCCGGCCAACTAACCTTCGCCGGGGAT
5. _GC-01-025-2-02
GGCCGGCCAACTAACCTTCGCCGGGGAT
6. _GC-01-025-2-02
GGCCGGCCAACTAACCTTCGCCGGGGAT
7. _GC-01-025-2-02
GGCCGGCCAACTAACCTTCGCCGGGGAT
8. _GC-01-025-2-02
GGCCGGCCAACTAACCTTCGCCGGGGAT
9. _GC-01-025-2-02
GGCCGGCCAACTAACCTTCGCCGGGGAT
10. _GC-01-025-2-02
GGCCGGCCAACTAACCTTCGCCGGGGAT
11. _GC-01-025-2-02
GGCCGGCCAACTAACCTTCGCCGGGGAT
12. _GC-01-025-2-02
GGCCGGCCAACTAACCTTCGCCGGGGAT
13. _1202_2
___CCGG___AACTAA_________CCGG___AT
14. _1202_3
___CCGG___AACTAA_________CCGG___AT
15. _1202_5
___CCGG___AACTAA_________CCGG___AT
16. _1202_9
___CCGG___AACTAA_________CCGG___AT
17. _1202_10
___CCGG___AACTAA_________CCGG___AT
18. _1202_11
___CCGG___AACTAA_________CCGG___AT
19. _1202_12
___CCGG___AACTAA_________CCGG___AT
20. _1202_14
___CCGG___AACTAA_________CCGG___AT
21. _1202_1_>_FP
___CCGG___AACTAA_________CCGG___AT
22. _1202_4_>_FP
___CCGG___AACTAA_________CCGG___AT
23. _1202_6_>_FP
___CCGG___AACTAA_________CCGG___AT
24. _1202_8_>_FP
___CCGG___AACTAA_________CCGG___AT
25. _HUALLAGA_15
___CCGG___AACTAA_________CCGG___AT
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1. _GC-01-025-2-02
CCGGTTCCTTCTCTGGCCGTTTTTCCGG
2. _GC-01-025-2-02
CCGGTTCCTTCTCTGGCCGTTTTTCCGG
3. _GC-01-025-2-02
CCGGTTCCTTCTCTGGCCGTTTTTCCGG
4. _GC-01-025-2-02
CCGGTTCCTTCTCTGGCCGTTTTTCCGG
5. _GC-01-025-2-02
CCGGTTCCTTCTCTGGCCGTTTTTCCGG
6. _GC-01-025-2-02
CCGGTTCCTTCTCTGGCCGTTTTTCCGG
7. _GC-01-025-2-02
CCGGTTCCTTCTCTGGCCGTTTTTCCGG
8. _GC-01-025-2-02
CCGGTTCCTTCTCTGGCCGTTTTTCCGG
9. _GC-01-025-2-02
CCGGTTCCTTCTCTGGCCGTTTTTCCGG
10. _GC-01-025-2-02
CCGGTTCCTTCTCTGGCCGTTTTTCCGG
11. _GC-01-025-2-02
CCGGTTCCTTCTCTGGCCGTTTTTCCGG
12. _GC-01-025-2-02
CCGGTTCCTTCTCTGGCCGTTTTTCCGG
13. _1202_2
_________CC______CT______GTTT___CC___
14. _1202_3
_________CC______CT______GTTT___CC___
15. _1202_5
_________CC______CT______GTTT___CC___
16. _1202_9
_________CC______CT______GTTT___CC___
17. _1202_10
_________CC______CT______GTTT___CC___
18. _1202_11
_________CC______CT______GTTT___CC___
19. _1202_12
_________CC______CT______GTTT___CC___
20. _1202_14
_________CC______CT______GTTT___CC___
21. _1202_1_>_FP
_________CC______CT______GTTT___CC___
22. _1202_4_>_FP
_________CC______CT______GTTT___CC___
23. _1202_6_>_FP
_________CC______CT______GTTT___CC___
24. _1202_8_>_FP
_________CC______CT______GTTT___CC___
25. _HUALLAGA_15
_________CC______CT______GTTT___CC___
 85 86 87 88 89 90 91 92 93 94 95    
1. _GC-01-025-2-02
CTCCTTGGAACCCCAACCGGCCX_XX_XX_X
2. _GC-01-025-2-02
CTCCTTGGAACCCCAACCGGCCX_XX_XX_X
3. _GC-01-025-2-02
CTCCTTGGAACCCCAACCGGCCX_XX_XX_X
4. _GC-01-025-2-02
CTCCTTGGAACCCCAACCGGCCX_XX_XX_X
5. _GC-01-025-2-02
CTCCTTGGAACCCCAACCGGCCX_XX_XX_X
6. _GC-01-025-2-02
CTCCTTGGAACCCCAACCGGCCX_XX_XX_X
7. _GC-01-025-2-02
CTCCTTGGAACCCCAACCGGCCX_XX_XX_X
8. _GC-01-025-2-02
CTCCTTGGAACCCCAACCGGCCX_XX_XX_X
9. _GC-01-025-2-02
CTCCTTGGAACCCCAACCGGCCX_XX_XX_X
10. _GC-01-025-2-02
CTCCTTGGAACCCCAACCGGCCX_XX_XX_X
11. _GC-01-025-2-02
CTCCTTGGAACCCCAACCGGCCX_XX_XX_X
12. _GC-01-025-2-02
CTCCTTGGAACCCCAACCGGCCX_XX_XX_X
13. _1202_2
CT___TTGGAACC_______________X_XX_XX_X
14. _1202_3
CT___TTGGAACC_______________X_XX_XX_X
15. _1202_5
CT___TTGGAACC_______________X_XX_XX_X
16. _1202_9
CT___TTGGAACC_______________X_XX_XX_X
17. _1202_10
CT___TTGGAACC_______________X_XX_XX_X
18. _1202_11
CT___TTGGAACC_______________X_XX_XX_X
19. _1202_12
CT___TTGGAACC_______________X_XX_XX_X
20. _1202_14
CT___TTGGAACC_______________X_XX_XX_X
21. _1202_1_>_FP
CT___TTGGAACC_______________X_XX_XX_X
22. _1202_4_>_FP
CT___TTGGAACC_______________X_XX_XX_X
23. _1202_6_>_FP
CT___TTGGAACC_______________X_XX_XX_X
24. _1202_8_>_FP
CT___TTGGAACC_______________X_XX_XX_X
25. _HUALLAGA_15
CT___TTGGAGCC_______________X_XX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._HUALLAGA_15 GC-01-025-2-02
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018
2._HUALLAGA_15 GC-01-025-2-02
Location: Tree: 2
Notes: 2
 Mars, 2018
3._HUALLAGA_15 GC-01-025-2-02
Location: Tree: 3
Notes: 3
 Mars, 2018
4._HUALLAGA_15 GC-01-025-2-02
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018
5._HUALLAGA_15 GC-01-025-2-02
Location: Tree: 5
Notes: 5
 Mars, 2018
6._HUALLAGA_15 GC-01-025-2-02
Location: Tree: 6
Notes: 6 > FP3
 Mars, 2018
7._HUALLAGA_15 GC-01-025-2-02
Location: Tree: 8
Notes: 8 > FP4
 Mars, 2018
8._HUALLAGA_15 GC-01-025-2-02
Location: Tree: 9
Notes: 9
 Mars, 2018
9._HUALLAGA_15 GC-01-025-2-02
Location: Tree: 10
Notes: 10
 Mars, 2018
10._HUALLAGA_15 GC-01-025-2-02
Location: Tree: 11
Notes: 11
 Mars, 2018
11._HUALLAGA_15 GC-01-025-2-02
Location: Tree: 12
Notes: 12
 Mars, 2018
12._HUALLAGA_15 GC-01-025-2-02
Location: Tree: 14
Notes: 14
 Mars, 2018
13._HUALLAGA_15
Location: 1202 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016
14._HUALLAGA_15
Location: 1202 3
 Dapeng Zhang, 2016
15._HUALLAGA_15
Location: 1202 5
 Dapeng Zhang, 2016
16._HUALLAGA_15
Location: 1202 9
 Dapeng Zhang, 2016
17._HUALLAGA_15
Location: 1202 10
 Dapeng Zhang, 2016
18._HUALLAGA_15
Location: 1202 11
 Dapeng Zhang, 2016
19._HUALLAGA_15
Location: 1202 12
 Dapeng Zhang, 2016
20._HUALLAGA_15
Location: 1202 14
 Dapeng Zhang, 2016
21._HUALLAGA_15
Location: 1202 1 > FP
 Dapeng Zhang, 2016
22._HUALLAGA_15
Location: 1202 4 > FP
 Dapeng Zhang, 2016
23._HUALLAGA_15
Location: 1202 6 > FP
 Dapeng Zhang, 2016
24._HUALLAGA_15
Location: 1202 8 > FP
 Dapeng Zhang, 2016

PERICT

25._HUALLAGA_15
 Dapeng Zhang, 2016

  Key to SNP Markers

1TcSNP25 2TcSNP28 3TcSNP32 4TcSNP42 5TcSNP60
6TcSNP75 7TcSNP90 8TcSNP122 9TcSNP144 10TcSNP150
11TcSNP151 12TcSNP154 13TcSNP174 14TcSNP193 15TcSNP226
16TcSNP230 17TcSNP240 18TcSNP242 19TcSNP316 20TcSNP329
21TcSNP364 22TcSNP372 23TcSNP413 24TcSNP418 25TcSNP429
26TcSNP430 27TcSNP448 28TcSNP469 29TcSNP521 30TcSNP529
31TcSNP534 32TcSNP547 33TcSNP560 34TcSNP561 35TcSNP577
36TcSNP591 37TcSNP602 38TcSNP606 39TcSNP619 40TcSNP645
41TcSNP653 42TcSNP689 43TcSNP701 44TcSNP702 45TcSNP723
46TcSNP731 47TcSNP751 48TcSNP776 49TcSNP799 50TcSNP823
51TcSNP836 52TcSNP860 53TcSNP872 54TcSNP878 55TcSNP891
56TcSNP894 57TcSNP899 58TcSNP917 59TcSNP929 60TcSNP944
61TcSNP953 62TcSNP994 63TcSNP998 64TcSNP999 65TcSNP1034
66TcSNP1041 67TcSNP1060 68TcSNP1062 69TcSNP1063 70TcSNP1075
71TcSNP1096 72TcSNP1111 73TcSNP1126 74TcSNP1144 75TcSNP1149
76TcSNP1156 77TcSNP1165 78TcSNP1175 79TcSNP1242 80TcSNP1253
81TcSNP1270 82TcSNP1309 83TcSNP1350 84TcSNP1383 85TcSNP1414
86TcSNP1439 87TcSNP1442 88TcSNP1458 89TcSNP1484 90TcSNP1520
91Tcm001s00947643 92Tcm002s20575712 93Tcm003s01336581 94Tcm003s07402719 95Tcm006s26664133