SNP Profiles of CATONGO View Data

Key

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
1._CATONGO___	GG	TT	AA	TT	CC	AA	CC	AA	CC	AA	GG	AA	CC	TT
2._CATONGO___	GG	TT	AA	TT	CC	AA	CC	AA	CC	AA	GG	AA	CC	TT
3._CATONGO___	GG	TT	AA	TT	CC	AA	CC	AA	CC	AA	GG	AA	CC	TT
4._CATONGO___	GG	TT	AA	TT	CC	AA	CC	AA	CC	AA	GG	AA	CC	TT
5._CATONGO___	GG	TT	AA	TT	CC	AA	CC	AA	CC	AA	GG	AA	CC	TT
6._CATONGO___	GG	TT	AA	TT	CC	AA	CC	AA	CC	AA	GG	AA	CC	TT
7._CATONGO___	GG	TT	AA	TT	CC	AA	CC	AA	CC	AA	GG	AA	CC	TT
8._CATONGO___	GG	TT	AA	TT	CC	AA	CC	AA	CC	AA	GG	AA	CC	TT
9._CATONGO___	GG	TT	AA	TT	CC	AA	CC	AA	CC	AA	GG	AA	___	TT
10._CATONGO___	GG	TT	AA	TT	CC	AA	CC	AA	CC	AA	GG	AA	CC	TT
11._CATONGO___	GG	TT	AA	TT	CC	AA	CC	AA	CC	AA	GG	AA	___	TT
12._CATONGO___	GG	TT	AC	TT	CC	AA	CC	AA	CC	AA	GG	AA	CC	TT
13._CATONGO___	GG	TT	AC	TT	CC	AA	CC	AA	CC	AA	GG	AA	CC	TT
14._CATONGO___	GG	TT	AC	TT	CC	AA	CC	AA	CC	AA	GG	AA	CC	TT
15._CATONGO___	GG	TT	AC	TT	CC	AA	CC	AA	CC	AA	GG	AA	CC	TT
16._CATONGO___	GG	TT	AC	TT	CC	AA	CC	AA	CC	AA	GG	AA	CC	TT
17._CATONGO___	GG	TT	AC	TT	CC	AA	CC	AA	CC	AA	GG	AA	CC	TT
18._CATONGO___	GG	TT	AC	TT	CC	AA	CC	AA	CC	AA	GG	AA	CC	TT
19._CATONGO___	GG	TT	AA	TT	CC	AA	CC	AA	CC	AA	GG	AA	CC	TT
20._CATONGO___	GG	TT	AA	TT	CC	AA	CC	AA	CC	AA	GG	AA	CC	TT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
1._CATONGO___	TT	CC	AA	TT	GG	GG	GG	CC	TT	CC	AA	TT	GG	CC
2._CATONGO___	TT	CC	AA	TT	GG	GG	GG	CC	TT	CC	AA	TT	GG	CC
3._CATONGO___	TT	CC	AA	TT	GG	GG	GG	CC	TT	CC	AA	TT	GG	CC
4._CATONGO___	TT	CC	AA	TT	GG	GG	GG	CC	___	CC	AA	TT	GG	CC
5._CATONGO___	TT	CC	AA	TT	GG	GG	GG	CC	TT	CC	AA	TT	GG	CC
6._CATONGO___	TT	CC	AA	TT	GG	GG	GG	CC	TT	CC	___	TT	GG	CC
7._CATONGO___	TT	CC	AA	TT	GG	GG	GG	CC	TT	CC	AA	TT	GG	CC
8._CATONGO___	TT	CC	AA	TT	GG	GG	GG	CC	TT	CC	AA	TT	GG	CC
9._CATONGO___	TT	CC	AA	TT	GG	GG	GG	CC	TT	CC	AA	TT	GG	CC
10._CATONGO___	TT	CC	AA	TT	GG	GG	GG	CC	TT	CC	AA	TT	GG	CC
11._CATONGO___	TT	CC	AA	TT	GG	GG	GG	CC	TT	CC	AA	TT	GG	CC
12._CATONGO___	TT	CC	AA	TT	GG	GG	GG	CC	TT	CC	AA	TT	GG	CC
13._CATONGO___	TT	CC	AA	TT	GG	GG	GG	CC	TT	CC	AA	TT	GG	CC
14._CATONGO___	TT	CC	AA	TT	GG	GG	GG	CC	TT	CC	AA	TT	GG	CC
15._CATONGO___	TT	CC	AA	TT	GG	GG	GG	CC	TT	CC	AA	TT	GG	CC
16._CATONGO___	TT	CC	AA	TT	GG	GG	GG	CC	TT	CC	AA	TT	GG	CC
17._CATONGO___	TT	CC	AA	TT	GG	GG	GG	CC	TT	CC	AA	TT	GG	CC
18._CATONGO___	TT	CC	AA	TT	GG	GG	GG	CC	TT	CC	AA	TT	GG	CC
19._CATONGO___	TT	CC	AA	TT	AA	GG	GG	CC	TT	CC	AA	TT	GG	CC
20._CATONGO___	TT	CC	AA	TT	AA	GG	GG	CC	TT	CC	AA	TT	GG	CC

	29	30	31	32	33	34	35	36	37	38	39	40
1._CATONGO___	AA	AA	TT	CC	TT	CC	AA	TT	CC	GG	GG	TT	X_X	X_X
2._CATONGO___	AA	AA	TT	CC	TT	CC	AA	TT	CC	GG	GG	TT	X_X	X_X
3._CATONGO___	AA	AA	TT	CC	TT	CC	AA	TT	CC	GG	GG	TT	X_X	X_X
4._CATONGO___	AA	AA	TT	CC	___	CC	AA	TT	CC	GG	GG	TT	X_X	X_X
5._CATONGO___	AA	AA	TT	CC	TT	CC	AA	TT	CC	GG	GG	TT	X_X	X_X
6._CATONGO___	AA	AA	TT	CC	TT	CC	AA	TT	CC	GG	GG	TT	X_X	X_X
7._CATONGO___	AA	AA	TT	CC	TT	CC	AA	TT	CC	GG	GG	TT	X_X	X_X
8._CATONGO___	AA	AA	TT	CC	___	CC	AA	TT	CC	GG	GG	TT	X_X	X_X
9._CATONGO___	AA	AA	TT	CC	___	CC	AA	TT	CC	GG	GG	TT	X_X	X_X
10._CATONGO___	AA	AA	TT	CC	TT	CC	AA	TT	CC	GG	GG	TT	X_X	X_X
11._CATONGO___	AA	AA	TT	CC	TT	CC	AA	TT	CC	GG	GG	TT	X_X	X_X
12._CATONGO___	AA	AA	TT	CC	TT	CC	AA	TT	TT	GG	GG	TT	X_X	X_X
13._CATONGO___	AA	AA	TT	CC	TT	CC	AA	TT	TT	GG	GG	TT	X_X	X_X
14._CATONGO___	AA	AA	TT	CC	TT	CC	AA	TT	TT	GG	GG	TT	X_X	X_X
15._CATONGO___	AA	AA	TT	CC	TT	CC	AA	TT	TT	GG	GG	TT	X_X	X_X
16._CATONGO___	AA	AA	TT	CC	TT	CC	AA	TT	TT	GG	GG	TT	X_X	X_X
17._CATONGO___	AA	AA	TT	CC	TT	CC	AA	TT	TT	GG	GG	TT	X_X	X_X
18._CATONGO___	AA	AA	TT	CC	TT	CC	AA	TT	TT	GG	GG	TT	X_X	X_X
19._CATONGO___	AA	AA	TT	CC	TT	CC	AA	TT	CC	GG	GG	TT	X_X	X_X
20._CATONGO___	AA	AA	TT	CC	TT	CC	AA	TT	CC	GG	GG	TT	X_X	X_X

Key

Mars Center for Cocoa Science Brazil

1._CATONGO

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Location: 8308 1

Dapeng Zhang, 2016

2._CATONGO

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Location: 8308 3

Dapeng Zhang, 2016

3._CATONGO

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Location: 8308 2 > FP

Dapeng Zhang, 2016

4._CATONGO

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Location: 8849 3

Dapeng Zhang, 2016

5._CATONGO

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Location: 8849 5

Dapeng Zhang, 2016

6._CATONGO

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Location: 8849 6

Dapeng Zhang, 2016

7._CATONGO

View Clone Any

Location: 8849 10

Dapeng Zhang, 2016

8._CATONGO

View Clone Any

Location: 8849 2 > FP

Dapeng Zhang, 2016

9._CATONGO

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Location: 8849 4 > FP

Dapeng Zhang, 2016

10._CATONGO

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Location: 8849 9 > FP

Dapeng Zhang, 2016

11._CATONGO

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Location: 8850 8

Dapeng Zhang, 2016

12._CATONGO

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Location: 8849 7

Dapeng Zhang, 2016

13._CATONGO

View Clone Any

Location: 8849 8 > FP

Dapeng Zhang, 2016

14._CATONGO

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Location: 8850 1

Dapeng Zhang, 2016

15._CATONGO

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Location: 8850 2

Dapeng Zhang, 2016

16._CATONGO

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Location: 8850 4

Dapeng Zhang, 2016

17._CATONGO

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Location: 8850 6

Dapeng Zhang, 2016

18._CATONGO

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Location: 8850 7

Dapeng Zhang, 2016

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE) Costa Rica

19._CATONGO

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Location: Cabiria

Dapeng Zhang, 2016

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

20._CATONGO

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Location: 6B D254 T1

Dapeng Zhang, 2016

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP226	8	TcSNP230	9	TcSNP242	10	TcSNP372
11	TcSNP429	12	TcSNP469	13	TcSNP529	14	TcSNP534	15	TcSNP560
16	TcSNP577	17	TcSNP591	18	TcSNP619	19	TcSNP645	20	TcSNP723
21	TcSNP872	22	TcSNP891	23	TcSNP917	24	TcSNP929	25	TcSNP953
26	TcSNP994	27	TcSNP998	28	TcSNP1060	29	TcSNP1062	30	TcSNP1075
31	TcSNP1144	32	TcSNP1165	33	TcSNP1253	34	TcSNP1270	35	TcSNP1350
36	TcSNP1414	37	TcSNP1442	38	TcSNP1458	39	TcSNP1484	40	TcSNP1520