SNP Profiles of CC 137   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1._CC 137___
______GGGG______AG______CCCTACCT___
2._CC 137___
______GGGGTT___AG______CCCTACCT___
3._CC 137___
______GGGGAT___GG______TTCCCCCT___
4._CC 137___
______GGGGTT___AG______CCCTACCT___
5._CC 137___
______GGGGTT___AG______CCCTACCT___
6._CC 137___
______GG_________________________________
7._CC 137___
______GG___TT___________________________
8._CC 137___
______GG___TT___________________________
9._CC 137___
______GG___TT___________________________
10._CC 137___
______GG___AT___________________________
11._CC 137___
______GG___TT___________________________
12._CC 137___
TTCC_________CT___CCTT____________GT
13._CC 137___
TTCC_________CT___CCTT____________GT
14._CC 137___
______GGCCTT___AG______GGAGACAG___
15._CC 137___
______________________________CTAC______
16._CC 137___
______GG___TT___________________________
17._CC 137___
______GGCCTT___AG______GGAGACAG___
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1._CC 137___
___CCGTCTATGG______AC___CCAAGGCT
2._CC 137___
___CCGTCTATGG______AC___CCAAGGCT
3._CC 137___
___ACGGCTATGG______AA___GGAGGGCC
4._CC 137___
___CCGTCTATGG______AC___CCAAGGCT
5._CC 137___
___CCGTCTATGG______AC___CCAAGGCT
6._CC 137___
___CCGTCT____________AC___CCAA___CT
7._CC 137___
___CCGTCT____________AC___CCAA___CT
8._CC 137___
___CCGTCT____________AC___CCAA___CT
9._CC 137___
___CCGTCT____________AC___CCAA___CT
10._CC 137___
___ACGGCT____________AA___GGAG___CC
11._CC 137___
___CCGT_______________AC______AA___CT
12._CC 137___
ATCC____________CTGG___GG___AA______
13._CC 137___
ATCC____________CTGG___GG___AA______
14._CC 137___
___CCACAGATGG______AC___GGAAGGAG
15._CC 137___
___CCGTCT___GG______AC___CCAA___CT
16._CC 137___
___CCGTCT____________AC___CCAA___CT
17._CC 137___
___CCACAGATGG______AC___GGAAGGAG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1._CC 137___
______ATAG___AGAACTAG___GGATCCAG
2._CC 137___
______ATAG___AGAACTAG___GGATCCAG
3._CC 137___
______AAAG___AGATCCAG___GGAACGAA
4._CC 137___
______ATAG___AGAACTAG___GGATCCAG
5._CC 137___
______ATAG___AGAACTAG___GGATCCAG
6._CC 137___
__________________AA_________GG______AG
7._CC 137___
__________________AA_________GG______AG
8._CC 137___
__________________AA_________GG______AG
9._CC 137___
__________________AA_________GG______AG
10._CC 137___
__________________AT_________GG______AA
11._CC 137___
______________________________GG______AG
12._CC 137___
TTAC___AGAA____________CC____________
13._CC 137___
TTAC___AGAA____________CC____________
14._CC 137___
______ATAG___AGAAAGAG___GGATGG___
15._CC 137___
_________AG___AGAA_______________CCAG
16._CC 137___
__________________AA_________GG______AG
17._CC 137___
______ATAG___AGAAAGAG___GGATGG___
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1._CC 137___
______CC___CCCT___GGTTAACC___CCCC
2._CC 137___
______CC___CCCT___GGTTAACC___CCCC
3._CC 137___
______AC___CCCT___GGGTAACC___CCCT
4._CC 137___
______CC___CCCT___GGTTAACC___CCCC
5._CC 137___
______CC___CCCT___GGTTAACC___CCCC
6._CC 137___
____________CCCT______TT___CC___CC___
7._CC 137___
____________CCCT______TT___CC___CC___
8._CC 137___
____________CCCT______TT___CC___CC___
9._CC 137___
____________CCCT______TT___CC___CC___
10._CC 137___
____________CCCT______GT___CC___CC___
11._CC 137___
____________CCCT______TT___CC_________
12._CC 137___
___CC___CTAC___GG_________CCTTCCCC
13._CC 137___
___CC___CTAC___GG_________CCTTCCCC
14._CC 137___
AG___CC___CC______GGAAAACC___CCGG
15._CC 137___
____________CC_________TT___CC___CCCC
16._CC 137___
____________CCCT______TT___CC___CC___
17._CC 137___
AG___CC___CC______GGAAAACC___CCGG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1._CC 137___
AGCT_________GGAA___AGTTCTGGGG___
2._CC 137___
AGCT_________GGAA___AGTTCTGGGG___
3._CC 137___
AGCC_________AAGG___AATTCCGTGG___
4._CC 137___
AGCT_________GGAA___AGTTCTGGGG___
5._CC 137___
AGCT_________GGAA___AGTTCTGGGG___
6._CC 137___
___CT_________GG_______________GG______
7._CC 137___
___CT_________GG_______________GG______
8._CC 137___
___CT_________GG_______________GG______
9._CC 137___
___CT_________GG_______________GG______
10._CC 137___
___CC_________AA_______________GT______
11._CC 137___
___CT_________AG_______________GG______
12._CC 137___
______TTAGCGAG___CG______TTGGGGCT
13._CC 137___
______TTAGCGAG___CG______TTGGGGCT
14._CC 137___
___AG____________GG___AA______CCGG___
15._CC 137___
___CT________________________TTGGGG___
16._CC 137___
___CT_________AG_______________GG______
17._CC 137___
___AG____________GG___AA______CCGG___
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1._CC 137___
GTTTGT___AC___GGAAGGCCCCCCAGTT
2._CC 137___
GTTTGT___AC___GGAAGGCCCCCCAGTT
3._CC 137___
TTGTGT___AC___GG___CCCGCCCCGGTT
4._CC 137___
GTTTGT___AC___GGAAGGCCCCCCAGTT
5._CC 137___
GTTTGT___AC___GGAAGGCCCCCCAGTT
6._CC 137___
________________________GG___CC______TT
7._CC 137___
________________________GG___CC______TT
8._CC 137___
________________________GG___CC______TT
9._CC 137___
________________________GG___CC______TT
10._CC 137___
________________________CC___CC______TT
11._CC 137___
________________________GG___CC______TT
12._CC 137___
_________CTACAATT___GG_________AG___
13._CC 137___
_________CTACAATT___GG_________AG___
14._CC 137___
ACAAAC___AC___CCAGCC___GGGGAGAA
15._CC 137___
______GT___AC_________GGCCCC___AA___
16._CC 137___
________________________GG___CC______TT
17._CC 137___
ACAAAC___AC___CCAGCC___GGGGAGAA
 85 86 87 88 89 90 91 92 93 94 95 96 97 98
1._CC 137___
GGCT___AACTAGTT______TTCC___CTAA
2._CC 137___
GGCT___AACTAGTT______TTCC___CTAA
3._CC 137___
GGCT___AACCAACT______CTCG___CTAA
4._CC 137___
GGCT___AACTAGTT______TTCC___CTAA
5._CC 137___
GGCT___AACTAGTT______TTCC___CTAA
6._CC 137___
GG______AACTAG__________________CTAA
7._CC 137___
GG______AACTAG__________________CTAA
8._CC 137___
GG______AACTAG__________________CTAA
9._CC 137___
GG______AACTAG__________________CTAA
10._CC 137___
GG______AACCAA__________________CTAA
11._CC 137___
GG______AACTAG__________________CTAA
12._CC 137___
______CC______AGTTTTAA______CC___AA
13._CC 137___
______CC______AGTTTTAA______CC___AA
14._CC 137___
GGAG___AAAGAG_________AA______AGAA
15._CC 137___
_______________AGTT_______________CT___
16._CC 137___
GG______AACTAG__________________CTAA
17._CC 137___
GGAG___AAAGAG_________AA______AGAA
 99 100 101 102 103 104 105 106 107 108 109 110 111 112
1._CC 137___
GTAACCAG___ATCTTTTTCTGT_________
2._CC 137___
GTAACCAG___ATCTTTTTCTGT_________
3._CC 137___
GGAACCAG___TTCTTTTTCCGT_________
4._CC 137___
GTAACCAG___ATCTTTTTCTGT_________
5._CC 137___
GTAACCAG___ATCTTTTTCTGT_________
6._CC 137___
___AA____________CT______CT____________
7._CC 137___
___AA____________CT______CT____________
8._CC 137___
___AA____________CT______CT____________
9._CC 137___
___AA____________CT______CT____________
10._CC 137___
___AA____________CT______CC____________
11._CC 137___
___AA____________CT______CT____________
12._CC 137___
____________TT___CT____________TTACCC
13._CC 137___
____________TT___CT____________TTACCC
14._CC 137___
ACAAGGAG_________AAAA___AC_________
15._CC 137___
GT______AG___AT________________________
16._CC 137___
___AA____________CT______CT____________
17._CC 137___
ACAAGGAG_________AAAA___AC_________
 113 114 115 116 117 118 119 120 121 122 123 124 125 126
1._CC 137___
CCTTCC______TTAAGG______TTCTCTCG
2._CC 137___
CCTTCC______TTAAGG______TTCTCTCG
3._CC 137___
ACGTCT______TTAAGG______TTCTCTGG
4._CC 137___
CCTTCC______TTAAGG______TTCTCTCG
5._CC 137___
CCTTCC______TTAAGG______TTCTCTCG
6._CC 137___
___TTCC_________AA_________TT___CTCG
7._CC 137___
___TTCC_________AA_________TT___CTCG
8._CC 137___
___TTCC_________AA_________TT___CTCG
9._CC 137___
___TTCC_________AA_________TT___CTCG
10._CC 137___
___GTCT_________AA_________TT___CTGG
11._CC 137___
___TT____________AA_________TT___CTGG
12._CC 137___
___TT___GGTT_________GGGG_________CG
13._CC 137___
___TT___GGTT_________GGGG_________CG
14._CC 137___
___AAGG______AGAAGG______AAAGAGCC
15._CC 137___
___TT_________CT_______________CTCTCG
16._CC 137___
___TTCC_________AA_________TT___CT___
17._CC 137___
___AAGG______AGAAGG______AAAGAGCC
 127 128 129 130 131 132 133 134 135      
1._CC 137___
AGCT______ACAGAAAAAAX_XX_XX_XX_XX_X
2._CC 137___
AGCT______ACAGAAAAAAX_XX_XX_XX_XX_X
3._CC 137___
GGCT______CCAGCCAGAAX_XX_XX_XX_XX_X
4._CC 137___
AGCT______ACAGAAAAAAX_XX_XX_XX_XX_X
5._CC 137___
AGCT______ACAGAAAAAAX_XX_XX_XX_XX_X
6._CC 137___
AGCT_____________________X_XX_XX_XX_XX_X
7._CC 137___
AGCT_____________________X_XX_XX_XX_XX_X
8._CC 137___
AGCT_____________________X_XX_XX_XX_XX_X
9._CC 137___
AGCT_____________________X_XX_XX_XX_XX_X
10._CC 137___
GGCT_____________________X_XX_XX_XX_XX_X
11._CC 137___
___________________________X_XX_XX_XX_XX_X
12._CC 137___
______CTAT_______________X_XX_XX_XX_XX_X
13._CC 137___
______CTAT_______________X_XX_XX_XX_XX_X
14._CC 137___
AGAG______AC___AAAAAAX_XX_XX_XX_XX_X
15._CC 137___
AG________________________X_XX_XX_XX_XX_X
16._CC 137___
AGCT_____________________X_XX_XX_XX_XX_X
17._CC 137___
AGAG______AC___AAAAAAX_XX_XX_XX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._CC_137 GC-01-134-7-11

Location: Tree: 1
Notes: 1
 Mars, 2018

2._CC_137 GC-01-134-7-11

Location: Tree: 2
Notes: 2
 Mars, 2018

3._CC_137 GC-01-134-7-11

Location: Tree: 4
Notes: 4
 Mars, 2018

4._CC_137 GC-01-134-7-11

Location: Tree: 5
Notes: 5
 Mars, 2018

5._CC_137 GC-01-134-7-11

Location: Tree: 6
Notes: 6
 Mars, 2018

6._CC_137

Location: 1711 1
 Dapeng Zhang, 2016

7._CC_137

Location: 1711 2
 Dapeng Zhang, 2016

8._CC_137

Location: 1711 5
 Dapeng Zhang, 2016

9._CC_137

Location: 1711 6
 Dapeng Zhang, 2016

10._CC_137

Location: 1711 4
 Dapeng Zhang, 2016

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE) Costa Rica

11._CC_137

Location: Cabiria
 Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

12._CC_137 RUQ 1637

 Lambert Motilal, 2023
Population Assignment: 

13._CC_137 RUQ 1637B

 Lambert Motilal, 2023

14._CC_137 RUQ 1637

Notes: Reading_Collection
 Mars, 2018

15._CC_137 RUQ 1637

 Dapeng Zhang, 2014

16._CC_137 RUQ 1637

 Dapeng Zhang, 2016

USDA-SHRS United States of America

17._CC_137 MITC-000809

 Mars, 2018

  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP25 4TcSNP28 5TcSNP32
6TcSNP33 7TcSNP42 8TcSNP49 9TcSNP52 10TcSNP60
11TcSNP75 12TcSNP90 13TcSNP122 14TcSNP131 15TcSNP143
16TcSNP144 17TcSNP150 18TcSNP151 19TcSNP154 20TcSNP174
21TcSNP176 22TcSNP189 23TcSNP193 24TcSNP194 25TcSNP226
26TcSNP230 27TcSNP240 28TcSNP242 29TcSNP290 30TcSNP305
31TcSNP316 32TcSNP329 33TcSNP363 34TcSNP364 35TcSNP372
36TcSNP413 37TcSNP418 38TcSNP421 39TcSNP429 40TcSNP430
41TcSNP448 42TcSNP469 43TcSNP497 44TcSNP519 45TcSNP521
46TcSNP522 47TcSNP529 48TcSNP534 49TcSNP546 50TcSNP547
51TcSNP560 52TcSNP561 53TcSNP577 54TcSNP589 55TcSNP591
56TcSNP602 57TcSNP606 58TcSNP619 59TcSNP640 60TcSNP642
61TcSNP644 62TcSNP645 63TcSNP653 64TcSNP660 65TcSNP689
66TcSNP701 67TcSNP702 68TcSNP723 69TcSNP731 70TcSNP739
71TcSNP751 72TcSNP776 73TcSNP799 74TcSNP800 75TcSNP823
76TcSNP835 77TcSNP836 78TcSNP860 79TcSNP872 80TcSNP878
81TcSNP891 82TcSNP894 83TcSNP899 84TcSNP917 85TcSNP929
86TcSNP944 87TcSNP945 88TcSNP953 89TcSNP994 90TcSNP998
91TcSNP999 92TcSNP1010 93TcSNP1019 94TcSNP1034 95TcSNP1041
96TcSNP1053 97TcSNP1060 98TcSNP1062 99TcSNP1063 100TcSNP1075
101TcSNP1096 102TcSNP1111 103TcSNP1112 104TcSNP1126 105TcSNP1144
106TcSNP1149 107TcSNP1156 108TcSNP1165 109TcSNP1175 110TcSNP1205
111TcSNP1230 112TcSNP1237 113TcSNP1242 114TcSNP1253 115TcSNP1270
116TcSNP1275 117TcSNP1293 118TcSNP1309 119TcSNP1350 120TcSNP1383
121TcSNP1401 122TcSNP1404 123TcSNP1414 124TcSNP1439 125TcSNP1442
126TcSNP1458 127TcSNP1484 128TcSNP1520 129TcSNP1524 130TcSNP1527
131Tcm001s00947643 132Tcm002s20575712 133Tcm003s01336581 134Tcm003s07402719 135Tcm006s26664133