SNP Profiles of EET 400 [ECU]   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1._EET 400 [ECU]___
GGGGTTGGCCTTCCTTAAGGCCTTGGAA
2._EET 400 [ECU]___
GGGGTTGGCCTTCCTTAAGGCCTTGGAA
3._EET 400 [ECU]___
GGGGATAGCCCTCCTTACGTCTTTAGCC
4._EET 400 [ECU]___
GGGGTTGGCCTTCCTTAAGGCTTTGGAA
5._EET 400 [ECU]___
GGGGTTGGCCTTCCTTAAGGCCTTGGAA
6._EET 400 [ECU]___
GGGGATAGCCCTCCTTACGTCTTTAGCC
7._EET 400 [ECU]___
GGGGTTGGCCTTCCTTAAGG___TTGGAA
8._EET 400 [ECU]___
GGGGATAGCCCTCCTTACGTCTTTAGCC
9._EET 400 [ECU]___
GG___AT_______________ACGTCT______CC
10._EET 400 [ECU]___
GG___AT_______________ACGTCT______CC
11._EET 400 [ECU]___
GG___AT_______________ACGTCT______CC
12._EET 400 [ECU]___
GG___TT_______________AAGGCC______AA
13._EET 400 [ECU]___
GG___TT_______________AAGGCT______AA
14._EET 400 [ECU]___
GG___TT_______________AAGGCC______AA
15._EET 400 [ECU]___
GG___TT_______________AAGGCC______AA
16._EET 400 [ECU]___
GG___TT_______________AAGG_________AA
17._EET 400 [ECU]___
GG___AT_______________ACGTCT______CC
18._EET 400 [ECU]___
GG___AT_______________ACGTCT______CC
19._EET 400 [ECU]___
_______________CTCC___ACGTCT______CC
20._EET 400 [ECU]___
GG___AT_______________ACGTCT______CC
21._EET 400 [ECU]___
GG___AT_______________ACGGCT______AC
22._EET 400 [ECU]___
CGCCATAAGGAGACAACCAAAAATGGCC
23._EET 400 [ECU]___
CGCCAAAGGGAGACAGACACAAATGGCC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1._EET 400 [ECU]___
CCGGGGCCAAGGGGAATTGGGGAACCAA
2._EET 400 [ECU]___
CCGGGGCCAAGGGGAATTGGGGAACCAA
3._EET 400 [ECU]___
CCAGGGCTATAGGGAACCGGGGATCGAG
4._EET 400 [ECU]___
CCGGGGCCAAGGGGAATTGGGGAACCAA
5._EET 400 [ECU]___
CCGGGGCCAAGGGGAATTGGGGAACCAA
6._EET 400 [ECU]___
CCAGGGCTATAGGGAACCGGGGATCGAG
7._EET 400 [ECU]___
CCGGGGCCAAGGGGAATTGGGGAACCAA
8._EET 400 [ECU]___
CCAGGGCTATAGGGAACCGGGGATCGAG
9._EET 400 [ECU]___
CCAG___CT_________AA______GG______AG
10._EET 400 [ECU]___
CCAG___CT_________AA______GG______AG
11._EET 400 [ECU]___
CCAG___CT_________AA______GG______AG
12._EET 400 [ECU]___
CCGG___CC_________AA______GG______AA
13._EET 400 [ECU]___
CCGG___CC_________AA______GG______AA
14._EET 400 [ECU]___
CCGG___CC_________AA______GG______AA
15._EET 400 [ECU]___
CCGG___CC_________AA______GG______AA
16._EET 400 [ECU]___
CCGG___CC_________AA______GG______AA
17._EET 400 [ECU]___
___AG___CC_________AA______GG______AG
18._EET 400 [ECU]___
CCAG___CT_________AA______GG______AG
19._EET 400 [ECU]___
CCAG___CT___AGGGAA____________CCAG
20._EET 400 [ECU]___
CCAG___CT_________AA______GG______AG
21._EET 400 [ECU]___
CCAA___CC_________AA______GG______AA
22._EET 400 [ECU]___
GGAGGGAGATAAGGAAGGAGAGATCG___
23._EET 400 [ECU]___
GGAGGGAGATGGGGAAGGAGAGATCC___
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1._EET 400 [ECU]___
___AACCCCAATTGGGGAACCAACCAAAA
2._EET 400 [ECU]___
___AACCCCAATTGGGGAACCAACCAAAA
3._EET 400 [ECU]___
___AAACCTGGGGGGGGACCCAGCTAAAA
4._EET 400 [ECU]___
___AACCCCAATTGGGGAACCAACCAAAA
5._EET 400 [ECU]___
___AACCCCAATTGGGGAACCAACCAAAA
6._EET 400 [ECU]___
___AAACCTGGGGGGGGACCCAGCTAAAA
7._EET 400 [ECU]___
___AACCCCAATTGGGGAACCAACCAAAA
8._EET 400 [ECU]___
___AAACCTGGGGGGGGACCCAGCTAAAA
9._EET 400 [ECU]___
______ACCT___GG___GGAC______CTAA___
10._EET 400 [ECU]___
______ACCT___GG___GGAC______CTAA___
11._EET 400 [ECU]___
______ACCT___GG___GGAC______CTAA___
12._EET 400 [ECU]___
______CCCC___TT___GGAA______CCAA___
13._EET 400 [ECU]___
______CCCC___TT___GGAA______CCAA___
14._EET 400 [ECU]___
______CCCC___TT___GGAA______CCAA___
15._EET 400 [ECU]___
______CCCC___TT___GGAA______CCAA___
16._EET 400 [ECU]___
______CCCC___TT___GGAA______CCAA___
17._EET 400 [ECU]___
______ACCT___GG___GGAC______CTAA___
18._EET 400 [ECU]___
______ACCT___GG___GGAC______CTAA___
19._EET 400 [ECU]___
______ACCT___GG___CGACCC___CT______
20._EET 400 [ECU]___
______ACCT___GG___GGAC______CTAA___
21._EET 400 [ECU]___
______ACCC___TT___GGCC______TTAA___
22._EET 400 [ECU]___
AAAAAC___AGCCGGCGACGG___AA___AA
23._EET 400 [ECU]___
AAACAC___AGCCGGCGACGG___AG___AA
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1._EET 400 [ECU]___
AATTCCGGGGTTGGTTCCGG___CGCCTT
2._EET 400 [ECU]___
AATTCCGGGGTTGGTTCCGG___CGCCTT
3._EET 400 [ECU]___
AATTCTGGAGTTGTTTACCG___CGCGCT
4._EET 400 [ECU]___
AATTCCGGGGTTGGTTCCGG___CGCCTT
5._EET 400 [ECU]___
AATTCCGGGGTTGGTTCCGG___CGCCTT
6._EET 400 [ECU]___
AATTCTGGAGTTGTTTACCG___CGCGCT
7._EET 400 [ECU]___
AATTCCGGGGTTGGTTCCGG___CGCCTT
8._EET 400 [ECU]___
AATTCTGGAGTTGTTTACCG___CGCGCT
9._EET 400 [ECU]___
_________GG_____________________CG___CT
10._EET 400 [ECU]___
_________GG_____________________CG___CT
11._EET 400 [ECU]___
_________GG_____________________CG___CT
12._EET 400 [ECU]___
_________GG_____________________CG___TT
13._EET 400 [ECU]___
_________GG_____________________CG___TT
14._EET 400 [ECU]___
_________GG_____________________CG___TT
15._EET 400 [ECU]___
_________GG_____________________CG___TT
16._EET 400 [ECU]___
_________GG_____________________CG___TT
17._EET 400 [ECU]___
_________GG_____________________CG___CT
18._EET 400 [ECU]___
_________GG_____________________CG___CT
19._EET 400 [ECU]___
______TTGGAG______TTAC______CGCCTT
20._EET 400 [ECU]___
_________GG_____________________CG___CT
21._EET 400 [ECU]___
_________GG_____________________GG___CC
22._EET 400 [ECU]___
AA______CCAGAACCAACCGGAGCC___AG
23._EET 400 [ECU]___
AG______ACAAAACCAACCGGAGGG___AG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1._EET 400 [ECU]___
CCGGTTGGCCAATTGGCCTTCCCCGGGG
2._EET 400 [ECU]___
CCGGTTGGCCAATTGGCCTTCCCCGGGG
3._EET 400 [ECU]___
CCGGCTCGCCAATTAACCTTCCCCGGGG
4._EET 400 [ECU]___
CCGGTTGGCCAATTGGCCTTCCCCGGGG
5._EET 400 [ECU]___
CCGGTTGGCCAATTGGCCTTCCCCGGGG
6._EET 400 [ECU]___
CCGGCTCGCCAATTAACCTTCCCCGGGG
7._EET 400 [ECU]___
CCGGTTGGCCAATTGGCCTTCCCCGGGG
8._EET 400 [ECU]___
CCGGCTCGCCAATTAACCTTCCCCGGGG
9._EET 400 [ECU]___
______CTCG___AATTAA_________CCGG___
10._EET 400 [ECU]___
______CTCG___AATTAA_________CCGG___
11._EET 400 [ECU]___
______CTCG___AATTAA_________CCGG___
12._EET 400 [ECU]___
______TTGG___AATTGG_________CCGG___
13._EET 400 [ECU]___
______TTGG___AATTGG_________CCGG___
14._EET 400 [ECU]___
______TTGG___AATTGG_________CCGG___
15._EET 400 [ECU]___
______TTGG___AATTGG_________CCGG___
16._EET 400 [ECU]___
______TTGG___AATTGG_________CCGG___
17._EET 400 [ECU]___
______CTCG___AATTAA_________CCGG___
18._EET 400 [ECU]___
______CTCG___AATTAA_________CCGG___
19._EET 400 [ECU]___
_____________________AACC______CC___GG
20._EET 400 [ECU]___
______CTCG___AATTAG_________CCGG___
21._EET 400 [ECU]___
______TTCG___AACTAG_________CCGG___
22._EET 400 [ECU]___
GGGGGGCCGGATAAAA___AA___GGGGCC
23._EET 400 [ECU]___
GGGGAGGGAGATAGAA___AA___GGGGCC
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1._EET 400 [ECU]___
AACCGGTTCCTTTTCCGGCCTTTTTT___
2._EET 400 [ECU]___
AACCGGTTCCTTTTCCGGCCTTTTTT___
3._EET 400 [ECU]___
AACCGGTTCCTTTTCTGTACGTTT___AA
4._EET 400 [ECU]___
AACCGGTTCCTTTTCCGGCCTTTTTT___
5._EET 400 [ECU]___
AACCGGTTCCTTTTCCGGCCTTTTTT___
6._EET 400 [ECU]___
AACCGGTTCCTTTTCTGTACGTTT___AA
7._EET 400 [ECU]___
AACCGGTTCCTTTTCCGGCCTTTTTT___
8._EET 400 [ECU]___
AACCGGTTCCTTTTCTGTACGTTT___AA
9._EET 400 [ECU]___
AA_________CC______CT______GTTT___AA
10._EET 400 [ECU]___
AA_________CC______CT______GTTT___AA
11._EET 400 [ECU]___
AA_________CC______CT______GTTT___AA
12._EET 400 [ECU]___
AA_________CC______CC______TTTT______
13._EET 400 [ECU]___
AA_________CC______CC______TTTT______
14._EET 400 [ECU]___
AA_________CC______CC______TTTT______
15._EET 400 [ECU]___
AA_________CC______CC______TTTT______
16._EET 400 [ECU]___
AA_________CC______CC______TTTT______
17._EET 400 [ECU]___
_____________________CT______GTTT___AC
18._EET 400 [ECU]___
AA_________CC______CT______GTTT___AC
19._EET 400 [ECU]___
______GGTT__________________GT___CC___
20._EET 400 [ECU]___
AA_________CC______CT______GTTT___AC
21._EET 400 [ECU]___
AA_________CC______CC______TTTT___CC
22._EET 400 [ECU]___
AAGGAG______AGAG___AC___ACAGGGAA
23._EET 400 [ECU]___
AAAGAG______AAAG___AA___ACAAGGCC
 85 86 87 88 89 90 91 92 93 94 95 96   
1._EET 400 [ECU]___
GGTTCCTTGGAACCCCAAAAAACCX_XX_X
2._EET 400 [ECU]___
GGTTCCTTGGAACCCCAAAAAACCX_XX_X
3._EET 400 [ECU]___
GGCTCCTTCCAGCCACAGACAGCCX_XX_X
4._EET 400 [ECU]___
GGTTCCTTGGAACCCCAAAAAACCX_XX_X
5._EET 400 [ECU]___
GGTTCCTTGGAACCCCAAAAAACCX_XX_X
6._EET 400 [ECU]___
GGCTCCTTCCAGCCACAGACAGCCX_XX_X
7._EET 400 [ECU]___
GGTTCCTTGGAACCCCAAAAAACCX_XX_X
8._EET 400 [ECU]___
GGCTCCTTCCAGCCACAGACAGCCX_XX_X
9._EET 400 [ECU]___
___CT___TTCCAGCC_______________X_XX_X
10._EET 400 [ECU]___
___CT___TTCCAGCC_______________X_XX_X
11._EET 400 [ECU]___
___CT___TTCCAGCC_______________X_XX_X
12._EET 400 [ECU]___
___TT___TTGGAACC_______________X_XX_X
13._EET 400 [ECU]___
___TT___TTGGAACC_______________X_XX_X
14._EET 400 [ECU]___
___TT___TTGGAACC_______________X_XX_X
15._EET 400 [ECU]___
___TT___TTGGAACC_______________X_XX_X
16._EET 400 [ECU]___
___TT___TTGGAACC_______________X_XX_X
17._EET 400 [ECU]___
_________TTCCAG__________________X_XX_X
18._EET 400 [ECU]___
___CT___TTCCAGCC_______________X_XX_X
19._EET 400 [ECU]___
______CCTTCCAG__________________X_XX_X
20._EET 400 [ECU]___
___CT___TTCCAGCC_______________X_XX_X
21._EET 400 [ECU]___
___TT___CCGGAGCC_______________X_XX_X
22._EET 400 [ECU]___
AGAGGGAGCGAAGGAC___CCGGACX_XX_X
23._EET 400 [ECU]___
GGAGGGAGCGAAGGAC___ACAGACX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._EET_400_[ECU] GC-01-066-4-02

Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._EET_400_[ECU] GC-01-066-4-02

Location: Tree: 2
Notes: 2
 Mars, 2018

3._EET_400_[ECU] GC-01-066-4-02

Location: Tree: 3
Notes: 3
 Mars, 2018

4._EET_400_[ECU] GC-01-066-4-02

Location: Tree: 5
Notes: 5
 Mars, 2018

5._EET_400_[ECU] GC-01-066-4-02

Location: Tree: 7
Notes: 7
 Mars, 2018

6._EET_400_[ECU] GC-01-066-4-02

Location: Tree: 9
Notes: 9
 Mars, 2018

7._EET_400_[ECU] GC-01-066-4-02

Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

8._EET_400_[ECU] GC-01-066-4-02

Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

9._EET_400_[ECU]

Location: 1402 3
 Dapeng Zhang, 2016

10._EET_400_[ECU]

Location: 1402 9
 Dapeng Zhang, 2016

11._EET_400_[ECU]

Location: 1402 13 > F
 Dapeng Zhang, 2016

12._EET_400_[ECU]

Location: 1402 2
 Dapeng Zhang, 2016

13._EET_400_[ECU]

Location: 1402 5
 Dapeng Zhang, 2016

14._EET_400_[ECU]

Location: 1402 7
 Dapeng Zhang, 2016

15._EET_400_[ECU]

Location: 1402 1 > FP
 Dapeng Zhang, 2016

16._EET_400_[ECU]

Location: 1402 10 > F
 Dapeng Zhang, 2016

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE) Costa Rica

17._EET_400_[ECU]

Location: Cabiria
 Dapeng Zhang, 2016

Estation Experimental Tropical Pichilingue Ecuador

18._EET_400_[ECU]

Location: OCHO CASAS #1
 Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

19._EET_400_[ECU] RUQ 760

 Dapeng Zhang, 2014

20._EET_400_[ECU] RUQ 760

 Dapeng Zhang, 2016

Malaysian Cocoa Board (MCB) Malaysia

21._EET_400_[ECU]

Location: Plot85/Trial II 2B
 Dapeng Zhang, 2016

USDA-SHRS United States of America

22._EET_400_[ECU] MITC-000396

 Mars, 2018

USDA-TARS United States of America

23._EET_400_[ECU] EET 400 [ECU]_Fld#_153_Plt#_2

Location: Field: 153, Tree: 2
 Mars, 2018

  Key to SNP Markers

1TcSNP25 2TcSNP28 3TcSNP32 4TcSNP42 5TcSNP60
6TcSNP75 7TcSNP90 8TcSNP122 9TcSNP144 10TcSNP150
11TcSNP151 12TcSNP154 13TcSNP174 14TcSNP193 15TcSNP226
16TcSNP230 17TcSNP240 18TcSNP242 19TcSNP316 20TcSNP329
21TcSNP364 22TcSNP372 23TcSNP413 24TcSNP418 25TcSNP429
26TcSNP430 27TcSNP448 28TcSNP469 29TcSNP497 30TcSNP521
31TcSNP529 32TcSNP534 33TcSNP547 34TcSNP560 35TcSNP561
36TcSNP577 37TcSNP591 38TcSNP602 39TcSNP606 40TcSNP619
41TcSNP645 42TcSNP653 43TcSNP689 44TcSNP701 45TcSNP702
46TcSNP723 47TcSNP731 48TcSNP751 49TcSNP776 50TcSNP799
51TcSNP823 52TcSNP836 53TcSNP860 54TcSNP872 55TcSNP878
56TcSNP891 57TcSNP894 58TcSNP899 59TcSNP917 60TcSNP929
61TcSNP944 62TcSNP953 63TcSNP994 64TcSNP998 65TcSNP999
66TcSNP1034 67TcSNP1041 68TcSNP1060 69TcSNP1062 70TcSNP1063
71TcSNP1075 72TcSNP1096 73TcSNP1111 74TcSNP1126 75TcSNP1144
76TcSNP1149 77TcSNP1156 78TcSNP1165 79TcSNP1175 80TcSNP1242
81TcSNP1253 82TcSNP1270 83TcSNP1309 84TcSNP1350 85TcSNP1383
86TcSNP1414 87TcSNP1439 88TcSNP1442 89TcSNP1458 90TcSNP1484
91TcSNP1520 92Tcm001s00947643 93Tcm002s20575712 94Tcm003s01336581 95Tcm003s07402719
96Tcm006s26664133