SNP Profiles of "ICS 6"   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1. _GC-08-049-1-60
______GGGGAT___AG______CTCTACCT___
2. _GC-08-049-1-60
______GGGGAT___AG______CTCTACCT___
3. _GC-08-049-1-60
______GGGGAT___AG______CTCTACCT___
4. _GC-08-049-1-60
______GGGGAT___AG______CTCTACCT___
5. _GC-08-049-1-60
______GGGGAT___AG______CTCTACCT___
6. _GC-08-049-1-60
______GGGGAT___AG______CTCTACCT___
7. _GC-08-049-1-60
______GGGGAT___AG______CTCTACCT___
8. _GC-08-049-1-60
______GGGGAT___AG______CTCTACCT___
9. _GC-08-49-1-60
______GGCCAT___AG______AGAGACAG___
10. _8160_1
______GG___AT___________________________
11. _8160_4
______GG___AT___________________________
12. _8160_5
______GG___AT___________________________
13. _8160_6
______GG___AT___________________________
14. _8160_8
______GG___AT___________________________
15. _8160_9
______GG___AT___________________________
16. _8160_11
______GG___AT___________________________
17. _8160_2_>_FP
______GG___AT___________________________
18. _RUQ_721
TTCC_________CC___ACTT____________TT
19. _RUQ_721
______GGCCAT___GG______AAAGACAG___
20. _RUQ_721
______________________________CTAC______
21. _RUQ_721
______GG___AT___________________________
22. _6B_E281_T2
______GG___AT___________________________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1. _GC-08-049-1-60
___ACGTCTATAG______AC___CGAGGGCT
2. _GC-08-049-1-60
___ACGTCTATAG______AC___CGAGGGCT
3. _GC-08-049-1-60
___ACGTCTATAG______AC___CGAGGGCT
4. _GC-08-049-1-60
___ACGTCTATAG______AC___CGAGGGCT
5. _GC-08-049-1-60
___ACGTCTATAG______AC___CG___GGCT
6. _GC-08-049-1-60
___ACGTCTATAG______AC___CGAGGGCT
7. _GC-08-049-1-60
___ACGTCTATAG______AC___CGAGGGCT
8. _GC-08-049-1-60
___ACGTCTATAG______AC___CGAGGGCT
9. _GC-08-49-1-60
___ACACAGATAG______AC___CGAGGGAG
10. _8160_1
___ACGTCT____________AC___CGAG___CT
11. _8160_4
___ACGTCT____________AC___CGAG___CT
12. _8160_5
___ACGTCT____________AC___CGAG___CT
13. _8160_6
___ACGTCT____________AC___CG______CT
14. _8160_8
___ACGTCT____________AC___CGAG___CT
15. _8160_9
___ACGTCT____________AC___CGAG___CT
16. _8160_11
___ACGTCT____________AC___CGAG___CT
17. _8160_2_>_FP
___ACGTCT____________AC___CGAG___CT
18. _RUQ_721
ATCC____________CTAG___TT___GG______
19. _RUQ_721
___CCACGGATGG______AA___GGGGGGGG
20. _RUQ_721
___CCGTCC___GG______AA___CCGG___CC
21. _RUQ_721
___CCGTCC____________AA___CCGG___CC
22. _6B_E281_T2
___CCGTCC____________AA______GG___CC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1. _GC-08-049-1-60
______ATAG___AGATCTAG___GGATCGAG
2. _GC-08-049-1-60
______ATAG___AGATCTAG___GGATCGAG
3. _GC-08-049-1-60
______ATAG___AGATCTAG___GGATCGAG
4. _GC-08-049-1-60
______ATAG___AGATCTAG___GGATCGAG
5. _GC-08-049-1-60
______ATAG___AGATCTAG___GGATCGAG
6. _GC-08-049-1-60
______ATAG___AGATCTAG___GGATCGAG
7. _GC-08-049-1-60
______ATAG___AGATCTAG___GGATCGAG
8. _GC-08-049-1-60
______ATAG___AGATCTAG___GGATCGAG
9. _GC-08-49-1-60
______ATAG___AGATAGAG___GGATCG___
10. _8160_1
__________________AT_________GG______AG
11. _8160_4
__________________AT_________GG______AG
12. _8160_5
__________________AT_________GG______AG
13. _8160_6
__________________AT_________GG______AG
14. _8160_8
__________________AT_________GG______AG
15. _8160_9
__________________AT_________GG______AG
16. _8160_11
__________________AT_________GG______AG
17. _8160_2_>_FP
__________________AT_________GG______AG
18. _RUQ_721
TTAA___GGAC____________CT____________
19. _RUQ_721
______TTGG___AGATAGGG___GGATCG___
20. _RUQ_721
_________GG___AGAT_______________CGAA
21. _RUQ_721
__________________AT_________GG______AA
22. _6B_E281_T2
__________________AT_________GG______AA
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1. _GC-08-049-1-60
______CC___CCCT___GGGTAACC___ACCC
2. _GC-08-049-1-60
______CC___CCCT___GGGTAACC___ACCC
3. _GC-08-049-1-60
______CC___CCCT___GGGTAACC___ACCC
4. _GC-08-049-1-60
______CC___CCCT___GGGTAACC___ACCC
5. _GC-08-049-1-60
______CC___CCCT___GGGTAACC___ACCC
6. _GC-08-049-1-60
______CC___CCCT___GGGTAACC___ACCC
7. _GC-08-049-1-60
______CC___CCCT___GGGTAACC___ACCC
8. _GC-08-049-1-60
______CC___CCCT___GGGTAACC___ACCC
9. _GC-08-49-1-60
AG___CC___CC______GGACAACC___ACGG
10. _8160_1
____________CCCT______GT___CC___AC___
11. _8160_4
____________CCCT______GT___CC___AC___
12. _8160_5
____________CCCT______GT___CC___AC___
13. _8160_6
____________CCCT______GT___CC___AC___
14. _8160_8
____________CCCT______GT___CC___AC___
15. _8160_9
____________CCCT______GT___CC___AC___
16. _8160_11
____________CCCT______GT___CC___AC___
17. _8160_2_>_FP
____________CCCT______GT___CC___AC___
18. _RUQ_721
___CC___CTCC___AG_________CCATACCC
19. _RUQ_721
AA___CC___CC______GGAAAACC___ACGG
20. _RUQ_721
____________CCCT______TT___CC___AACC
21. _RUQ_721
____________CCCT______TT___CC___AC___
22. _6B_E281_T2
____________CCCT______TT___CC___AC___
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1. _GC-08-049-1-60
AGCT_________GGAG___AGCTCTGTAG___
2. _GC-08-049-1-60
AGCT_________GGAG___AGCTCTGTAG___
3. _GC-08-049-1-60
AGCT_________GGAG___AGCTCTGTAG___
4. _GC-08-049-1-60
AGCT_________GGAG___AGCTCTGTAG___
5. _GC-08-049-1-60
AGCT_________GGAG___AGCTCTGTAG___
6. _GC-08-049-1-60
AGCT_________GGAG___AGCTCTGTAG___
7. _GC-08-049-1-60
AGCT_________GGAG___AGCTCTGTAG___
8. _GC-08-049-1-60
AGCT_________GGAG___AGCTCTGTAG___
9. _GC-08-49-1-60
___AG____________AG___AG______ACAG___
10. _8160_1
___CT_________GG_______________GT______
11. _8160_4
___CT_________GG_______________GT______
12. _8160_5
___CT_________GG_______________GT______
13. _8160_6
___CT_________GG_______________GT______
14. _8160_8
___CT_________GG_______________GT______
15. _8160_9
___CT_________GG_______________GT______
16. _8160_11
___CT_________GG_______________GT______
17. _8160_2_>_FP
___CT_________GG_______________GT______
18. _RUQ_721
______TTAACGAG___CG______TTGGGGCT
19. _RUQ_721
___AG____________AG___AG______CCGG___
20. _RUQ_721
___CT________________________TTGGGG___
21. _RUQ_721
___CT_________AG_______________GG______
22. _6B_E281_T2
___CT_________AG_______________GG______
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1. _GC-08-049-1-60
GTGTGT___CC___GGAACGCGCCCCGGTT
2. _GC-08-049-1-60
GTGTGT___CC___GGAACGCGCCCCGGTT
3. _GC-08-049-1-60
GTGTGT___CC___GGAACGCGCCCCGGTT
4. _GC-08-049-1-60
GTGTGT___CC___GGAACGCGCCCCGGTT
5. _GC-08-049-1-60
GTGTGT___CC___GGAACGCGCCCCGGTT
6. _GC-08-049-1-60
GTGTGT___CC___GGAACGCGCCCCGGTT
7. _GC-08-049-1-60
GTGTGT___CC___GGAACGCGCCCCGGTT
8. _GC-08-049-1-60
GTGTGT___CC___GGAACGCGCCCCGGTT
9. _GC-08-49-1-60
ACACAC___CC___CCAGCG___GGGGGGAA
10. _8160_1
________________________CG___CC______TT
11. _8160_4
________________________CG___CC______TT
12. _8160_5
________________________CG___CC______TT
13. _8160_6
________________________CG___CC______TT
14. _8160_8
________________________CG___CC______TT
15. _8160_9
________________________CG___CC______TT
16. _8160_11
________________________CG___CC______TT
17. _8160_2_>_FP
________________________CG___CC______TT
18. _RUQ_721
_________TTCCAATT___CC_________AG___
19. _RUQ_721
ACACAA___CC___CCAAGG___GGGGAGAA
20. _RUQ_721
______TT___CC_________CCCCCC_________
21. _RUQ_721
________________________CC___CC______TT
22. _6B_E281_T2
________________________CC___CC______TT
 85 86 87 88 89 90 91 92 93 94 95 96 97 98
1. _GC-08-049-1-60
GGCT___AACTAACT______CTCC___CTAA
2. _GC-08-049-1-60
GGCT___AACTAACT______CTCC___CTAA
3. _GC-08-049-1-60
GGCT___AACTAACT______CTCC___CTAA
4. _GC-08-049-1-60
GGCT___AACTAACT______CTCC___CTAA
5. _GC-08-049-1-60
GGCT___AACTAACT______CTCC___CTAA
6. _GC-08-049-1-60
GGCT___AACTAACT______CTCC___CTAA
7. _GC-08-049-1-60
GGCT___AACTAACT______CTCC___CTAA
8. _GC-08-049-1-60
GGCT___AACTAACT______CTCC___CTAA
9. _GC-08-49-1-60
GGAG___AAAGAA_________AG______AGAA
10. _8160_1
GG______AACTAA__________________CTAA
11. _8160_4
GG______AACTAA__________________CTAA
12. _8160_5
GG______AACTAA__________________CTAA
13. _8160_6
GG______AACTAA__________________CTAA
14. _8160_8
GG______AACTAA__________________CTAA
15. _8160_9
GG______AACTAA__________________CTAA
16. _8160_11
GG______AACTAA__________________CTAA
17. _8160_2_>_FP
GG______AACTAA__________________CTAA
18. _RUQ_721
______CG______AACTCTAT______CT___AA
19. _RUQ_721
GGAA___AAAGAA_________AG______GGAA
20. _RUQ_721
_______________AA__________________CC___
21. _RUQ_721
GG______AACTAA__________________CCAA
22. _6B_E281_T2
GG______AACTAA__________________CCAA
 99 100 101 102 103 104 105 106 107 108 109 110 111 112
1. _GC-08-049-1-60
GTAACCAG___ATCTTTTTCTGT______CC
2. _GC-08-049-1-60
GTAACCAG___ATCTTTTTCTGT______CC
3. _GC-08-049-1-60
GTAACCAG___ATCTTTTTCTGT______CC
4. _GC-08-049-1-60
GTAACCAG___ATCTTTTTCTGT______CC
5. _GC-08-049-1-60
GTAACCAG___ATCTTTTTCTGT______CC
6. _GC-08-049-1-60
GTAACCAG___ATCTTTTTCTGT______CC
7. _GC-08-049-1-60
GTAACCAG___ATCTTTTTCTGT______CC
8. _GC-08-049-1-60
GTAACCAG___ATCTTTTTCTGT______CC
9. _GC-08-49-1-60
ACAAGGAG_________AAAA___AC_________
10. _8160_1
___AA____________CT______CT____________
11. _8160_4
___AA____________CT______CT____________
12. _8160_5
___AA____________CT______CT____________
13. _8160_6
___AA____________CT______CT____________
14. _8160_8
___AA____________CT______CT____________
15. _8160_9
___AA____________CT______CT____________
16. _8160_11
___AA____________CT______CT____________
17. _8160_2_>_FP
___AA____________CT______CT____________
18. _RUQ_721
____________TT___TT____________GTAA___
19. _RUQ_721
AAAAGGAG_________AAAA___AC_________
20. _RUQ_721
TT______AG___AA________________________
21. _RUQ_721
___AA____________CT______CC____________
22. _6B_E281_T2
___TT_____________________CC____________
 113 114 115 116 117 118 119 120 121 122 123 124 125 126
1. _GC-08-049-1-60
GTCC______TTAAGG______TTCTCTCGAG
2. _GC-08-049-1-60
GTCC______TTAAGG______TTCTCTCGAG
3. _GC-08-049-1-60
GT_________TTAAGG______TTCTCTCGAG
4. _GC-08-049-1-60
GTCC______TTAAGG______TTCTCTCGAG
5. _GC-08-049-1-60
GTCC______TTAAGG______TTCTCTCGAG
6. _GC-08-049-1-60
GTCC______TTAAGG______TTCTCTCGAG
7. _GC-08-049-1-60
GTCC______TTAAGG______TTCTCTCGAG
8. _GC-08-049-1-60
GTCC______TTAAGG______TTCTCTCGAG
9. _GC-08-49-1-60
AAGG______AGAAGG______AAAGAGCCAG
10. _8160_1
GTCC_________AA_________TT___CTCGAG
11. _8160_4
GT____________AA_________TT___CTCGAG
12. _8160_5
GTCC_________AA_________TT___CTCGAG
13. _8160_6
GTCC_________AA_________TT___CTCGAG
14. _8160_8
GTCC_________AA_________TT___CTCGAG
15. _8160_9
GTCC_________AA_________TT___CTCGAG
16. _8160_11
GTCC_________AA_________TT___CTCGAG
17. _8160_2_>_FP
GTCC_________AA_________TT___CTCGAG
18. _RUQ_721
TT___TTTT_________GGGG_________CG___
19. _RUQ_721
AAGG______AAAAGG______AAAAAACCAA
20. _RUQ_721
TT_________TT_______________TTTTCGAA
21. _RUQ_721
TTCC_________AA_________CT___TTCGAG
22. _6B_E281_T2
TTCC_________AA_________TT___TTGGAA
 127 128 129 130 131 132 133 134       
1. _GC-08-049-1-60
CT______ACAGCCAGAAX_XX_XX_XX_XX_XX_X
2. _GC-08-049-1-60
CT______ACAGCCAGAAX_XX_XX_XX_XX_XX_X
3. _GC-08-049-1-60
CT______ACAGCCAGAAX_XX_XX_XX_XX_XX_X
4. _GC-08-049-1-60
CT______ACAGCCAGAAX_XX_XX_XX_XX_XX_X
5. _GC-08-049-1-60
CT______ACAGCCAGAAX_XX_XX_XX_XX_XX_X
6. _GC-08-049-1-60
CT______ACAGCCAGAAX_XX_XX_XX_XX_XX_X
7. _GC-08-049-1-60
CT______ACAGCCAGAAX_XX_XX_XX_XX_XX_X
8. _GC-08-049-1-60
CT______ACAGCCAGAAX_XX_XX_XX_XX_XX_X
9. _GC-08-49-1-60
AG______AC___CCAGAAX_XX_XX_XX_XX_XX_X
10. _8160_1
CT_____________________X_XX_XX_XX_XX_XX_X
11. _8160_4
CT_____________________X_XX_XX_XX_XX_XX_X
12. _8160_5
CT_____________________X_XX_XX_XX_XX_XX_X
13. _8160_6
CT_____________________X_XX_XX_XX_XX_XX_X
14. _8160_8
CT_____________________X_XX_XX_XX_XX_XX_X
15. _8160_9
CT_____________________X_XX_XX_XX_XX_XX_X
16. _8160_11
CT_____________________X_XX_XX_XX_XX_XX_X
17. _8160_2_>_FP
CT_____________________X_XX_XX_XX_XX_XX_X
18. _RUQ_721
___TTTT_______________X_XX_XX_XX_XX_XX_X
19. _RUQ_721
AA______CC___ACAGAAX_XX_XX_XX_XX_XX_X
20. _RUQ_721
________________________X_XX_XX_XX_XX_XX_X
21. _RUQ_721
________________________X_XX_XX_XX_XX_XX_X
22. _6B_E281_T2
TT_____________________X_XX_XX_XX_XX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._ICS_6 GC-08-049-1-60
Location: Tree: 1
Notes: 1
 Mars, 2018
2._ICS_6 GC-08-049-1-60
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018
3._ICS_6 GC-08-049-1-60
Location: Tree: 4
Notes: 4
 Mars, 2018
4._ICS_6 GC-08-049-1-60
Location: Tree: 5
Notes: 5
 Mars, 2018
5._ICS_6 GC-08-049-1-60
Location: Tree: 6
Notes: 6
 Mars, 2018
6._ICS_6 GC-08-049-1-60
Location: Tree: 8
Notes: 8
 Mars, 2018
7._ICS_6 GC-08-049-1-60
Location: Tree: 9
Notes: 9
 Mars, 2018
8._ICS_6 GC-08-049-1-60
Location: Tree: 11
Notes: 11
 Mars, 2018
9._ICS_6 GC-08-49-1-60
Location: Field: 8, Block: 1, Rep: 60, Tree: 2 > FP2
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018
10._ICS_6
Location: 8160 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016
11._ICS_6
Location: 8160 4
 Dapeng Zhang, 2016
12._ICS_6
Location: 8160 5
 Dapeng Zhang, 2016
13._ICS_6
Location: 8160 6
 Dapeng Zhang, 2016
14._ICS_6
Location: 8160 8
 Dapeng Zhang, 2016
15._ICS_6
Location: 8160 9
 Dapeng Zhang, 2016
16._ICS_6
Location: 8160 11
 Dapeng Zhang, 2016
17._ICS_6
Location: 8160 2 > FP
 Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

18._ICS_6 RUQ 721
 Lambert Motilal, 2023
19._ICS_6 RUQ 721
Notes: Reading_Collection
 Mars, 2018
20._ICS_6 RUQ 721
 Dapeng Zhang, 2014
21._ICS_6 RUQ 721
 Dapeng Zhang, 2016

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

22._ICS_6
Location: 6B E281 T2
 Dapeng Zhang, 2016

  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP25 4TcSNP28 5TcSNP32
6TcSNP33 7TcSNP42 8TcSNP49 9TcSNP52 10TcSNP60
11TcSNP75 12TcSNP90 13TcSNP122 14TcSNP131 15TcSNP143
16TcSNP144 17TcSNP150 18TcSNP151 19TcSNP154 20TcSNP174
21TcSNP176 22TcSNP189 23TcSNP193 24TcSNP194 25TcSNP226
26TcSNP230 27TcSNP240 28TcSNP242 29TcSNP290 30TcSNP305
31TcSNP316 32TcSNP329 33TcSNP363 34TcSNP364 35TcSNP372
36TcSNP413 37TcSNP418 38TcSNP421 39TcSNP429 40TcSNP430
41TcSNP448 42TcSNP469 43TcSNP497 44TcSNP519 45TcSNP521
46TcSNP522 47TcSNP529 48TcSNP534 49TcSNP546 50TcSNP547
51TcSNP560 52TcSNP561 53TcSNP577 54TcSNP589 55TcSNP591
56TcSNP602 57TcSNP606 58TcSNP619 59TcSNP640 60TcSNP642
61TcSNP644 62TcSNP645 63TcSNP653 64TcSNP660 65TcSNP689
66TcSNP701 67TcSNP702 68TcSNP723 69TcSNP731 70TcSNP739
71TcSNP751 72TcSNP776 73TcSNP799 74TcSNP800 75TcSNP823
76TcSNP835 77TcSNP836 78TcSNP860 79TcSNP872 80TcSNP878
81TcSNP891 82TcSNP894 83TcSNP899 84TcSNP917 85TcSNP929
86TcSNP944 87TcSNP945 88TcSNP953 89TcSNP994 90TcSNP998
91TcSNP999 92TcSNP1010 93TcSNP1019 94TcSNP1034 95TcSNP1041
96TcSNP1053 97TcSNP1060 98TcSNP1062 99TcSNP1063 100TcSNP1075
101TcSNP1096 102TcSNP1111 103TcSNP1112 104TcSNP1126 105TcSNP1144
106TcSNP1149 107TcSNP1156 108TcSNP1165 109TcSNP1175 110TcSNP1205
111TcSNP1230 112TcSNP1242 113TcSNP1253 114TcSNP1270 115TcSNP1275
116TcSNP1293 117TcSNP1309 118TcSNP1350 119TcSNP1383 120TcSNP1401
121TcSNP1404 122TcSNP1414 123TcSNP1439 124TcSNP1442 125TcSNP1458
126TcSNP1484 127TcSNP1520 128TcSNP1524 129TcSNP1527 130Tcm001s00947643
131Tcm002s20575712 132Tcm003s01336581 133Tcm003s07402719 134Tcm006s26664133