SNP Profiles of IMC 2   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1._IMC 2___
CGGGTTGGCCTTCCTTCCTTCTTTGGAC
2._IMC 2___
CGGGTTGGCCTTCCTTCCTTCTTTGGAC
3._IMC 2___
CGGGTTGGCCTTCCTTCCTTCTTTGGAC
4._IMC 2___
CGGGTTGGCCTTCCTTCCTTCTTTGGAC
5._IMC 2___
CGCCTTGGGGAACCAACCAAAGAAGGAC
6._IMC 2___
CG___TT_______________CCTTCT______AC
7._IMC 2___
CG___TT_______________CCTTCT______AC
8._IMC 2___
CG___TT_______________CCTTCT______AC
9._IMC 2___
CG___TT_______________CCTTCT______AC
10._IMC 2___
_______________TTCC___CCTTCT___GGAC
11._IMC 2___
CG___TT_______________CCTTCT______AC
12._IMC 2___
GG___TT_______________ACGTCT______AC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1._IMC 2___
CCAGGGCTAAAGGGATCCGGGGATCCAG
2._IMC 2___
CCAGGGCTAAAGGGATCCGGGGATCCAG
3._IMC 2___
CCAG___CTAAAGGGATCCGGGGATCCAG
4._IMC 2___
CCAGGGCTAAAGGGATCCGGGGATCCAG
5._IMC 2___
GGAGGGAGTTAGGGATGGGGGGATGG___
6._IMC 2___
CCAG___CT_________AT______GG______AG
7._IMC 2___
CCAG___CT_________AT______GG______AG
8._IMC 2___
CCAG___CT_________AT______GG______AG
9._IMC 2___
CCAG___CT_________AT______GG______AG
10._IMC 2___
CCAG___CT___AGGGAT____________CCAG
11._IMC 2___
CCAG___CT_________AT______AG______AG
12._IMC 2___
_________CT_________AA______GG______AA
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1._IMC 2___
___AAACCCAGGTGGGGACCTAGCCAAAA
2._IMC 2___
___AAACCCAGGTGGGGACCTAGCCAAAA
3._IMC 2___
___AAACCCAGGTGGGGACCTAGCCAAAA
4._IMC 2___
___AAACCCAGGTGGGGACCTAGCCAAAA
5._IMC 2___
GGAAAC___AGACGGCGACAG___GG___AA
6._IMC 2___
______ACCC___GT___GGAC______CCAA___
7._IMC 2___
______ACCC___GT___GGAC______CCAA___
8._IMC 2___
______ACCC___GT___GGAC______CCAA___
9._IMC 2___
______ACCC___GT___GGAC______CCAA___
10._IMC 2___
______ACCC___GT___CGACCT___CC______
11._IMC 2___
______ACCC___GT___GGAC______CCAA___
12._IMC 2___
______CCCT___GG___GGAA______CCAA___
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1._IMC 2___
AATTCCGTGGTTGTTTACCGAACCCCTT
2._IMC 2___
AATTCCGTGGTTGTTTACCGAACCCCTT
3._IMC 2___
AATTCCGTGGTTGTTTACCGAACCCCTT
4._IMC 2___
AATTCCGTGGTTGTTTACCGAACCCCTT
5._IMC 2___
AA______ACGGAAACAAACCGAGGG___AA
6._IMC 2___
_________GT_____________________CC___TT
7._IMC 2___
_________GT_____________________CC___TT
8._IMC 2___
_________GT_____________________CC___TT
9._IMC 2___
_________GT_____________________CC___TT
10._IMC 2___
______TTGTGG______TTAC______CCCCTT
11._IMC 2___
_________GT_____________________CC___CT
12._IMC 2___
_________GG_____________________CC___TT
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1._IMC 2___
CCGGCCGGCCATTTAACCTTCGCC___GG
2._IMC 2___
CCGGCCGGCCATTTAACCTTCGCCGGGG
3._IMC 2___
CCGGCCGGCCATTTAACCTTCGCCGGGG
4._IMC 2___
CCGGCCGGCCATTTAACCTTCGCCGGGG
5._IMC 2___
GGGGGGGGGGATAAAA___AA___GGGGCC
6._IMC 2___
______CCGG___ATTTAA_________CC______
7._IMC 2___
______CCGG___ATTTAA_________CCGG___
8._IMC 2___
______CCGG___ATTTAA_________CCGG___
9._IMC 2___
______CCGG___ATTTAA_________CCGG___
10._IMC 2___
_____________________AACC______CC___GG
11._IMC 2___
______CCGG___ATTTAA_________CCGG___
12._IMC 2___
______CC______AATTAA_________CCGG___
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1._IMC 2___
AACCGGTTCCTTCCCCGGCCTTTTTTCC
2._IMC 2___
AACCGGTTCCTTCC___GGCCTTTTTTCC
3._IMC 2___
AACCGGTTCCTTCCCCGGCCTTTTTTCC
4._IMC 2___
AACCGGTTCCTTCCCCGGCCTTTTTTCC
5._IMC 2___
AAGGGG______AAGG___CC___AAAAAGCC
6._IMC 2___
AA_________CC______CC______TTTT___CC
7._IMC 2___
AA_________CC______CC______TTTT___CC
8._IMC 2___
AA_________CC_______________TTTT___CC
9._IMC 2___
AA_________CC______CC______TTTT___CC
10._IMC 2___
______GGTT__________________TT___CT___
11._IMC 2___
AA_________CC______CC______TTTT___CC
12._IMC 2___
AA__________________CC______GGTT___CC
 85 86 87 88 89 90 91 92 93 94 95 96   
1._IMC 2___
GGCTCCTTGGAGCCACAAACAGACX_XX_X
2._IMC 2___
GGCTCCTTGGAGCCACAAACAGACX_XX_X
3._IMC 2___
GGCTCCTTGGAGCCACAAACAGACX_XX_X
4._IMC 2___
GGCTCCTTGGAGCCACAAACAGACX_XX_X
5._IMC 2___
GGAGGGAACCAGGGAC___ACAGACX_XX_X
6._IMC 2___
___CT___TTGGAGCC_______________X_XX_X
7._IMC 2___
___CT___TTGGAGCC_______________X_XX_X
8._IMC 2___
___CT___TTGGAGCC_______________X_XX_X
9._IMC 2___
___CT___TTGGAGCC_______________X_XX_X
10._IMC 2___
______CCTTGGAG__________________X_XX_X
11._IMC 2___
___CT___TTGGAGCC_______________X_XX_X
12._IMC 2___
_________TTCGAG__________________X_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._IMC_2 GC-04-042-3-06

Location: Tree: 1
Notes: 1
 Mars, 2018

2._IMC_2 GC-04-042-3-06

Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

3._IMC_2 GC-04-042-3-06

Location: Tree: 5
Notes: 5 > FP1
 Mars, 2018

4._IMC_2 GC-04-042-3-06

Location: Tree: 8
Notes: 8
 Mars, 2018

5._IMC_2 GC-04-42-3-6

Location: Field: 4, Block: 3, Rep: 6, Tree: 4
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

6._IMC_2

Location: 4306 1
 Dapeng Zhang, 2016

7._IMC_2

Location: 4306 8
 Dapeng Zhang, 2016

8._IMC_2

Location: 4306 4 > FP
 Dapeng Zhang, 2016

9._IMC_2

Location: 4306 5 > FP
 Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

10._IMC_2 RUQ 828

 Dapeng Zhang, 2014

11._IMC_2 RUQ 828

 Dapeng Zhang, 2016

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

12._IMC_2

Location: 6B A41 T8
 Dapeng Zhang, 2016

  Key to SNP Markers

1TcSNP25 2TcSNP28 3TcSNP32 4TcSNP42 5TcSNP60
6TcSNP75 7TcSNP90 8TcSNP122 9TcSNP144 10TcSNP150
11TcSNP151 12TcSNP154 13TcSNP174 14TcSNP193 15TcSNP226
16TcSNP230 17TcSNP240 18TcSNP242 19TcSNP316 20TcSNP329
21TcSNP364 22TcSNP372 23TcSNP413 24TcSNP418 25TcSNP429
26TcSNP430 27TcSNP448 28TcSNP469 29TcSNP497 30TcSNP521
31TcSNP529 32TcSNP534 33TcSNP547 34TcSNP560 35TcSNP561
36TcSNP577 37TcSNP591 38TcSNP602 39TcSNP606 40TcSNP619
41TcSNP645 42TcSNP653 43TcSNP689 44TcSNP701 45TcSNP702
46TcSNP723 47TcSNP731 48TcSNP751 49TcSNP776 50TcSNP799
51TcSNP823 52TcSNP836 53TcSNP860 54TcSNP872 55TcSNP878
56TcSNP891 57TcSNP894 58TcSNP899 59TcSNP917 60TcSNP929
61TcSNP944 62TcSNP953 63TcSNP994 64TcSNP998 65TcSNP999
66TcSNP1034 67TcSNP1041 68TcSNP1060 69TcSNP1062 70TcSNP1063
71TcSNP1075 72TcSNP1096 73TcSNP1111 74TcSNP1126 75TcSNP1144
76TcSNP1149 77TcSNP1156 78TcSNP1165 79TcSNP1175 80TcSNP1242
81TcSNP1253 82TcSNP1270 83TcSNP1309 84TcSNP1350 85TcSNP1383
86TcSNP1414 87TcSNP1439 88TcSNP1442 89TcSNP1458 90TcSNP1484
91TcSNP1520 92Tcm001s00947643 93Tcm002s20575712 94Tcm003s01336581 95Tcm003s07402719
96Tcm006s26664133