SNP Profiles of IMC 20   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1._IMC 20___
CT_________TT___CCGG____________TTAA
2._IMC 20___
___GGCCTT___GG______GGAACCAA______
3._IMC 20___
___________________________TTCC_________
4._IMC 20___
___GGCCTT___GG______GGAACCAA______
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1._IMC 20___
AC____________CTGG___GG___AG______TT
2._IMC 20___
ACACAGATGG______AC___CGAGGGAG___
3._IMC 20___
ACGTCT____________AC___CGAG___CT___
4._IMC 20___
ACACAGATGG______AC___CGAGGGAG___
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1._IMC 20___
AA___GGAA____________CC_______________
2._IMC 20___
___TTGG___GGAAAGAG___GGATGG___AG
3._IMC 20___
______GG___GGAA_______________CCAA___
4._IMC 20___
___TTGG___GGAAAGAG___GGATGG___AG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1._IMC 20___
AA___CCAC___AA_________GGATACCT___
2._IMC 20___
___AA___AC______AGCCGGCG___ACAGGG
3._IMC 20___
_________ACCC______GG___CG___ACCTCC
4._IMC 20___
___AA___AC______AGCCGGCG___ACAGGG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1._IMC 20___
TTAGCCAA___CG___TTGGGGCC_________
2._IMC 20___
____________AA___AA___CCGG___AAACAA
3._IMC 20___
_____________________TTGGGG_________TT
4._IMC 20___
____________AA___AA___CCGG___AAACAA
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1._IMC 20___
TTCCAATT___CC_________GG_________CG
2._IMC 20___
___CC___CGGGGG___GGGGGGGGGGGG___
3._IMC 20___
___CC_________CCCCCC__________________
4._IMC 20___
___CC___CGGGGG___GGGGGGGGGGGG___
 85 86 87 88 89 90 91 92 93 94 95 96 97 98
1._IMC 20___
______AACCCCAA___CC___GG____________
2._IMC 20___
ATAAAA_________AA___AGGGCCAAGGGG
3._IMC 20___
______AACC____________CT___GG______GG
4._IMC 20___
ATAAAA_________AA___AGGGCCAAGGGG
 99 100 101 102 103 104 105 106 107 108 109 110 111 112
1._IMC 20___
CT___CC_________GTAAGT___GTAT______
2._IMC 20___
_________AAGGCC______AAAA______AGCC
3._IMC 20___
___TT__________________GT_________CT___
4._IMC 20___
_________AAGGCC______AAAA______AGCC
 113 114 115 116 117 118 119 120 121 122 123 124 125 126
1._IMC 20___
___AGGG_________GG______TTAT_________
2._IMC 20___
GG______AGGGAACCAGGG______ACAAAA
3._IMC 20___
____________CCTTGGAG__________________
4._IMC 20___
GG______AGGGAACCAGGG______ACAAAA
 127              
1._IMC 20___
___X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._IMC 20___
ACX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._IMC 20___
___X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._IMC 20___
ACX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

 Key

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

1._IMC_20 RUQ 985

 Lambert Motilal, 2023
Population Assignment: 

2._IMC_20 RUQ 985

Notes: Reading_Collection
 Mars, 2018

3._IMC_20 RUQ 985

 Dapeng Zhang, 2014

USDA-SHRS United States of America

4._IMC_20 MITC-000417

 Mars, 2018

  Key to SNP Markers

1TcSNP13 2TcSNP25 3TcSNP28 4TcSNP32 5TcSNP33
6TcSNP42 7TcSNP49 8TcSNP52 9TcSNP60 10TcSNP75
11TcSNP90 12TcSNP122 13TcSNP131 14TcSNP143 15TcSNP144
16TcSNP150 17TcSNP151 18TcSNP154 19TcSNP174 20TcSNP176
21TcSNP189 22TcSNP193 23TcSNP194 24TcSNP226 25TcSNP230
26TcSNP240 27TcSNP242 28TcSNP290 29TcSNP305 30TcSNP316
31TcSNP329 32TcSNP363 33TcSNP364 34TcSNP372 35TcSNP413
36TcSNP418 37TcSNP421 38TcSNP429 39TcSNP430 40TcSNP448
41TcSNP469 42TcSNP497 43TcSNP519 44TcSNP521 45TcSNP522
46TcSNP529 47TcSNP534 48TcSNP546 49TcSNP547 50TcSNP560
51TcSNP561 52TcSNP577 53TcSNP589 54TcSNP591 55TcSNP602
56TcSNP619 57TcSNP640 58TcSNP642 59TcSNP644 60TcSNP645
61TcSNP653 62TcSNP660 63TcSNP689 64TcSNP702 65TcSNP723
66TcSNP731 67TcSNP739 68TcSNP751 69TcSNP776 70TcSNP799
71TcSNP800 72TcSNP823 73TcSNP835 74TcSNP836 75TcSNP860
76TcSNP872 77TcSNP878 78TcSNP891 79TcSNP894 80TcSNP899
81TcSNP917 82TcSNP929 83TcSNP944 84TcSNP945 85TcSNP953
86TcSNP994 87TcSNP998 88TcSNP999 89TcSNP1010 90TcSNP1019
91TcSNP1034 92TcSNP1053 93TcSNP1060 94TcSNP1062 95TcSNP1063
96TcSNP1075 97TcSNP1096 98TcSNP1111 99TcSNP1112 100TcSNP1126
101TcSNP1144 102TcSNP1149 103TcSNP1156 104TcSNP1175 105TcSNP1205
106TcSNP1230 107TcSNP1253 108TcSNP1270 109TcSNP1275 110TcSNP1293
111TcSNP1309 112TcSNP1350 113TcSNP1383 114TcSNP1401 115TcSNP1404
116TcSNP1414 117TcSNP1439 118TcSNP1442 119TcSNP1458 120TcSNP1484
121TcSNP1520 122TcSNP1524 123TcSNP1527 124Tcm001s00947643 125Tcm003s01336581
126Tcm003s07402719 127Tcm006s26664133