SNP Profiles of IMC 54 View Data

Key

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
1._IMC 54___	___	___	GG	GG	TT	___	GG	___	___	CC	TT	CC	TT	___
2._IMC 54___	___	___	GG	GG	TT	___	GG	___	___	CC	TT	CC	TT	___
3._IMC 54___	___	___	GG	GG	TT	___	GG	___	___	CC	TT	CC	TT	___
4._IMC 54___	___	___	GG	GG	TT	___	GG	___	___	CC	TT	CC	TT	___
5._IMC 54___	___	___	GG	GG	TT	___	GG	___	___	CC	TT	CC	TT	___
6._IMC 54___	___	___	GG	CC	TT	___	GG	___	___	GG	AA	CC	AA	___
7._IMC 54___	___	___	GG	___	TT	___	___	___	___	___	___	___	___	___
8._IMC 54___	___	___	GG	___	TT	___	___	___	___	___	___	___	___	___
9._IMC 54___	___	___	GG	___	TT	___	___	___	___	___	___	___	___	___
10._IMC 54___	___	___	GG	___	TT	___	___	___	___	___	___	___	___	___
11._IMC 54___	___	___	GG	___	TT	___	___	___	___	___	___	___	___	___
12._IMC 54___	TT	CC	___	___	___	TT	___	CC	GG	___	___	___	___	TT
13._IMC 54___	___	___	___	___	___	___	___	___	___	___	TT	CC	___	___
14._IMC 54___	___	___	GG	___	TT	___	___	___	___	___	___	___	___	___
15._IMC 54___	___	___	CG	___	AT	___	___	___	___	___	___	___	___	___

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
1._IMC 54___	___	CC	GT	CT	TT	GG	___	___	AA	___	CC	AG	GG	TT
2._IMC 54___	___	CC	GT	CT	TT	GG	___	___	AA	___	CC	AG	GG	TT
3._IMC 54___	___	CC	GT	CT	TT	GG	___	___	AA	___	CC	AG	GG	TT
4._IMC 54___	___	CC	GT	CT	TT	GG	___	___	AA	___	CC	AG	GG	TT
5._IMC 54___	___	CC	GT	CT	TT	GG	___	___	AA	___	CC	AG	GG	TT
6._IMC 54___	___	CC	AC	AG	AA	GG	___	___	AC	___	GG	AG	GG	AA
7._IMC 54___	___	CC	GT	CT	___	___	___	___	AA	___	CC	AG	___	TT
8._IMC 54___	___	CC	GT	CT	___	___	___	___	AA	___	CC	AG	___	TT
9._IMC 54___	___	CC	GT	CT	___	___	___	___	AA	___	CC	AG	___	TT
10._IMC 54___	___	CC	GT	CT	___	___	___	___	AA	___	CC	AG	___	TT
11._IMC 54___	___	CC	GT	CT	___	___	___	___	AA	___	CC	AG	___	TT
12._IMC 54___	AT	CC	___	___	___	___	CT	AG	___	GT	___	AG	___	___
13._IMC 54___	___	CC	GT	CT	___	GG	___	___	AC	___	CC	AG	___	TT
14._IMC 54___	___	___	GT	CT	___	___	___	___	AC	___	CC	AG	___	CT
15._IMC 54___	___	CC	GT	___	___	___	___	___	AC	___	___	GG	___	CT

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
1._IMC 54___	___	___	AA	AG	___	GG	AA	CC	GG	___	GG	AT	___	AA
2._IMC 54___	___	___	AA	AG	___	GG	AA	CC	GG	___	GG	AT	CC	AA
3._IMC 54___	___	___	AA	AG	___	GG	AA	CC	GG	___	GG	AT	CC	AA
4._IMC 54___	___	___	AA	AG	___	GG	AA	CC	GG	___	GG	AT	CC	AA
5._IMC 54___	___	___	AA	AG	___	GG	AA	CC	GG	___	GG	AT	CC	AA
6._IMC 54___	___	___	TT	AG	___	GG	AA	GG	GG	___	GG	AT	GG	___
7._IMC 54___	___	___	___	___	___	___	AA	___	___	___	GG	___	___	AA
8._IMC 54___	___	___	___	___	___	___	AA	___	___	___	GG	___	___	AA
9._IMC 54___	___	___	___	___	___	___	AA	___	___	___	GG	___	___	AA
10._IMC 54___	___	___	___	___	___	___	AA	___	___	___	GG	___	___	AA
11._IMC 54___	___	___	___	___	___	___	AA	___	___	___	GG	___	___	AA
12._IMC 54___	TT	AC	___	AG	AC	___	___	___	___	CC	___	___	___	___
13._IMC 54___	___	___	___	AG	___	GG	AA	___	___	___	___	___	CC	AA
14._IMC 54___	___	___	___	___	___	___	AA	___	___	___	AG	___	___	AA
15._IMC 54___	___	___	___	___	___	___	AT	___	___	___	AG	___	___	AA

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
1._IMC 54___	___	___	AA	___	CC	CT	___	AG	GT	GG	GG	___	AA	CC
2._IMC 54___	___	___	AA	___	CC	CT	___	AG	GT	GG	GG	___	AA	CC
3._IMC 54___	___	___	AA	___	CC	CT	___	AG	GT	GG	GG	___	AA	CC
4._IMC 54___	___	___	AA	___	CC	CT	___	AG	GT	GG	GG	___	AA	CC
5._IMC 54___	___	___	AA	___	CC	CT	___	AG	GT	GG	GG	___	AA	CC
6._IMC 54___	AG	___	AA	___	CC	___	___	AG	AC	GG	GG	___	AA	GG
7._IMC 54___	___	___	___	___	CC	CT	___	___	GT	___	GG	___	AA	___
8._IMC 54___	___	___	___	___	CC	CT	___	___	GT	___	GG	___	AA	___
9._IMC 54___	___	___	___	___	CC	CT	___	___	GT	___	GG	___	AA	___
10._IMC 54___	___	___	___	___	CC	CT	___	___	GT	___	GG	___	AA	___
11._IMC 54___	___	___	___	___	CC	CT	___	___	GT	___	GG	___	AA	___
12._IMC 54___	___	AA	___	CC	CC	___	AG	___	___	___	GG	AT	AA	CC
13._IMC 54___	___	___	___	___	CC	CT	___	___	GT	___	GG	___	AA	CC
14._IMC 54___	___	___	___	___	CC	CT	___	___	GT	___	GG	___	AA	___
15._IMC 54___	___	___	___	___	CC	CC	___	___	GG	___	GG	___	AC	___

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
1._IMC 54___	AG	CC	___	___	___	AA	AA	___	AA	TT	CC	GG	GG	___
2._IMC 54___	AG	CC	___	___	___	AA	AA	___	AA	TT	CC	GG	GG	___
3._IMC 54___	AG	CC	___	___	___	AA	AA	___	AA	TT	CC	GG	GG	___
4._IMC 54___	AG	CC	___	___	___	AA	AA	___	AA	TT	CC	GG	GG	___
5._IMC 54___	AG	CC	___	___	___	AA	AA	___	AA	TT	CC	GG	GG	___
6._IMC 54___	___	GG	___	___	___	___	AA	___	AA	___	___	CC	GG	___
7._IMC 54___	___	CC	___	___	___	AA	___	___	___	___	___	GG	___	___
8._IMC 54___	___	CC	___	___	___	AA	___	___	___	___	___	GG	___	___
9._IMC 54___	___	CC	___	___	___	AA	___	___	___	___	___	GG	___	___
10._IMC 54___	___	CC	___	___	___	AA	___	___	___	___	___	GG	___	___
11._IMC 54___	___	CC	___	___	___	AA	___	___	___	___	___	GG	___	___
12._IMC 54___	___	___	CT	AG	CC	AA	___	CG	___	___	TT	GG	GG	CT
13._IMC 54___	___	CC	___	___	___	___	___	___	___	___	TT	GG	GG	___
14._IMC 54___	___	CC	___	___	___	AA	___	___	___	___	___	GG	___	___
15._IMC 54___	___	CC	___	___	___	AA	___	___	___	___	___	GT	___	___

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
1._IMC 54___	TT	TT	TT	___	AC	___	GG	___	CC	CC	CT	CC	GG	CC
2._IMC 54___	TT	TT	TT	___	AC	___	GG	___	CC	CC	CT	CC	GG	CC
3._IMC 54___	TT	TT	TT	___	AC	___	GG	___	CC	CC	CT	CC	GG	CC
4._IMC 54___	TT	TT	TT	___	AC	___	GG	___	CC	CC	CT	CC	GG	CC
5._IMC 54___	TT	TT	TT	___	AC	___	GG	___	CC	CC	CT	CC	GG	CC
6._IMC 54___	AA	AA	AA	___	AC	___	CC	GG	GG	___	AG	GG	GG	GG
7._IMC 54___	___	___	___	___	___	___	___	___	CC	___	CT	___	___	CC
8._IMC 54___	___	___	___	___	___	___	___	___	CC	___	CT	___	___	CC
9._IMC 54___	___	___	___	___	___	___	___	___	CC	___	CT	___	___	CC
10._IMC 54___	___	___	___	___	___	___	___	___	CC	___	CT	___	___	CC
11._IMC 54___	___	___	___	___	___	___	___	___	CC	___	CT	___	___	CC
12._IMC 54___	___	___	___	TT	AC	AA	TT	___	CC	___	___	___	GG	___
13._IMC 54___	___	___	TT	___	AC	___	___	___	CC	CC	TT	___	___	___
14._IMC 54___	___	___	___	___	___	___	___	___	CC	___	CT	___	___	CC
15._IMC 54___	___	___	___	___	___	___	___	___	CC	___	CT	___	___	CT

	85	86	87	88	89	90	91	92	93	94	95	96	97	98
1._IMC 54___	GG	CC	___	AT	TT	AA	CC	___	___	TT	CG	___	CT	GG
2._IMC 54___	GG	CC	___	AT	TT	AA	CC	___	___	TT	CG	___	CT	GG
3._IMC 54___	GG	CC	___	AT	TT	AA	CC	___	___	TT	CG	___	CT	GG
4._IMC 54___	GG	CC	___	AT	TT	AA	CC	___	___	TT	CG	___	CT	GG
5._IMC 54___	GG	CC	___	AT	TT	AA	CC	___	___	TT	CG	___	CT	GG
6._IMC 54___	GG	GG	___	AT	AA	AA	___	___	___	AA	___	___	AG	GG
7._IMC 54___	GG	___	___	AT	TT	AA	___	___	___	___	___	___	CT	GG
8._IMC 54___	GG	___	___	AT	TT	AA	___	___	___	___	___	___	CT	GG
9._IMC 54___	GG	___	___	AT	TT	AA	___	___	___	___	___	___	CT	GG
10._IMC 54___	GG	___	___	AT	TT	AA	___	___	___	___	___	___	CT	GG
11._IMC 54___	GG	___	___	AT	TT	AA	___	___	___	___	___	___	CT	GG
12._IMC 54___	___	___	CG	___	___	AA	CC	CC	AA	___	___	CC	___	GG
13._IMC 54___	___	___	___	___	___	AA	CC	___	___	___	___	___	CT	___
14._IMC 54___	GG	___	___	AT	TT	AA	___	___	___	___	___	___	CT	GG
15._IMC 54___	GG	___	___	TT	TT	AA	___	___	___	___	___	___	CT	GG

	99	100	101	102	103	104	105	106	107	108	109	110	111	112
1._IMC 54___	GG	AA	CC	GG	___	TT	CC	TT	CT	CC	GG	___	___	CC
2._IMC 54___	GG	AA	CC	GG	___	TT	CC	TT	CT	CC	GG	___	___	CC
3._IMC 54___	GG	AA	CC	GG	___	TT	CC	TT	CT	CC	GG	___	___	CC
4._IMC 54___	GG	AA	CC	GG	___	TT	CC	TT	CT	CC	GG	___	___	CC
5._IMC 54___	GG	AA	CC	GG	___	TT	CC	TT	CT	CC	GG	___	___	CC
6._IMC 54___	CC	AA	GG	GG	___	___	___	AA	AG	___	CC	___	___	___
7._IMC 54___	___	AA	___	___	___	___	CC	___	___	CC	___	___	___	___
8._IMC 54___	___	AA	___	___	___	___	CC	___	___	CC	___	___	___	___
9._IMC 54___	___	AA	___	___	___	___	CC	___	___	CC	___	___	___	___
10._IMC 54___	___	AA	___	___	___	___	CC	___	___	CC	___	___	___	___
11._IMC 54___	___	AA	___	___	___	___	CC	___	___	CC	___	___	___	___
12._IMC 54___	___	___	___	___	CT	___	CC	___	___	___	___	GG	AA	___
13._IMC 54___	GG	___	___	GG	___	TT	___	___	___	___	___	___	___	___
14._IMC 54___	___	AA	___	___	___	___	CC	___	___	CC	___	___	___	___
15._IMC 54___	___	AT	___	___	___	___	___	___	___	CT	___	___	___	___

	113	114	115	116	117	118	119	120	121	122	123	124	125	126
1._IMC 54___	TT	TT	___	___	TT	CC	GG	___	___	TT	CC	TT	CG	AG
2._IMC 54___	TT	TT	___	___	TT	CC	GG	___	___	TT	CC	TT	CG	AG
3._IMC 54___	TT	TT	___	___	TT	CC	GG	___	___	TT	CC	TT	CG	AG
4._IMC 54___	TT	TT	___	___	TT	CC	GG	___	___	TT	CC	TT	CG	AG
5._IMC 54___	TT	TT	___	___	TT	CC	GG	___	___	TT	CC	TT	CG	AG
6._IMC 54___	AA	AA	___	___	AG	CC	GG	___	___	AA	GG	AA	CG	AG
7._IMC 54___	TT	TT	___	___	___	CC	___	___	___	TT	___	TT	CG	AG
8._IMC 54___	TT	TT	___	___	___	CC	___	___	___	TT	___	TT	CG	AG
9._IMC 54___	TT	TT	___	___	___	CC	___	___	___	TT	___	TT	CG	AG
10._IMC 54___	TT	TT	___	___	___	CC	___	___	___	TT	___	TT	CG	AG
11._IMC 54___	TT	TT	___	___	___	CC	___	___	___	TT	___	TT	CG	AG
12._IMC 54___	TT	___	GG	AT	___	___	___	AA	AG	___	___	___	CG	___
13._IMC 54___	TT	___	___	___	CT	___	___	___	___	___	CC	TT	CG	AG
14._IMC 54___	TT	TT	___	___	___	CC	___	___	___	TT	___	___	CG	AG
15._IMC 54___	GT	TT	___	___	___	CC	___	___	___	___	___	TT	CG	GG

	127	128	129	130	131	132	133	134
1._IMC 54___	CC	___	___	AC	AA	AA	AA	AC	X_X	X_X	X_X	X_X	X_X	X_X
2._IMC 54___	CC	___	___	AC	AA	AA	AA	AC	X_X	X_X	X_X	X_X	X_X	X_X
3._IMC 54___	CC	___	___	AC	AA	AA	AA	AC	X_X	X_X	X_X	X_X	X_X	X_X
4._IMC 54___	CC	___	___	AC	AA	AA	AA	AC	X_X	X_X	X_X	X_X	X_X	X_X
5._IMC 54___	CC	___	___	AC	AA	AA	AA	AC	X_X	X_X	X_X	X_X	X_X	X_X
6._IMC 54___	GG	___	___	AC	___	AA	AA	AC	X_X	X_X	X_X	X_X	X_X	X_X
7._IMC 54___	CC	___	___	___	___	___	___	___	X_X	X_X	X_X	X_X	X_X	X_X
8._IMC 54___	CC	___	___	___	___	___	___	___	X_X	X_X	X_X	X_X	X_X	X_X
9._IMC 54___	CC	___	___	___	___	___	___	___	X_X	X_X	X_X	X_X	X_X	X_X
10._IMC 54___	CC	___	___	___	___	___	___	___	X_X	X_X	X_X	X_X	X_X	X_X
11._IMC 54___	CC	___	___	___	___	___	___	___	X_X	X_X	X_X	X_X	X_X	X_X
12._IMC 54___	___	TT	AT	___	___	___	___	___	X_X	X_X	X_X	X_X	X_X	X_X
13._IMC 54___	___	___	___	___	___	___	___	___	X_X	X_X	X_X	X_X	X_X	X_X
14._IMC 54___	CC	___	___	___	___	___	___	___	X_X	X_X	X_X	X_X	X_X	X_X
15._IMC 54___	___	___	___	___	___	___	___	___	X_X	X_X	X_X	X_X	X_X	X_X

Key

Mars Center for Cocoa Science Brazil

1._IMC_54 GC-04-018-1-18

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Location: Tree: 3

Notes: 3 > FP4

Mars, 2018

2._IMC_54 GC-04-018-1-18

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Location: Tree: 4

Notes: 4 > FP3

Mars, 2018

3._IMC_54 GC-04-018-1-18

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Location: Tree: 5

Notes: 5 > FP2

Mars, 2018

4._IMC_54 GC-04-018-1-18

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Location: Tree: 6

Notes: 6 > FP1

Mars, 2018

5._IMC_54 GC-04-018-1-18

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Location: Tree: 7

Notes: 7

Mars, 2018

6._IMC_54 GC-04-18-1-18

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Location: Field: 4, Block: 1, Rep: 18, Tree: 7

Notes: MCCS_Structure_refs_above_0.9membership

Mars, 2018

7._IMC_54

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Location: 4118 7

Dapeng Zhang, 2016

8._IMC_54

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Location: 4118 3 > FP

Dapeng Zhang, 2016

9._IMC_54

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Location: 4118 4 > FP

Dapeng Zhang, 2016

10._IMC_54

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Location: 4118 5 > FP

Dapeng Zhang, 2016

11._IMC_54

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Location: 4118 6 > FP

Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

12._IMC_54 RUQ 11

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Lambert Motilal, 2023

Population Assignment:

View Data

IMC
0.995

13._IMC_54 RUQ 11

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Dapeng Zhang, 2014

14._IMC_54 RUQ 11

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Dapeng Zhang, 2016

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

15._IMC_54

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Location: Marper D311

Dapeng Zhang, 2016

Key to SNP Markers

1	TcSNP13	2	TcSNP19	3	TcSNP25	4	TcSNP28	5	TcSNP32
6	TcSNP33	7	TcSNP42	8	TcSNP49	9	TcSNP52	10	TcSNP60
11	TcSNP75	12	TcSNP90	13	TcSNP122	14	TcSNP131	15	TcSNP143
16	TcSNP144	17	TcSNP150	18	TcSNP151	19	TcSNP154	20	TcSNP174
21	TcSNP176	22	TcSNP189	23	TcSNP193	24	TcSNP194	25	TcSNP226
26	TcSNP230	27	TcSNP240	28	TcSNP242	29	TcSNP290	30	TcSNP305
31	TcSNP316	32	TcSNP329	33	TcSNP363	34	TcSNP364	35	TcSNP372
36	TcSNP413	37	TcSNP418	38	TcSNP421	39	TcSNP429	40	TcSNP430
41	TcSNP448	42	TcSNP469	43	TcSNP497	44	TcSNP519	45	TcSNP521
46	TcSNP522	47	TcSNP529	48	TcSNP534	49	TcSNP546	50	TcSNP547
51	TcSNP560	52	TcSNP561	53	TcSNP577	54	TcSNP589	55	TcSNP591
56	TcSNP602	57	TcSNP606	58	TcSNP619	59	TcSNP640	60	TcSNP642
61	TcSNP644	62	TcSNP645	63	TcSNP653	64	TcSNP660	65	TcSNP689
66	TcSNP701	67	TcSNP702	68	TcSNP723	69	TcSNP731	70	TcSNP739
71	TcSNP751	72	TcSNP776	73	TcSNP799	74	TcSNP800	75	TcSNP823
76	TcSNP835	77	TcSNP836	78	TcSNP860	79	TcSNP872	80	TcSNP878
81	TcSNP891	82	TcSNP894	83	TcSNP899	84	TcSNP917	85	TcSNP929
86	TcSNP944	87	TcSNP945	88	TcSNP953	89	TcSNP994	90	TcSNP998
91	TcSNP999	92	TcSNP1010	93	TcSNP1019	94	TcSNP1034	95	TcSNP1041
96	TcSNP1053	97	TcSNP1060	98	TcSNP1062	99	TcSNP1063	100	TcSNP1075
101	TcSNP1096	102	TcSNP1111	103	TcSNP1112	104	TcSNP1126	105	TcSNP1144
106	TcSNP1149	107	TcSNP1156	108	TcSNP1165	109	TcSNP1175	110	TcSNP1205
111	TcSNP1230	112	TcSNP1242	113	TcSNP1253	114	TcSNP1270	115	TcSNP1275
116	TcSNP1293	117	TcSNP1309	118	TcSNP1350	119	TcSNP1383	120	TcSNP1401
121	TcSNP1404	122	TcSNP1414	123	TcSNP1439	124	TcSNP1442	125	TcSNP1458
126	TcSNP1484	127	TcSNP1520	128	TcSNP1524	129	TcSNP1527	130	Tcm001s00947643
131	Tcm002s20575712	132	Tcm003s01336581	133	Tcm003s07402719	134	Tcm006s26664133