SNP Profiles of AMAZ 5 /2 View Data

Key

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
1._AMAZ 5 /2___	___	___	GG	GG	AA	___	GG	___	___	CC	CT	CC	TT	___
2._AMAZ 5 /2___	___	___	GG	GG	AA	___	GG	___	___	CC	CT	CC	TT	___
3._AMAZ 5 /2___	___	___	GG	GG	AA	___	GG	___	___	CC	CT	CC	TT	___
4._AMAZ 5 /2___	___	___	GG	GG	AA	___	GG	___	___	CC	CT	CC	TT	___
5._AMAZ 5 /2___	___	___	GG	___	AA	___	___	___	___	___	___	___	___	___
6._AMAZ 5 /2___	___	___	GG	___	AA	___	___	___	___	___	___	___	___	___
7._AMAZ 5 /2___	___	___	GG	___	AA	___	___	___	___	___	___	___	___	___
8._AMAZ 5 /2___	___	___	GG	___	AA	___	___	___	___	___	___	___	___	___
9._AMAZ 5 /2___	CT	AC	___	___	___	TT	___	CC	GG	___	___	___	___	TT
10._AMAZ 5 /2___	___	___	___	___	___	___	___	___	___	___	CT	CC	___	___
11._AMAZ 5 /2___	___	___	GG	___	AA	___	___	___	___	___	___	___	___	___
12._AMAZ 5 /2___	___	___	GG	___	TT	___	___	___	___	___	___	___	___	___

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
1._AMAZ 5 /2___	___	AA	TT	TT	TT	GG	___	___	AA	___	GG	AA	GG	TT
2._AMAZ 5 /2___	___	AA	TT	TT	TT	GG	___	___	AA	___	GG	AA	GG	TT
3._AMAZ 5 /2___	___	AA	TT	TT	TT	GG	___	___	AA	___	GG	AA	GG	TT
4._AMAZ 5 /2___	___	AA	TT	TT	TT	GG	___	___	AA	___	GG	AA	GG	TT
5._AMAZ 5 /2___	___	AA	TT	TT	___	___	___	___	AA	___	GG	AA	___	TT
6._AMAZ 5 /2___	___	AA	TT	TT	___	___	___	___	AA	___	GG	AA	___	TT
7._AMAZ 5 /2___	___	AA	TT	TT	___	___	___	___	AA	___	GG	AA	___	TT
8._AMAZ 5 /2___	___	AA	TT	TT	___	___	___	___	AA	___	GG	AA	___	TT
9._AMAZ 5 /2___	AA	AA	___	___	___	___	TT	GG	___	GT	___	AA	___	___
10._AMAZ 5 /2___	___	AA	TT	TT	___	GG	___	___	AA	___	GG	AA	___	TT
11._AMAZ 5 /2___	___	AA	TT	TT	___	___	___	___	AA	___	GG	AA	___	TT
12._AMAZ 5 /2___	___	CC	TT	CC	___	___	___	___	AA	___	CC	AA	___	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
1._AMAZ 5 /2___	___	___	AT	GG	___	GG	AA	CC	AA	___	GG	AT	GG	AA
2._AMAZ 5 /2___	___	___	AT	GG	___	GG	AA	CC	AA	___	GG	AT	GG	AA
3._AMAZ 5 /2___	___	___	AT	GG	___	GG	AA	CC	AA	___	GG	AT	GG	AA
4._AMAZ 5 /2___	___	___	AT	GG	___	GG	AA	CC	AA	___	GG	AT	GG	AA
5._AMAZ 5 /2___	___	___	___	___	___	___	AA	___	___	___	GG	___	___	AA
6._AMAZ 5 /2___	___	___	___	___	___	___	AA	___	___	___	GG	___	___	AA
7._AMAZ 5 /2___	___	___	___	___	___	___	AA	___	___	___	GG	___	___	AA
8._AMAZ 5 /2___	___	___	___	___	___	___	AA	___	___	___	GG	___	___	AA
9._AMAZ 5 /2___	TT	AA	___	GG	AC	___	___	___	___	CC	___	___	___	___
10._AMAZ 5 /2___	___	___	___	GG	___	GG	AA	___	___	___	___	___	GG	AA
11._AMAZ 5 /2___	___	___	___	___	___	___	AA	___	___	___	GG	___	___	AA
12._AMAZ 5 /2___	___	___	___	___	___	___	AA	___	___	___	GG	___	___	AA

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
1._AMAZ 5 /2___	___	AC	___	CC	CC	___	AA	GG	GG	GG	___	AA	CT	AA
2._AMAZ 5 /2___	___	AC	___	CC	CC	___	AA	GG	GG	GG	___	AA	CT	AA
3._AMAZ 5 /2___	___	AC	___	CC	CC	___	AA	GG	GG	GG	___	AA	CT	AA
4._AMAZ 5 /2___	___	AC	___	CC	CC	___	AA	GG	GG	GG	___	AA	CT	AA
5._AMAZ 5 /2___	___	___	___	CC	CC	___	___	GG	___	GG	___	AA	___	___
6._AMAZ 5 /2___	___	___	___	CC	CC	___	___	GG	___	GG	___	AA	___	___
7._AMAZ 5 /2___	___	___	___	CC	CC	___	___	GG	___	GG	___	AA	___	___
8._AMAZ 5 /2___	___	___	___	CC	CC	___	___	GG	___	GG	___	AA	___	___
9._AMAZ 5 /2___	AA	___	CC	CC	___	AA	___	___	___	GG	TT	AA	CT	___
10._AMAZ 5 /2___	___	___	___	CC	CC	___	___	GG	___	GG	___	AA	CT	___
11._AMAZ 5 /2___	___	___	___	CC	CC	___	___	GG	___	GG	___	AA	___	___
12._AMAZ 5 /2___	___	___	___	CC	TT	___	___	TT	___	CC	___	AA	___	___

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
1._AMAZ 5 /2___	CT	___	___	___	AA	AA	___	AA	TT	TT	GG	AA	___	TT
2._AMAZ 5 /2___	CT	___	___	___	AA	AA	___	AA	TT	TT	GG	AA	___	TT
3._AMAZ 5 /2___	CT	___	___	___	AA	AA	___	AA	TT	TT	GG	AA	___	TT
4._AMAZ 5 /2___	CT	___	___	___	AA	AA	___	AA	TT	TT	GG	AA	___	TT
5._AMAZ 5 /2___	CT	___	___	___	AA	___	___	___	___	___	GG	___	___	___
6._AMAZ 5 /2___	CT	___	___	___	AA	___	___	___	___	___	GG	___	___	___
7._AMAZ 5 /2___	CT	___	___	___	AA	___	___	___	___	___	GG	___	___	___
8._AMAZ 5 /2___	CT	___	___	___	AA	___	___	___	___	___	GG	___	___	___
9._AMAZ 5 /2___	___	TT	GG	CC	AA	___	CG	___	___	TT	GG	AA	CC	___
10._AMAZ 5 /2___	CT	___	___	___	___	___	___	___	___	TT	GG	AA	___	___
11._AMAZ 5 /2___	CT	___	___	___	AA	___	___	___	___	___	GG	___	___	___
12._AMAZ 5 /2___	TT	___	___	___	AA	___	___	___	___	___	GG	___	___	___

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
1._AMAZ 5 /2___	TT	TT	___	CC	___	CC	AA	CC	CC	CT	CC	GG	CC	GG
2._AMAZ 5 /2___	TT	TT	___	CC	___	CC	AA	CC	CC	CT	CC	GG	CC	GG
3._AMAZ 5 /2___	TT	TT	___	CC	___	CC	AA	CC	CC	CT	CC	GG	CC	GG
4._AMAZ 5 /2___	TT	TT	___	CC	___	CC	AA	CC	CC	CT	CC	GG	CC	GG
5._AMAZ 5 /2___	___	___	___	___	___	___	___	CC	___	CT	___	___	CC	GG
6._AMAZ 5 /2___	___	___	___	___	___	___	___	CC	___	CT	___	___	CC	GG
7._AMAZ 5 /2___	___	___	___	___	___	___	___	CC	___	CT	___	___	CC	GG
8._AMAZ 5 /2___	___	___	___	___	___	___	___	CC	___	CT	___	___	CC	GG
9._AMAZ 5 /2___	___	___	TT	CC	AA	TT	___	CC	___	___	___	GG	___	___
10._AMAZ 5 /2___	___	TT	___	CC	___	___	___	CC	CC	TT	___	GG	___	___
11._AMAZ 5 /2___	___	___	___	___	___	___	___	CC	___	CT	___	___	CC	GG
12._AMAZ 5 /2___	___	___	___	___	___	___	___	GG	___	CC	___	___	TT	GG

	85	86	87	88	89	90	91	92	93	94	95	96	97	98
1._AMAZ 5 /2___	CC	___	AA	CC	AA	CC	___	___	TT	GG	___	CT	AG	GG
2._AMAZ 5 /2___	CC	___	AA	CC	AA	CC	___	___	TT	GG	___	CT	AG	GG
3._AMAZ 5 /2___	CC	___	AA	CC	AA	CC	___	___	TT	GG	___	CT	AG	GG
4._AMAZ 5 /2___	CC	___	AA	CC	AA	CC	___	___	TT	GG	___	CT	AG	GG
5._AMAZ 5 /2___	___	___	AA	CC	AA	___	___	___	___	___	___	CT	AG	___
6._AMAZ 5 /2___	___	___	AA	CC	AA	___	___	___	___	___	___	CT	AG	___
7._AMAZ 5 /2___	___	___	AA	CC	AA	___	___	___	___	___	___	CT	AG	___
8._AMAZ 5 /2___	___	___	AA	CC	AA	___	___	___	___	___	___	CT	AG	___
9._AMAZ 5 /2___	___	CG	___	___	AA	CC	CC	AA	___	___	CC	___	AG	___
10._AMAZ 5 /2___	___	___	___	___	AA	CC	___	___	___	___	___	CT	___	GG
11._AMAZ 5 /2___	___	___	AA	CC	AA	___	___	___	___	___	___	TT	AG	___
12._AMAZ 5 /2___	___	___	AA	TT	GG	___	___	___	___	___	___	CC	AA	___

	99	100	101	102	103	104	105	106	107	108	109	110	111	112
1._AMAZ 5 /2___	AA	CC	GG	___	TT	CC	TT	CT	CC	GG	___	___	AC	TT
2._AMAZ 5 /2___	AA	CC	GG	___	TT	CC	TT	CT	CC	GG	___	___	AC	TT
3._AMAZ 5 /2___	AA	CC	GG	___	TT	CC	TT	CT	CC	GG	___	___	AC	TT
4._AMAZ 5 /2___	AA	CC	GG	___	TT	CC	TT	CT	CC	GG	___	___	AC	TT
5._AMAZ 5 /2___	AA	___	___	___	___	CC	___	___	CC	___	___	___	___	TT
6._AMAZ 5 /2___	AA	___	___	___	___	CC	___	___	CC	___	___	___	___	TT
7._AMAZ 5 /2___	AA	___	___	___	___	CC	___	___	CC	___	___	___	___	TT
8._AMAZ 5 /2___	AA	___	___	___	___	CC	___	___	CC	___	___	___	___	TT
9._AMAZ 5 /2___	___	___	___	CT	___	CC	___	___	___	___	GG	AA	___	TT
10._AMAZ 5 /2___	___	___	GG	___	TT	___	___	___	___	___	___	___	___	TT
11._AMAZ 5 /2___	AA	___	___	___	___	CC	___	___	CC	___	___	___	___	TT
12._AMAZ 5 /2___	AA	___	___	___	___	TT	___	___	CC	___	___	___	___	TT

	113	114	115	116	117	118	119	120	121	122	123	124	125	126
1._AMAZ 5 /2___	TT	___	___	TT	AA	GG	___	___	TT	CC	TT	CC	GG	CC
2._AMAZ 5 /2___	TT	___	___	TT	AA	GG	___	___	TT	CC	TT	CC	GG	CC
3._AMAZ 5 /2___	TT	___	___	TT	AA	GG	___	___	TT	CC	TT	CC	GG	CC
4._AMAZ 5 /2___	TT	___	___	TT	AA	GG	___	___	TT	CC	TT	CC	GG	CC
5._AMAZ 5 /2___	TT	___	___	___	AA	___	___	___	TT	___	TT	CC	GG	CC
6._AMAZ 5 /2___	TT	___	___	___	AA	___	___	___	TT	___	TT	CC	GG	CC
7._AMAZ 5 /2___	TT	___	___	___	AA	___	___	___	TT	___	TT	CC	GG	CC
8._AMAZ 5 /2___	TT	___	___	___	AA	___	___	___	TT	___	TT	CC	GG	CC
9._AMAZ 5 /2___	___	GG	AT	___	___	___	GG	GG	___	___	___	CC	___	___
10._AMAZ 5 /2___	___	___	___	TT	___	___	___	___	___	CC	TT	CC	GG	___
11._AMAZ 5 /2___	TT	___	___	___	AA	___	___	___	TT	___	TT	CC	GG	CC
12._AMAZ 5 /2___	CC	___	___	___	AA	___	___	___	TT	___	CC	GG	AA	TT

	127	128	129	130	131	132	133
1._AMAZ 5 /2___	___	___	AC	AG	AC	AG	CC	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._AMAZ 5 /2___	___	___	AC	AG	AC	AG	CC	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._AMAZ 5 /2___	___	___	AC	AG	AC	AG	CC	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._AMAZ 5 /2___	___	___	AC	AG	AC	AG	CC	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._AMAZ 5 /2___	___	___	___	___	___	___	___	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._AMAZ 5 /2___	___	___	___	___	___	___	___	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._AMAZ 5 /2___	___	___	___	___	___	___	___	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._AMAZ 5 /2___	___	___	___	___	___	___	___	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._AMAZ 5 /2___	TT	AA	___	___	___	___	___	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._AMAZ 5 /2___	___	___	___	___	___	___	___	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._AMAZ 5 /2___	___	___	___	___	___	___	___	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._AMAZ 5 /2___	___	___	___	___	___	___	___	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Key

Mars Center for Cocoa Science Brazil

1._AMAZ_5_/2 GC-03-008-1-08

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Location: Tree: 2

Notes: 2

Mars, 2018

2._AMAZ_5_/2 GC-03-008-1-08

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Location: Tree: 5

Notes: 5

Mars, 2018

3._AMAZ_5_/2 GC-03-008-1-08

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Location: Tree: 8

Notes: 8 > FP3

Mars, 2018

4._AMAZ_5_/2 GC-03-008-1-08

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Location: Tree: 9

Notes: 9 > FP1

Mars, 2018

5._AMAZ_5_/2

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Location: 3108 2

Dapeng Zhang, 2016

6._AMAZ_5_/2

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Location: 3108 5

Dapeng Zhang, 2016

7._AMAZ_5_/2

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Location: 3108 8 > FP

Dapeng Zhang, 2016

8._AMAZ_5_/2

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Location: 3108 9 > FP

Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

9._AMAZ_5_/2 RUQ 93

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Lambert Motilal, 2023

Population Assignment:

View Data

Cri
0.063 IMC
0.441 LCT
0.245 Nan
0.200

10._AMAZ_5_/2 RUQ 93

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Dapeng Zhang, 2014

11._AMAZ_5_/2 RUQ 93

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Dapeng Zhang, 2016

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

12._AMAZ_5_/2

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Location: 4A A20 T1

Dapeng Zhang, 2016

Key to SNP Markers

1	TcSNP13	2	TcSNP19	3	TcSNP25	4	TcSNP28	5	TcSNP32
6	TcSNP33	7	TcSNP42	8	TcSNP49	9	TcSNP52	10	TcSNP60
11	TcSNP75	12	TcSNP90	13	TcSNP122	14	TcSNP131	15	TcSNP143
16	TcSNP144	17	TcSNP150	18	TcSNP151	19	TcSNP154	20	TcSNP174
21	TcSNP176	22	TcSNP189	23	TcSNP193	24	TcSNP194	25	TcSNP226
26	TcSNP230	27	TcSNP240	28	TcSNP242	29	TcSNP290	30	TcSNP305
31	TcSNP316	32	TcSNP329	33	TcSNP363	34	TcSNP364	35	TcSNP372
36	TcSNP413	37	TcSNP418	38	TcSNP421	39	TcSNP429	40	TcSNP430
41	TcSNP448	42	TcSNP469	43	TcSNP519	44	TcSNP521	45	TcSNP522
46	TcSNP529	47	TcSNP534	48	TcSNP546	49	TcSNP547	50	TcSNP560
51	TcSNP561	52	TcSNP577	53	TcSNP589	54	TcSNP591	55	TcSNP602
56	TcSNP606	57	TcSNP619	58	TcSNP640	59	TcSNP642	60	TcSNP644
61	TcSNP645	62	TcSNP653	63	TcSNP660	64	TcSNP689	65	TcSNP701
66	TcSNP702	67	TcSNP723	68	TcSNP731	69	TcSNP739	70	TcSNP751
71	TcSNP776	72	TcSNP799	73	TcSNP800	74	TcSNP823	75	TcSNP835
76	TcSNP836	77	TcSNP860	78	TcSNP872	79	TcSNP878	80	TcSNP891
81	TcSNP894	82	TcSNP899	83	TcSNP917	84	TcSNP929	85	TcSNP944
86	TcSNP945	87	TcSNP953	88	TcSNP994	89	TcSNP998	90	TcSNP999
91	TcSNP1010	92	TcSNP1019	93	TcSNP1034	94	TcSNP1041	95	TcSNP1053
96	TcSNP1060	97	TcSNP1062	98	TcSNP1063	99	TcSNP1075	100	TcSNP1096
101	TcSNP1111	102	TcSNP1112	103	TcSNP1126	104	TcSNP1144	105	TcSNP1149
106	TcSNP1156	107	TcSNP1165	108	TcSNP1175	109	TcSNP1205	110	TcSNP1230
111	TcSNP1242	112	TcSNP1253	113	TcSNP1270	114	TcSNP1275	115	TcSNP1293
116	TcSNP1309	117	TcSNP1350	118	TcSNP1383	119	TcSNP1401	120	TcSNP1404
121	TcSNP1414	122	TcSNP1439	123	TcSNP1442	124	TcSNP1458	125	TcSNP1484
126	TcSNP1520	127	TcSNP1524	128	TcSNP1527	129	Tcm001s00947643	130	Tcm002s20575712
131	Tcm003s01336581	132	Tcm003s07402719	133	Tcm006s26664133