SNP Profiles of APA 4 View Data

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
1._APA 4___	___	___	___	___	___	___	___	___	___	___	___	___	___	___
2._APA 4___	TT	CC	___	___	___	CC	___	CC	GG	___	___	___	___	TT
3._APA 4___	___	___	GG	AA	TT	___	GG	___	___	GG	AA	CC	GG	___
4._APA 4___	___	___	___	___	___	___	___	___	___	___	TT	CC	___	___
5._APA 4___	___	___	GG	AA	TT	___	GG	___	___	GG	AA	CC	GG	___

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
1._APA 4___	___	CC	___	CC	___	GG	___	___	AA	___	GG	AA	___	___
2._APA 4___	TT	CC	___	___	___	___	CC	GG	___	TT	___	AA	___	___
3._APA 4___	___	CC	AA	GG	TT	GG	___	___	AA	___	GG	AA	GG	GG
4._APA 4___	___	CC	TT	CC	___	GG	___	___	AA	___	CC	AA	___	CC
5._APA 4___	___	CC	AA	GG	TT	GG	___	___	AA	___	GG	AA	GG	GG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
1._APA 4___	___	___	___	___	___	GG	AA	TT	___	___	___	___	CC	___
2._APA 4___	TT	AA	___	GG	AA	___	___	___	___	CC	___	___	___	___
3._APA 4___	___	___	TT	GG	___	GG	AA	AA	GG	___	GG	AA	GG	___
4._APA 4___	___	___	___	GG	___	GG	AA	___	___	___	___	___	CC	AA
5._APA 4___	___	___	TT	GG	___	GG	AA	AA	GG	___	GG	AA	GG	___

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
1._APA 4___	___	___	___	___	___	___	___	___	___	CC	___	AA	CC	AA
2._APA 4___	___	CC	___	TT	AC	GG	___	___	___	CC	TT	AA	CC	___
3._APA 4___	AA	___	CC	___	CC	___	GG	AA	AA	CC	___	AA	GG	___
4._APA 4___	___	___	___	___	CC	___	___	TT	___	CC	___	AA	CC	___
5._APA 4___	AA	___	CC	___	CC	___	GG	AA	AA	CC	___	AA	GG	___

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
1._APA 4___	___	___	___	___	___	___	___	___	___	___	___	___	TT	___
2._APA 4___	___	TT	AA	CC	AA	___	GG	___	TT	GG	GG	TT	___	___
3._APA 4___	GG	___	___	___	___	AA	___	AA	___	CC	GG	___	AA	CC
4._APA 4___	CC	___	___	___	___	___	___	___	TT	GG	GG	___	___	___
5._APA 4___	GG	___	___	___	___	AA	___	AA	___	CC	GG	___	AA	CC

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
1._APA 4___	___	___	___	___	___	GG	CC	GG	CC	___	___	___	___	___
2._APA 4___	___	TT	AA	TT	TT	___	GG	___	___	___	AA	___	___	___
3._APA 4___	AA	___	AA	___	CC	GG	CC	___	GG	GG	AA	GG	GG	GG
4._APA 4___	TT	___	AA	___	___	___	GG	CC	CC	___	___	___	___	___
5._APA 4___	AA	___	AA	___	CC	GG	CC	___	GG	GG	AA	GG	GG	GG

	85	86	87	88	89	90	91	92	93	94	95	96	97	98
1._APA 4___	___	___	CC	___	___	___	___	___	GG	___	CC	___	___	___
2._APA 4___	CC	___	___	GG	TT	CC	AA	___	___	CC	___	AA	___	___
3._APA 4___	___	AA	GG	GG	___	___	___	AA	___	___	GG	AA	CC	AA
4._APA 4___	___	___	___	GG	TT	___	___	___	___	___	CC	___	GG	___
5._APA 4___	___	AA	GG	GG	___	___	___	AA	___	___	GG	AA	CC	AA

	99	100	101	102	103	104	105	106	107	108	109	110	111	112
1._APA 4___	___	AA	___	TT	___	___	___	___	___	___	___	___	___	___
2._APA 4___	___	___	TT	___	CC	___	___	___	TT	AA	CC	TT	___	GG
3._APA 4___	GG	AA	___	___	___	AA	GG	CC	___	___	___	AA	AA	___
4._APA 4___	___	AA	___	TT	___	___	___	___	___	___	___	TT	___	___
5._APA 4___	GG	AA	___	___	___	AA	GG	CC	___	___	___	AA	AA	___

	113	114	115	116	117	118	119	120	121	122	123	124	125	126
1._APA 4___	___	___	___	___	___	___	___	TT	___	CC	___	___	___	___
2._APA 4___	TT	___	___	___	GG	GG	___	___	___	GG	___	___	TT	AA
3._APA 4___	___	GG	AA	GG	___	___	AA	AA	GG	CC	AA	GG	___	___
4._APA 4___	___	CC	___	___	___	___	___	TT	CC	GG	AA	___	___	___
5._APA 4___	___	GG	AA	GG	___	___	AA	AA	GG	CC	AA	GG	___	___

	127	128	129	130
1._APA 4___	___	___	___	___	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._APA 4___	___	___	___	___	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._APA 4___	CC	AA	AA	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._APA 4___	___	___	___	___	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._APA 4___	CC	AA	AA	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Center for Forestry Research and Technology Transfer Vietnam

1._APA_4

Jocelyn De Wever et al., 2019

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

2._APA_4 RUQ 843

Lambert Motilal, 2023

Population Assignment:

Ame
0.631 Nan
0.142 Par
0.196

3._APA_4 RUQ 843

Notes: Reading_Collection

4._APA_4 RUQ 843

Dapeng Zhang, 2014

USDA-TARS United States of America

5._APA_4 APA 4_Fld#_26_Plt#_1

Location: Field: 26, Tree: 1

Key to SNP Markers

Key to SNP Markers

1	TcSNP13	2	TcSNP19	3	TcSNP25	4	TcSNP28	5	TcSNP32
6	TcSNP33	7	TcSNP42	8	TcSNP49	9	TcSNP52	10	TcSNP60
11	TcSNP75	12	TcSNP90	13	TcSNP122	14	TcSNP131	15	TcSNP143
16	TcSNP144	17	TcSNP150	18	TcSNP151	19	TcSNP154	20	TcSNP174
21	TcSNP176	22	TcSNP189	23	TcSNP193	24	TcSNP194	25	TcSNP226
26	TcSNP230	27	TcSNP240	28	TcSNP242	29	TcSNP290	30	TcSNP305
31	TcSNP316	32	TcSNP329	33	TcSNP363	34	TcSNP364	35	TcSNP372
36	TcSNP413	37	TcSNP418	38	TcSNP421	39	TcSNP429	40	TcSNP430
41	TcSNP448	42	TcSNP469	43	TcSNP497	44	TcSNP519	45	TcSNP521
46	TcSNP522	47	TcSNP529	48	TcSNP546	49	TcSNP547	50	TcSNP560
51	TcSNP561	52	TcSNP577	53	TcSNP589	54	TcSNP591	55	TcSNP602
56	TcSNP606	57	TcSNP619	58	TcSNP640	59	TcSNP642	60	TcSNP644
61	TcSNP645	62	TcSNP653	63	TcSNP660	64	TcSNP689	65	TcSNP702
66	TcSNP723	67	TcSNP731	68	TcSNP739	69	TcSNP751	70	TcSNP776
71	TcSNP799	72	TcSNP800	73	TcSNP823	74	TcSNP835	75	TcSNP836
76	TcSNP860	77	TcSNP872	78	TcSNP878	79	TcSNP891	80	TcSNP894
81	TcSNP899	82	TcSNP917	83	TcSNP929	84	TcSNP944	85	TcSNP945
86	TcSNP953	87	TcSNP994	88	TcSNP998	89	TcSNP999	90	TcSNP1010
91	TcSNP1019	92	TcSNP1034	93	TcSNP1041	94	TcSNP1053	95	TcSNP1060
96	TcSNP1062	97	TcSNP1063	98	TcSNP1075	99	TcSNP1096	100	TcSNP1111
101	TcSNP1112	102	TcSNP1126	103	TcSNP1144	104	TcSNP1149	105	TcSNP1156
106	TcSNP1175	107	TcSNP1205	108	TcSNP1230	109	TcSNP1237	110	TcSNP1253
111	TcSNP1270	112	TcSNP1275	113	TcSNP1293	114	TcSNP1309	115	TcSNP1350
116	TcSNP1383	117	TcSNP1401	118	TcSNP1404	119	TcSNP1414	120	TcSNP1439
121	TcSNP1442	122	TcSNP1458	123	TcSNP1484	124	TcSNP1520	125	TcSNP1524
126	TcSNP1527	127	Tcm001s00947643	128	Tcm003s01336581	129	Tcm003s07402719	130	Tcm006s26664133