SNP Profiles of "LCT EEN 280"   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1. _GC-08-070-1-92
GGGGAAAACC___CCCTACGGTTTTAGCC
2. _GC-08-070-1-92
GGGGAAAACCCCCCCTACGGTTTTAGCC
3. _GC-08-070-1-92
GGGGAAAACCCCCCCTACGGTTTTAGCC
4. _GC-08-070-1-92
GGGGAAAACCCCCCCTACGGTTTTAGCC
5. _GC-08-070-1-92
GGGGAAAACCCCCCCTACGGTTTTAGCC
6. _GC-08-070-1-92
GGGGAAAACCCCCCCTACGGTTTTAGCC
7. _GC-08-070-1-92
GGGGAAAACCCCCCCTACGGTTTTAGCC
8. _GC-08-070-1-92
GGGGAAAACCCCCCCTACGGTTTTAGCC
9. _8192_5
GG___AA_______________ACGGTT______CC
10. _8192_7
GG___AA_______________ACGGTT______CC
11. _8192_10
GG___AA_______________ACGGTT______CC
12. _8192_11
GG___AA_______________ACGGTT______CC
13. _8192_1_>_FP
GG___AA_______________ACGGTT______CC
14. _8192_2_>_FP
GG___AA_______________ACGGTT______CC
15. _8192_6_>_FP
GG___AA_______________ACGGTT______CC
16. _8192_9_>_FP
GG___AA_______________ACGGTT______CC
17. _4A_A144_T1
GG___AA_______________ACGGTT______CC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1. _GC-08-070-1-92
CCAGGGCCTTAAAATTCT___AAAACGGG
2. _GC-08-070-1-92
CCAGGGCCTTAAAATTCCGGAAAACGGG
3. _GC-08-070-1-92
CCAGGGCCTTAAAATTCCGGAAAACGGG
4. _GC-08-070-1-92
CCAGGGCCTTAAAATTCCGGAAAACGGG
5. _GC-08-070-1-92
CCAGGGCCTTAAAATTCCGGAAAACGGG
6. _GC-08-070-1-92
CCAGGGCCTTAAAATTCCGGAAAACGGG
7. _GC-08-070-1-92
CCAGGGCCTTAAAATTCCGGAAAACGGG
8. _GC-08-070-1-92
CCAGGGCCTTAAAATTCCGGAAAACGGG
9. _8192_5
CCAG___CC_________TT______AA______GG
10. _8192_7
CCAG___CC_________TT______AA______GG
11. _8192_10
CCAG___CC_________TT______AA______GG
12. _8192_11
CCAG___CC_________TT______AA______GG
13. _8192_1_>_FP
CCAG___CC_________TT______AA______GG
14. _8192_2_>_FP
CCAG___CC_________TT______AA______GG
15. _8192_6_>_FP
CCAG___CC_________TT______AA______GG
16. _8192_9_>_FP
CCAG___CC_________TT______AA______GG
17. _4A_A144_T1
___AG___CC_________TT______AA______GG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1. _GC-08-070-1-92
ACAACCGGGGGGGGCCCCAGCT___AAAA
2. _GC-08-070-1-92
ACAACCGGGGGGGGCCCCAGCT___AAAA
3. _GC-08-070-1-92
ACAACCGGGGGGGGCCCCAGCT___AAAA
4. _GC-08-070-1-92
ACAACCGGGGGGGGCCCCAGCT___AAAA
5. _GC-08-070-1-92
ACAACCGGGGGGGGCCCCAGCT___AAAA
6. _GC-08-070-1-92
ACAACCGGGGGGGGCCCCAGCT___AAAA
7. _GC-08-070-1-92
ACAACCGGGGGGGGCCCCAGCT___AAAA
8. _GC-08-070-1-92
ACAACCGGGGGGGGCCCCAGCT___AAAA
9. _8192_5
___AACC___GG___GGCC______CT_________
10. _8192_7
___AACC___GG___GGCC______CT_________
11. _8192_10
___AACC___GG___GGCC______CT_________
12. _8192_11
___AACC___GG___GGCC______CT_________
13. _8192_1_>_FP
___AACC___GG___GGCC______CT_________
14. _8192_2_>_FP
___AACC___GG___GGCC______CT_________
15. _8192_6_>_FP
___AACC___GG___GGCC______CT_________
16. _8192_9_>_FP
___AACC___GG___GGCC______CT_________
17. _4A_A144_T1
___AACC___GG___GGCC______CTGG______
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1. _GC-08-070-1-92
CCTTGGAATTTTTTCCCCCGGGTTCCGG
2. _GC-08-070-1-92
CCTTGGAATTTTTTCCCCCGGGTTCCGG
3. _GC-08-070-1-92
CCTTGGAATTTTTTCCCCCGGGTTCCGG
4. _GC-08-070-1-92
CCTTGGAATTTTTTCCCCCGGGTTCCGG
5. _GC-08-070-1-92
CCTTGGAATTTTTTCCCCCGGGTTCCGG
6. _GC-08-070-1-92
CCTTGGAAGTTTTTCCCCCGGGTTCCGG
7. _GC-08-070-1-92
CCTTGGAATTTTTTCCCCCGGGTTCCGG
8. _GC-08-070-1-92
CCTTGGAATTTTTTCCCCCGGGTTCCGG
9. _8192_5
______GG__________________CG___TT______
10. _8192_7
______GG__________________CG___TT______
11. _8192_10
______GG__________________CG___TT______
12. _8192_11
______GG__________________CG___TT______
13. _8192_1_>_FP
______GG__________________CG___TT______
14. _8192_2_>_FP
______GG__________________CG___TT______
15. _8192_6_>_FP
______GG__________________CG___TT______
16. _8192_9_>_FP
______GG__________________CG___TT______
17. _4A_A144_T1
______GG__________________CG___TT______
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1. _GC-08-070-1-92
TTCGCCAACTAACCTTCCCCGGGGAACC
2. _GC-08-070-1-92
TTCGCCAACTAACCTTCCCCGGGGAACC
3. _GC-08-070-1-92
TTCGCCAACTAACCTTCCCCGGGGAACC
4. _GC-08-070-1-92
TTCGCCAACTAACCTTCCCCGGGGAACC
5. _GC-08-070-1-92
TTCGCCAACTAACCTTCCCCGGGGAACC
6. _GC-08-070-1-92
TTCGCCAACTAACCTTCCCCGGGGAACC
7. _GC-08-070-1-92
TTCGCCAACTAACCTTCCCCGGGGAACC
8. _GC-08-070-1-92
TTCGCCAACTAACCTTCCCCGGGGAACC
9. _8192_5
TTCG___AACTAA_________CCGG___AA___
10. _8192_7
TTCG___AACTAA_________CCGG___AA___
11. _8192_10
TTCG___AACTAA_________CCGG___AA___
12. _8192_11
TTCG___AACTAA_________CCGG___AA___
13. _8192_1_>_FP
TTCG___AACTAA_________CCGG___AA___
14. _8192_2_>_FP
TTCG___AACTAA_________CCGG___AA___
15. _8192_6_>_FP
TTCG___AACTAA_________CCGG___AA___
16. _8192_9_>_FP
TTCG___AACTAA_________CCGG___AA___
17. _4A_A144_T1
TTCG___AACTAA_________CCGG___AA___
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1. _GC-08-070-1-92
AGTTCCTTCTTTTTAAGGTTTTAAGGTT
2. _GC-08-070-1-92
AGTTCCTTCTTTTTAAGGTTTTAAGGTT
3. _GC-08-070-1-92
AGTTCCTTCTTTTTAAGGTTTTAAGGTT
4. _GC-08-070-1-92
AGTTCCTTCTTTTTAAGGTTTTAAGGTT
5. _GC-08-070-1-92
AGTTCCTTCTTTTTAAGGTTTTAAGGTT
6. _GC-08-070-1-92
AGTTCCTTCTTTTTAAGGTTTTAAGGTT
7. _GC-08-070-1-92
AGTTCCTTCTTTTTAAGGTTTTAAGGTT
8. _GC-08-070-1-92
AGTTCCTTCTTTTTAAGGTTTTAAGGTT
9. _8192_5
______CC______TT______GGTT___AA___TT
10. _8192_7
______CC______TT______GGTT___AA___TT
11. _8192_10
______CC______TT______GGTT___AA___TT
12. _8192_11
______CC______TT______GGTT___AA___TT
13. _8192_1_>_FP
______CC______TT______GGTT___AA___TT
14. _8192_2_>_FP
______CC______TT______GGTT___AA___TT
15. _8192_6_>_FP
______CC______TT______GGTT___AA___TT
16. _8192_9_>_FP
______CC______TT______GGTT___AA___TT
17. _4A_A144_T1
______CC______TT______GGTT___AC___TT
 85 86 87 88 89 90 91 92 93 94     
1. _GC-08-070-1-92
CCTTCCGGCCAAGGCCGGCCX_XX_XX_XX_X
2. _GC-08-070-1-92
CCTTCCGGCCAAGGCCGGCCX_XX_XX_XX_X
3. _GC-08-070-1-92
CCTTCCGGCCAAGGCCGGCCX_XX_XX_XX_X
4. _GC-08-070-1-92
CCTTCCGGCCAAGGCCGGCCX_XX_XX_XX_X
5. _GC-08-070-1-92
CCTTCCGGCCAAGGCCGGCCX_XX_XX_XX_X
6. _GC-08-070-1-92
CCTTCCGGCCAAGGCCGGCCX_XX_XX_XX_X
7. _GC-08-070-1-92
CCTTCCGGCCAAGGCCGGCCX_XX_XX_XX_X
8. _GC-08-070-1-92
CCTTCCGGCCAAGGCCGGCCX_XX_XX_XX_X
9. _8192_5
___TTCCGGCC_______________X_XX_XX_XX_X
10. _8192_7
___TTCCGGCC_______________X_XX_XX_XX_X
11. _8192_10
___TTCCGGCC_______________X_XX_XX_XX_X
12. _8192_11
___TTCCGGCC_______________X_XX_XX_XX_X
13. _8192_1_>_FP
___TTCCGGCC_______________X_XX_XX_XX_X
14. _8192_2_>_FP
___TTCCGGCC_______________X_XX_XX_XX_X
15. _8192_6_>_FP
___TTCCGGCC_______________X_XX_XX_XX_X
16. _8192_9_>_FP
___TTCCGGCC_______________X_XX_XX_XX_X
17. _4A_A144_T1
___TTCCGGCC_______________X_XX_XX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._LCT_EEN_280 GC-08-070-1-92
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018
2._LCT_EEN_280 GC-08-070-1-92
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018
3._LCT_EEN_280 GC-08-070-1-92
Location: Tree: 5
Notes: 5
 Mars, 2018
4._LCT_EEN_280 GC-08-070-1-92
Location: Tree: 6
Notes: 6 > FP3
 Mars, 2018
5._LCT_EEN_280 GC-08-070-1-92
Location: Tree: 7
Notes: 7
 Mars, 2018
6._LCT_EEN_280 GC-08-070-1-92
Location: Tree: 9
Notes: 9 > FP4
 Mars, 2018
7._LCT_EEN_280 GC-08-070-1-92
Location: Tree: 10
Notes: 10
 Mars, 2018
8._LCT_EEN_280 GC-08-070-1-92
Location: Tree: 11
Notes: 11
 Mars, 2018
9._LCT_EEN_280
Location: 8192 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016
10._LCT_EEN_280
Location: 8192 7
 Dapeng Zhang, 2016
11._LCT_EEN_280
Location: 8192 10
 Dapeng Zhang, 2016
12._LCT_EEN_280
Location: 8192 11
 Dapeng Zhang, 2016
13._LCT_EEN_280
Location: 8192 1 > FP
 Dapeng Zhang, 2016
14._LCT_EEN_280
Location: 8192 2 > FP
 Dapeng Zhang, 2016
15._LCT_EEN_280
Location: 8192 6 > FP
 Dapeng Zhang, 2016
16._LCT_EEN_280
Location: 8192 9 > FP
 Dapeng Zhang, 2016

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

17._LCT_EEN_280
Location: 4A A144 T1
 Dapeng Zhang, 2016

  Key to SNP Markers

1TcSNP25 2TcSNP28 3TcSNP32 4TcSNP42 5TcSNP60
6TcSNP75 7TcSNP90 8TcSNP122 9TcSNP144 10TcSNP150
11TcSNP151 12TcSNP154 13TcSNP174 14TcSNP193 15TcSNP226
16TcSNP230 17TcSNP240 18TcSNP242 19TcSNP316 20TcSNP329
21TcSNP364 22TcSNP372 23TcSNP413 24TcSNP418 25TcSNP429
26TcSNP430 27TcSNP448 28TcSNP469 29TcSNP521 30TcSNP529
31TcSNP534 32TcSNP547 33TcSNP560 34TcSNP561 35TcSNP577
36TcSNP591 37TcSNP602 38TcSNP606 39TcSNP619 40TcSNP645
41TcSNP653 42TcSNP689 43TcSNP701 44TcSNP702 45TcSNP723
46TcSNP731 47TcSNP751 48TcSNP776 49TcSNP799 50TcSNP823
51TcSNP836 52TcSNP872 53TcSNP878 54TcSNP891 55TcSNP894
56TcSNP899 57TcSNP917 58TcSNP929 59TcSNP944 60TcSNP953
61TcSNP994 62TcSNP998 63TcSNP999 64TcSNP1034 65TcSNP1041
66TcSNP1060 67TcSNP1062 68TcSNP1063 69TcSNP1075 70TcSNP1096
71TcSNP1111 72TcSNP1126 73TcSNP1144 74TcSNP1149 75TcSNP1156
76TcSNP1165 77TcSNP1175 78TcSNP1242 79TcSNP1253 80TcSNP1270
81TcSNP1309 82TcSNP1350 83TcSNP1383 84TcSNP1414 85TcSNP1439
86TcSNP1442 87TcSNP1458 88TcSNP1484 89TcSNP1520 90Tcm001s00947643
91Tcm002s20575712 92Tcm003s01336581 93Tcm003s07402719 94Tcm006s26664133