SNP Profiles of "NA 45" View Data

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
1. _GC-01-111-6-08	GG	GG	TT	GG	CC	TT	CC	TT	AC	GG	CC	TT	GG	AA
2. _GC-01-111-6-08	GG	GG	TT	GG	CC	TT	CC	TT	AC	GG	CC	TT	GG	AA
3. _GC-01-111-6-08	GG	GG	TT	GG	CC	TT	CC	TT	AC	GG	CC	TT	GG	AA
4. _GC-01-111-6-08	GG	GG	TT	GG	CC	TT	CC	TT	AC	GG	CC	TT	GG	AA
5. _GC-01-111-6-08	GG	GG	TT	GG	CC	TT	CC	TT	AC	GG	CT	TT	GG	AA
6. _GC-01-111-6-08	GG	GG	TT	GG	CC	TT	CC	TT	AC	GG	CC	TT	GG	AA
7. _GC-01-111-6-08	GG	GG	TT	GG	CC	TT	CC	TT	AC	GG	CC	TT	GG	AA
8. _GC-01-111-6-08	GG	GG	TT	GG	CC	TT	CC	TT	AC	GG	___	TT	GG	AA
9. _1608_2	GG	___	TT	___	___	___	___	___	AC	GG	CC	___	___	AA
10. _1608_4	GG	___	TT	___	___	___	___	___	AC	GG	CC	___	___	AA
11. _1608_9	GG	___	TT	___	___	___	___	___	AC	GG	CT	___	___	AA
12. _1608_10	GG	___	TT	___	___	___	___	___	AC	GG	CC	___	___	AA
13. _1608_1_>_FP	GG	___	TT	___	___	___	___	___	AC	GG	CC	___	___	AA
14. _1608_11_>_F	GG	___	TT	___	___	___	___	___	AC	GG	CC	___	___	AA
15. _1608_14_>_F	GG	___	TT	___	___	___	___	___	AC	GG	___	___	___	AA
16. _1608_3_>_FP	GG	___	TT	___	___	___	___	___	AC	GG	CC	___	___	AA
17. _Marper_D_673	GG	___	TT	___	___	___	___	___	AC	GG	CC	___	___	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
1. _GC-01-111-6-08	CG	AG	GG	CT	AA	GG	GG	AA	CT	GG	GG	AA	CC	AA
2. _GC-01-111-6-08	CG	AG	GG	CT	AA	GG	GG	AA	CT	GG	GG	AA	CC	AA
3. _GC-01-111-6-08	CG	AG	GG	CT	AA	GG	GG	AA	CT	GG	GG	AA	CC	AA
4. _GC-01-111-6-08	CG	AG	GG	CT	AA	GG	GG	AA	CT	GG	GG	AA	CC	AA
5. _GC-01-111-6-08	CG	AG	GG	CT	AA	GG	GG	AA	CT	GG	GG	AA	CC	AA
6. _GC-01-111-6-08	CG	AG	GG	CT	AA	GG	GG	AA	CT	GG	GG	AA	CC	AA
7. _GC-01-111-6-08	CG	AG	GG	CT	AA	GG	GG	AA	CT	GG	GG	AA	CC	AA
8. _GC-01-111-6-08	CG	AG	GG	CT	AA	GG	GG	AA	CT	GG	GG	AA	CC	AA
9. _1608_2	CG	AG	___	CT	___	___	___	AA	___	___	GG	___	___	AA
10. _1608_4	CG	AG	___	CT	___	___	___	AA	___	___	GG	___	___	AA
11. _1608_9	CG	AG	___	CT	___	___	___	AA	___	___	GG	___	___	AA
12. _1608_10	CG	AG	___	CT	___	___	___	AA	___	___	GG	___	___	AA
13. _1608_1_>_FP	CG	AG	___	CT	___	___	___	AA	___	___	GG	___	___	AA
14. _1608_11_>_F	CG	AG	___	CT	___	___	___	AA	___	___	GG	___	___	AA
15. _1608_14_>_F	CG	AG	___	CT	___	___	___	AA	___	___	GG	___	___	AA
16. _1608_3_>_FP	CG	AG	___	CT	___	___	___	AA	___	___	GG	___	___	AA
17. _Marper_D_673	CG	AG	___	CT	___	___	___	AA	___	___	GG	___	___	AA

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
1. _GC-01-111-6-08	AA	CC	TT	GG	GT	GG	GG	AA	CC	AA	CC	AA	AA	AA
2. _GC-01-111-6-08	AA	CC	TT	GG	GT	GG	GG	AA	CC	AA	CC	AA	AA	AA
3. _GC-01-111-6-08	AA	CC	TT	GG	GT	GG	GG	AA	CC	AA	CC	AA	AA	AA
4. _GC-01-111-6-08	AA	CC	TT	GG	GT	GG	GG	AA	CC	AA	CC	AA	AA	AA
5. _GC-01-111-6-08	AA	CC	TT	GG	GT	GG	GG	AA	CC	AA	CC	AA	AA	AA
6. _GC-01-111-6-08	AA	CC	TT	GG	GT	GG	GG	AA	CC	AA	CC	AA	AA	AA
7. _GC-01-111-6-08	AA	CC	TT	GG	GT	GG	GG	AA	CC	AA	CC	AA	AA	AA
8. _GC-01-111-6-08	AA	CC	TT	GG	GT	GG	GG	AA	CC	AA	CC	AA	AA	AA
9. _1608_2	___	CC	TT	___	GT	___	GG	AA	___	___	CC	AA	___	___
10. _1608_4	___	CC	TT	___	GT	___	GG	AA	___	___	CC	AA	___	___
11. _1608_9	___	CC	TT	___	GT	___	GG	AA	___	___	CC	AA	___	___
12. _1608_10	___	CC	TT	___	GT	___	GG	AA	___	___	CC	AA	___	___
13. _1608_1_>_FP	___	CC	TT	___	GT	___	GG	AA	___	___	CC	AA	___	___
14. _1608_11_>_F	___	CC	TT	___	GT	___	GG	AA	___	___	CC	AA	___	___
15. _1608_14_>_F	___	CC	TT	___	GT	___	GG	AA	___	___	CC	AA	___	___
16. _1608_3_>_FP	___	CC	TT	___	GT	___	GG	AA	___	___	CC	AA	___	___
17. _Marper_D_673	___	CC	TT	___	GT	___	GG	AA	___	___	CC	AA	___	___

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
1. _GC-01-111-6-08	TT	CC	GG	GG	TT	GG	TT	CC	GG	CG	CC	CC	CC	GG
2. _GC-01-111-6-08	TT	CC	GG	GG	TT	GG	TT	CC	GG	CG	CC	CC	CC	GG
3. _GC-01-111-6-08	TT	CC	GG	GG	TT	GG	TT	CC	GG	CG	CC	CC	CC	GG
4. _GC-01-111-6-08	TT	CC	GG	GG	TT	GG	TT	CC	GG	CG	CC	CC	CC	GG
5. _GC-01-111-6-08	TT	CC	GG	GG	TT	GG	TT	CC	GG	CG	CC	CC	CC	GG
6. _GC-01-111-6-08	TT	CC	GG	GG	TT	GG	TT	CC	GG	CG	CC	CC	CC	GG
7. _GC-01-111-6-08	TT	CC	GG	GG	TT	GG	TT	CC	GG	CG	CC	CC	CC	GG
8. _GC-01-111-6-08	TT	CC	GG	GG	TT	GG	TT	CC	GG	CG	CC	CC	CC	GG
9. _1608_2	___	___	GG	___	___	___	___	___	___	CG	___	CC	___	___
10. _1608_4	___	___	GG	___	___	___	___	___	___	CG	___	CC	___	___
11. _1608_9	___	___	GG	___	___	___	___	___	___	CG	___	CC	___	___
12. _1608_10	___	___	GG	___	___	___	___	___	___	CG	___	CC	___	___
13. _1608_1_>_FP	___	___	GG	___	___	___	___	___	___	CG	___	CC	___	___
14. _1608_11_>_F	___	___	GG	___	___	___	___	___	___	CG	___	CC	___	___
15. _1608_14_>_F	___	___	GG	___	___	___	___	___	___	CG	___	CC	___	___
16. _1608_3_>_FP	___	___	GG	___	___	___	___	___	___	CG	___	CC	___	___
17. _Marper_D_673	___	___	GG	___	___	___	___	___	___	CG	___	CC	___	___

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
1. _GC-01-111-6-08	CT	GG	CC	AA	TT	AG	CC	TT	CC	CC	GG	GG	AA	CC
2. _GC-01-111-6-08	CT	GG	CC	AA	TT	AG	CC	TT	CC	CC	GG	GG	AA	CC
3. _GC-01-111-6-08	CT	GG	CC	AA	TT	AG	CC	TT	CC	CC	GG	GG	AA	CC
4. _GC-01-111-6-08	CT	GG	CC	AA	TT	AG	CC	TT	CC	CC	GG	GG	AA	CC
5. _GC-01-111-6-08	CT	GG	CC	AA	TT	AG	CC	TT	CC	CC	GG	GG	AA	CC
6. _GC-01-111-6-08	CT	GG	CC	AA	TT	AG	CC	TT	CC	CC	GG	GG	AA	CC
7. _GC-01-111-6-08	CT	GG	CC	AA	TT	AG	CC	TT	CC	CC	GG	GG	AA	CC
8. _GC-01-111-6-08	CT	GG	CC	AA	TT	AG	CC	TT	CC	CC	GG	GG	AA	CC
9. _1608_2	CT	GG	___	AA	TT	AG	___	___	___	CC	GG	___	AA	___
10. _1608_4	CT	GG	___	AA	TT	AG	___	___	___	CC	GG	___	AA	___
11. _1608_9	CT	GG	___	AA	TT	AG	___	___	___	CC	GG	___	AA	___
12. _1608_10	CT	GG	___	AA	TT	AG	___	___	___	CC	GG	___	AA	___
13. _1608_1_>_FP	CT	GG	___	AA	TT	AG	___	___	___	CC	GG	___	AA	___
14. _1608_11_>_F	CT	GG	___	AA	TT	AG	___	___	___	CC	GG	___	AA	___
15. _1608_14_>_F	CT	GG	___	AA	TT	AG	___	___	___	CC	GG	___	AA	___
16. _1608_3_>_FP	CT	GG	___	AA	TT	AG	___	___	___	CC	GG	___	AA	___
17. _Marper_D_673	CT	GG	___	AA	TT	AG	___	___	___	CC	GG	___	AA	___

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
1. _GC-01-111-6-08	GG	TT	CC	TT	TT	CC	GG	CC	TT	CT	TT	___	GG	TT
2. _GC-01-111-6-08	GG	TT	CC	TT	TT	CC	GG	CC	TT	CT	TT	___	GG	TT
3. _GC-01-111-6-08	GG	TT	CC	TT	TT	CC	GG	CC	TT	CT	TT	___	GG	TT
4. _GC-01-111-6-08	GG	TT	CC	TT	TT	CC	GG	CC	TT	CT	TT	___	GG	TT
5. _GC-01-111-6-08	GG	TT	CC	TT	TT	CC	GG	CC	TT	CT	TT	___	GG	TT
6. _GC-01-111-6-08	GG	TT	CC	TT	TT	CC	GG	CC	TT	CT	TT	___	GG	TT
7. _GC-01-111-6-08	GG	TT	CC	TT	TT	CC	GG	CC	TT	CT	TT	___	GG	TT
8. _GC-01-111-6-08	GG	TT	CC	TT	TT	CC	GG	CC	TT	CT	TT	___	GG	TT
9. _1608_2	___	___	CC	___	___	CC	___	___	TT	CT	___	___	___	TT
10. _1608_4	___	___	CC	___	___	CC	___	___	TT	CT	___	___	___	TT
11. _1608_9	___	___	CC	___	___	CC	___	___	TT	CT	___	___	___	TT
12. _1608_10	___	___	CC	___	___	CC	___	___	TT	CT	___	___	___	TT
13. _1608_1_>_FP	___	___	CC	___	___	CC	___	___	TT	CT	___	___	___	TT
14. _1608_11_>_F	___	___	CC	___	___	CC	___	___	TT	CT	___	___	___	TT
15. _1608_14_>_F	___	___	CC	___	___	CC	___	___	TT	CT	___	___	___	TT
16. _1608_3_>_FP	___	___	CC	___	___	CC	___	___	TT	CT	___	___	___	TT
17. _Marper_D_673	___	___	CC	___	___	CC	___	___	TT	CT	___	CC	___	TT

	85	86	87	88	89	90	91	92	93	94
1. _GC-01-111-6-08	CC	TT	CG	AA	CC	CC	AA	AA	AA	AC	X_X	X_X	X_X	X_X
2. _GC-01-111-6-08	CC	TT	CG	AA	CC	CC	AA	AA	AA	AC	X_X	X_X	X_X	X_X
3. _GC-01-111-6-08	CC	TT	CG	AA	CC	CC	AA	AA	AA	AC	X_X	X_X	X_X	X_X
4. _GC-01-111-6-08	CC	TT	CG	AA	CC	CC	AA	AA	AA	AC	X_X	X_X	X_X	X_X
5. _GC-01-111-6-08	CC	TT	CG	AA	CC	CC	AA	AA	___	AC	X_X	X_X	X_X	X_X
6. _GC-01-111-6-08	CC	TT	CG	AA	CC	CC	AA	AA	AA	AC	X_X	X_X	X_X	X_X
7. _GC-01-111-6-08	CC	TT	CG	AA	CC	CC	AA	AA	AA	AC	X_X	X_X	X_X	X_X
8. _GC-01-111-6-08	CC	TT	CG	AA	CC	CC	AA	AA	AA	AC	X_X	X_X	X_X	X_X
9. _1608_2	___	TT	CG	AA	CC	___	___	___	___	___	X_X	X_X	X_X	X_X
10. _1608_4	___	TT	CG	AA	CC	___	___	___	___	___	X_X	X_X	X_X	X_X
11. _1608_9	___	TT	CG	AA	CC	___	___	___	___	___	X_X	X_X	X_X	X_X
12. _1608_10	___	TT	CG	AA	CC	___	___	___	___	___	X_X	X_X	X_X	X_X
13. _1608_1_>_FP	___	TT	CG	AA	CC	___	___	___	___	___	X_X	X_X	X_X	X_X
14. _1608_11_>_F	___	TT	CG	AA	CC	___	___	___	___	___	X_X	X_X	X_X	X_X
15. _1608_14_>_F	___	TT	CG	AA	CC	___	___	___	___	___	X_X	X_X	X_X	X_X
16. _1608_3_>_FP	___	TT	CG	AA	CC	___	___	___	___	___	X_X	X_X	X_X	X_X
17. _Marper_D_673	___	TT	CG	AA	CC	___	___	___	___	___	X_X	X_X	X_X	X_X

Mars Center for Cocoa Science Brazil

1._NA_45 GC-01-111-6-08

Location: Tree: 1

Notes: 1 > FP1

2._NA_45 GC-01-111-6-08

Location: Tree: 2

Notes: 2

3._NA_45 GC-01-111-6-08

Location: Tree: 3

Notes: 3 > FP4

4._NA_45 GC-01-111-6-08

Location: Tree: 4

Notes: 4

5._NA_45 GC-01-111-6-08

Location: Tree: 9

Notes: 9

6._NA_45 GC-01-111-6-08

Location: Tree: 10

Notes: 10

7._NA_45 GC-01-111-6-08

Location: Tree: 11

Notes: 11 > FP2

8._NA_45 GC-01-111-6-08

Location: Tree: 14

Notes: 14 > FP3

9._NA_45

Location: 1608 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

10._NA_45

Location: 1608 4

Dapeng Zhang, 2016

11._NA_45

Location: 1608 9

Dapeng Zhang, 2016

12._NA_45

Location: 1608 10

Dapeng Zhang, 2016

13._NA_45

Location: 1608 1 > FP

Dapeng Zhang, 2016

14._NA_45

Location: 1608 11 > F

Dapeng Zhang, 2016

15._NA_45

Location: 1608 14 > F

Dapeng Zhang, 2016

16._NA_45

Location: 1608 3 > FP

Dapeng Zhang, 2016

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

17._NA_45

Location: Marper D 673

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP28	3	TcSNP32	4	TcSNP42	5	TcSNP60
6	TcSNP75	7	TcSNP90	8	TcSNP122	9	TcSNP144	10	TcSNP150
11	TcSNP151	12	TcSNP154	13	TcSNP174	14	TcSNP193	15	TcSNP226
16	TcSNP230	17	TcSNP240	18	TcSNP242	19	TcSNP316	20	TcSNP329
21	TcSNP364	22	TcSNP372	23	TcSNP413	24	TcSNP418	25	TcSNP429
26	TcSNP430	27	TcSNP448	28	TcSNP469	29	TcSNP521	30	TcSNP529
31	TcSNP534	32	TcSNP547	33	TcSNP560	34	TcSNP561	35	TcSNP577
36	TcSNP591	37	TcSNP602	38	TcSNP606	39	TcSNP619	40	TcSNP645
41	TcSNP653	42	TcSNP689	43	TcSNP701	44	TcSNP702	45	TcSNP723
46	TcSNP731	47	TcSNP751	48	TcSNP776	49	TcSNP799	50	TcSNP823
51	TcSNP836	52	TcSNP872	53	TcSNP878	54	TcSNP891	55	TcSNP894
56	TcSNP899	57	TcSNP917	58	TcSNP929	59	TcSNP944	60	TcSNP953
61	TcSNP994	62	TcSNP998	63	TcSNP999	64	TcSNP1034	65	TcSNP1041
66	TcSNP1060	67	TcSNP1062	68	TcSNP1063	69	TcSNP1075	70	TcSNP1096
71	TcSNP1111	72	TcSNP1126	73	TcSNP1144	74	TcSNP1149	75	TcSNP1156
76	TcSNP1165	77	TcSNP1175	78	TcSNP1242	79	TcSNP1253	80	TcSNP1270
81	TcSNP1309	82	TcSNP1350	83	TcSNP1383	84	TcSNP1414	85	TcSNP1439
86	TcSNP1442	87	TcSNP1458	88	TcSNP1484	89	TcSNP1520	90	Tcm001s00947643
91	Tcm002s20575712	92	Tcm003s01336581	93	Tcm003s07402719	94	Tcm006s26664133