SNP Profiles of "PA 120 [PER]"   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1. _PA120[PER]
__________________________________________
2. _RUQ_852
TTCC_________TT___CCGG____________GT
3. _RUQ_852B
TTCC_________TT___CCGG____________GT
4. _RUQ_852
______GGCCAT___GG______GGAACCAA___
5. _RUQ_852
______________________________TTCC______
6. _MITC-000291
______GGCCAT___AG______GGAACCAA___
7. _PA_120_[PER]_Fld#_172_Plt#_5
______GGCCAA___GG______GGAACCAA___
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1. _PA120[PER]
___AA___TT___GG______AC___GGAA______
2. _RUQ_852
ATCC____________CCGG___GG___AA______
3. _RUQ_852B
___CC____________CCGG___GG___AA______
4. _RUQ_852
___CCCCAGTTGG______AC___GGAAGGGG
5. _RUQ_852
___CCGGCT___GG______AC___CCAA___CC
6. _MITC-000291
___ACACAGAAGG______AA___GGAGGGAG
7. _PA_120_[PER]_Fld#_172_Plt#_5
___CCCCGGTTGG______AC___GGAGGGGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1. _PA120[PER]
_______________GGAACT____________CC___
2. _RUQ_852
TTAA___GGAA____________CT____________
3. _RUQ_852B
TTAA___GGAA____________CT____________
4. _RUQ_852
______TTGG___GGAAAGAG___GGATGG___
5. _RUQ_852
_________GG___GGAA_______________CCAA
6. _MITC-000291
______ATGG___GGAAAAGG___GGATCG___
7. _PA_120_[PER]_Fld#_172_Plt#_5
______TTGG___GGAAGGGG___GGATGG___
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1. _PA120[PER]
______________________________CG___CCCC
2. _RUQ_852
___AA___CCAA___GG_________GGAACCTT
3. _RUQ_852B
___AA___CCAA___GG_________GGAACC___
4. _RUQ_852
GG___CC___AA______AGAAGGGG___CCAA
5. _RUQ_852
____________AACC______TT___GG___CCTT
6. _MITC-000291
AA___AA___CC______AGACAGCC___AAGG
7. _PA_120_[PER]_Fld#_172_Plt#_5
GG___CC___AC______AGACAGCG___CCAA
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1. _PA120[PER]
AG____________________________________GT
2. _RUQ_852
______CCGGCCAA___CC___CTGGGGTT___
3. _RUQ_852B
______CCGGCCAA___CC___CTGGGGTT___
4. _RUQ_852
___AA____________AA___AA___CCGG___AA
5. _RUQ_852
___TT_____________________CTGGGG______
6. _MITC-000291
___AG____________AA___AA___CCGG___AA
7. _PA_120_[PER]_Fld#_172_Plt#_5
___AA____________GG___AA___CCAG___AA
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1. _PA120[PER]
__________________AGCGGGCT____________
2. _RUQ_852
______TTAAAATT___GG_________AG______
3. _RUQ_852B
______TTAAAATT___GG_________AG______
4. _RUQ_852
CCAA___AA___CGGGCC___GGGGAGAACG
5. _RUQ_852
___TT___AA_________GGCCCC____________
6. _MITC-000291
CCAA___AC___CCAGGG___GGGGGGAGGG
7. _PA_120_[PER]_Fld#_172_Plt#_5
CCAA___AA___CGGGCC___GGGGGGAGGG
 85 86 87 88 89 90 91 92 93 94 95 96 97 98
1. _PA120[PER]
_________CT_______________CC___CT______
2. _RUQ_852
___CC______GGCTTTAA______CC___GG___
3. _RUQ_852B
___CC______GGCTTTAA______CC___GG___
4. _RUQ_852
GG___AAAGGG_________AA______GGGGCC
5. _RUQ_852
____________GG__________________CC___GG
6. _MITC-000291
GG___ATAGAA_________AA______GGGGCC
7. _PA_120_[PER]_Fld#_172_Plt#_5
GG___AAAGAG_________AA______GGGGCC
 99 100 101 102 103 104 105 106 107 108 109 110 111 112
1. _PA120[PER]
______GG___TT___________________________
2. _RUQ_852
_________CT___CC_________GGAACCTT___
3. _RUQ_852B
_________CT___CC_________GGAA___TT___
4. _RUQ_852
AAGGGG_________AAAGAC_________AAAG
5. _RUQ_852
______GG___TT_____________________TT___
6. _MITC-000291
AAGGGG_________AAAGCC_________AAAA
7. _PA_120_[PER]_Fld#_172_Plt#_5
AAGGGG_________AAAGAC_________AAGG
 113 114 115 116 117 118 119 120 121 122 123 124 125 126
1. _PA120[PER]
________________________CT___GG_________
2. _RUQ_852
GGTT_________GGGG_________CG______CT
3. _RUQ_852B
GGTT_________GGGG_________CG______CT
4. _RUQ_852
______GGACGG______AAAGAGCGGGAG___
5. _RUQ_852
______CC_______________CTCTCGGG______
6. _MITC-000291
______AAACGG______AGGGAACCAAGG___
7. _PA_120_[PER]_Fld#_172_Plt#_5
______AGACGG______AAGGAGCGGGGG___
 127 128 129 130 131          
1. _PA120[PER]
_______________X_XX_XX_XX_XX_XX_XX_XX_XX_X
2. _RUQ_852
AT____________X_XX_XX_XX_XX_XX_XX_XX_XX_X
3. _RUQ_852B
AT____________X_XX_XX_XX_XX_XX_XX_XX_XX_X
4. _RUQ_852
___AAACGGACX_XX_XX_XX_XX_XX_XX_XX_XX_X
5. _RUQ_852
_______________X_XX_XX_XX_XX_XX_XX_XX_XX_X
6. _MITC-000291
___ACAAAAAAX_XX_XX_XX_XX_XX_XX_XX_XX_X
7. _PA_120_[PER]_Fld#_172_Plt#_5
___ACACAGAAX_XX_XX_XX_XX_XX_XX_XX_XX_X

 Key

Center for Forestry Research and Technology Transfer Vietnam

1._PA_120_[PER]
 Jocelyn De Wever et al., 2019

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

2._PA_120_[PER] RUQ 852
 Lambert Motilal, 2023
3._PA_120_[PER] RUQ 852B
 Lambert Motilal, 2023
4._PA_120_[PER] RUQ 852
Notes: Reading_Collection
 Mars, 2018
5._PA_120_[PER] RUQ 852
 Dapeng Zhang, 2014

USDA-SHRS United States of America

6._PA_120_[PER] MITC-000291
 Mars, 2018

USDA-TARS United States of America

7._PA_120_[PER] PA 120 [PER]_Fld#_172_Plt#_5
Location: Field: 172, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP25 4TcSNP28 5TcSNP32
6TcSNP33 7TcSNP42 8TcSNP49 9TcSNP52 10TcSNP60
11TcSNP75 12TcSNP90 13TcSNP122 14TcSNP131 15TcSNP143
16TcSNP144 17TcSNP150 18TcSNP151 19TcSNP154 20TcSNP174
21TcSNP176 22TcSNP189 23TcSNP193 24TcSNP194 25TcSNP226
26TcSNP230 27TcSNP240 28TcSNP242 29TcSNP290 30TcSNP305
31TcSNP316 32TcSNP329 33TcSNP363 34TcSNP364 35TcSNP372
36TcSNP413 37TcSNP418 38TcSNP421 39TcSNP429 40TcSNP430
41TcSNP448 42TcSNP469 43TcSNP497 44TcSNP519 45TcSNP521
46TcSNP522 47TcSNP529 48TcSNP534 49TcSNP546 50TcSNP547
51TcSNP560 52TcSNP561 53TcSNP577 54TcSNP589 55TcSNP591
56TcSNP602 57TcSNP606 58TcSNP619 59TcSNP640 60TcSNP642
61TcSNP644 62TcSNP645 63TcSNP653 64TcSNP660 65TcSNP689
66TcSNP702 67TcSNP723 68TcSNP731 69TcSNP739 70TcSNP751
71TcSNP776 72TcSNP799 73TcSNP800 74TcSNP823 75TcSNP835
76TcSNP836 77TcSNP860 78TcSNP872 79TcSNP878 80TcSNP891
81TcSNP894 82TcSNP899 83TcSNP917 84TcSNP929 85TcSNP944
86TcSNP945 87TcSNP953 88TcSNP994 89TcSNP998 90TcSNP999
91TcSNP1010 92TcSNP1019 93TcSNP1034 94TcSNP1041 95TcSNP1053
96TcSNP1060 97TcSNP1062 98TcSNP1063 99TcSNP1075 100TcSNP1096
101TcSNP1111 102TcSNP1112 103TcSNP1126 104TcSNP1144 105TcSNP1149
106TcSNP1156 107TcSNP1175 108TcSNP1205 109TcSNP1230 110TcSNP1237
111TcSNP1253 112TcSNP1270 113TcSNP1275 114TcSNP1293 115TcSNP1309
116TcSNP1350 117TcSNP1383 118TcSNP1401 119TcSNP1404 120TcSNP1414
121TcSNP1439 122TcSNP1442 123TcSNP1458 124TcSNP1484 125TcSNP1520
126TcSNP1524 127TcSNP1527 128Tcm001s00947643 129Tcm003s01336581 130Tcm003s07402719
131Tcm006s26664133