SNP Profiles of PA 121 [PER]   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1._PA 121 [PER]___
______GGGGAT___GG______CCTTCCTT___
2._PA 121 [PER]___
______GGGGAA___AA______CCTTCCTT___
3._PA 121 [PER]___
______GGGGAT___GG______CCTTCCTT___
4._PA 121 [PER]___
______CGGGTT___AG______CCTTCCCC___
5._PA 121 [PER]___
______GGGGAT___GG______CCTTCCTT___
6._PA 121 [PER]___
______GG___AT___________________________
7._PA 121 [PER]___
______GG___AT___________________________
8._PA 121 [PER]___
______GG___AT___________________________
9._PA 121 [PER]___
______CG___TT___________________________
10._PA 121 [PER]___
______GG___AA___________________________
11._PA 121 [PER]___
__________________________________________
12._PA 121 [PER]___
TTCC_________CT___CCGG____________TT
13._PA 121 [PER]___
______GGCCAT___GG______GGAACCAA___
14._PA 121 [PER]___
______________________________TTCC______
15._PA 121 [PER]___
______GG___AT___________________________
16._PA 121 [PER]___
______GG___AT___________________________
17._PA 121 [PER]___
______GG___AT___________________________
18._PA 121 [PER]___
______GG___AT___________________________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1._PA 121 [PER]___
___ACGTCCAAGG______AA___CCAAGGCC
2._PA 121 [PER]___
___CCGTCTATGG______AA___CCAAGGCC
3._PA 121 [PER]___
___ACGTCCAAGG______AA___CCAAGGCC
4._PA 121 [PER]___
___CCTTTTAAGG______AA___CCAAGGCC
5._PA 121 [PER]___
___ACGT___AAGG______AA___CCAAGGCC
6._PA 121 [PER]___
___ACGTCC____________AA___CCAA___CC
7._PA 121 [PER]___
___ACGTCC____________AA___CCAA___CC
8._PA 121 [PER]___
___ACGT_______________AA___CCAA___CC
9._PA 121 [PER]___
___CCTTTT____________AA___CCAA___CC
10._PA 121 [PER]___
___CCGTCT____________AA___CCAA___CC
11._PA 121 [PER]___
___AC___CC___GG______AA___GGAA______
12._PA 121 [PER]___
AAAC____________CCGG___GG___AA______
13._PA 121 [PER]___
___ACACGGTTGG______AA___GGAAGGGG
14._PA 121 [PER]___
___ACGTCC___GG______AA___CCAA___CC
15._PA 121 [PER]___
___ACGTCC____________AA___CCAA___CC
16._PA 121 [PER]___
___ACGTCC____________AA___CCAA___CC
17._PA 121 [PER]___
___ACGTCC____________AA___CCAA___CC
18._PA 121 [PER]___
___ACGTCC____________AA______AA___CC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1._PA 121 [PER]___
______AAGG___GGAACTAG___GGATCCAG
2._PA 121 [PER]___
______TTGG___GGTTCCAA___AGAACCAA
3._PA 121 [PER]___
______AAGG___GGAACTAG___GGATCCAG
4._PA 121 [PER]___
______AAGG___GGAACTGG___AGAACCAG
5._PA 121 [PER]___
______AAGG___GGAACTAG___GGATCCAG
6._PA 121 [PER]___
__________________AA_________GG______AG
7._PA 121 [PER]___
__________________AA_________GG______AG
8._PA 121 [PER]___
__________________AA_________GG______AG
9._PA 121 [PER]___
__________________AA_________AG______AG
10._PA 121 [PER]___
__________________TT_________AG______AA
11._PA 121 [PER]___
_______________GGAACT____________CC___
12._PA 121 [PER]___
TTAA___GGAA____________CT____________
13._PA 121 [PER]___
______TTGG___GGAAAGAG___GGATGG___
14._PA 121 [PER]___
_________GG___GGAA_______________CCAG
15._PA 121 [PER]___
__________________AA_________GG______AG
16._PA 121 [PER]___
__________________AA_________GG______AG
17._PA 121 [PER]___
__________________AA_________GG______AG
18._PA 121 [PER]___
__________________AA_________GG______AG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1._PA 121 [PER]___
___CC___AACT___AAGGAGCG___CCTTAA
2._PA 121 [PER]___
___AA___CCCT___AGGTGGGG___CCCTAA
3._PA 121 [PER]___
___CC___AACT___AAGGAGCG___CCTTAA
4._PA 121 [PER]___
___CC___CCTT___GGGTAACC___CCTTAA
5._PA 121 [PER]___
___CC___AACT___AAGGAGCG___CCTTAA
6._PA 121 [PER]___
_________AACT______GG___CG___CC______
7._PA 121 [PER]___
_________AACT______GG___CG___CC______
8._PA 121 [PER]___
_________AACT______GG___CG___CC______
9._PA 121 [PER]___
_________CCTT______GT___CC___CC______
10._PA 121 [PER]___
_________CCCT______GT___GG___CC______
11._PA 121 [PER]___
___________________________CG___CCTTAA
12._PA 121 [PER]___
AA___CCAA___AG_________CGAACCTT___
13._PA 121 [PER]___
___CC___AA______AACCAGCG___CCAA___
14._PA 121 [PER]___
_________AACT______GG___CG___CCTT___
15._PA 121 [PER]___
_________AACT______GG___CG___CC______
16._PA 121 [PER]___
_________AACT______GG___CG___CC______
17._PA 121 [PER]___
_________AACT______GG___CG___CC______
18._PA 121 [PER]___
_________AACT______GG___CG___CC______
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1._PA 121 [PER]___
TT_________AAAA___AACCCCGGAG___TT
2._PA 121 [PER]___
CC_________AAAA___GGTTTTGTAG___TT
3._PA 121 [PER]___
TT_________AAAA___AACCCCGGAG___TT
4._PA 121 [PER]___
TT_________AAAA___AACTCCGGAG___TT
5._PA 121 [PER]___
TT_________AAAA___AACCCCGGAG___TT
6._PA 121 [PER]___
TT_________AA_______________GG_________
7._PA 121 [PER]___
TT_________AA_______________GG_________
8._PA 121 [PER]___
TT_________AA_______________GG_________
9._PA 121 [PER]___
TT_________AA_______________GG_________
10._PA 121 [PER]___
CC_________AA_______________GT_________
11._PA 121 [PER]___
_______________________________________TT
12._PA 121 [PER]___
___CCGGCCAA___CC______CCGGAGCT___
13._PA 121 [PER]___
AA____________AA___AA______CCAG___AA
14._PA 121 [PER]___
TT________________________CCGGAG______
15._PA 121 [PER]___
TT_________AA_______________GG_________
16._PA 121 [PER]___
TT_________AA_______________GG_________
17._PA 121 [PER]___
TT_________AA_______________GG_________
18._PA 121 [PER]___
TT_________AA_______________GG_________
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1._PA 121 [PER]___
GGTT___AA___CG___GGCCCCCCGGTTCG
2._PA 121 [PER]___
TTTT___CC___CGAAGGGGTTGGAGCTGG
3._PA 121 [PER]___
GGTT___AA___CG___GGCCCCCCGGTTCG
4._PA 121 [PER]___
___TT___AA___CGAAGGCGCCCGAACTGG
5._PA 121 [PER]___
GGTT___AA___CG___GGCCCCCCGGTTCG
6._PA 121 [PER]___
_____________________GG___CC______TTCG
7._PA 121 [PER]___
_____________________GG___CC______TTCG
8._PA 121 [PER]___
_____________________GG___CC______TTCG
9._PA 121 [PER]___
_____________________GG___CC______CTGG
10._PA 121 [PER]___
_____________________GG___TT______CTGG
11._PA 121 [PER]___
__________________GGCCGGCC____________
12._PA 121 [PER]___
______TTAAAATT___GG_________GG______
13._PA 121 [PER]___
CCAA___AA___CGGGCC___GGGGGGAACG
14._PA 121 [PER]___
___TT___AA_________GGCCCC____________
15._PA 121 [PER]___
_____________________GG___CC______TTCG
16._PA 121 [PER]___
_____________________GG___CC______TTCG
17._PA 121 [PER]___
_____________________GG___CC______TTCG
18._PA 121 [PER]___
_____________________GG___CC______TTCG
 85 86 87 88 89 90 91 92 93 94 95 96 97 98
1._PA 121 [PER]___
CCAATTAGCC______TTCC___CCGGGGAA
2._PA 121 [PER]___
CTAACTAGCT______TTCC___CCAGTTTT
3._PA 121 [PER]___
CCAATTAGCC______TTCC___CCGGGGAA
4._PA 121 [PER]___
CCAATTAGTT______TTCC___CCAGGGAT
5._PA 121 [PER]___
CCAATTAGCC______TTCC___CCGGGGAA
6._PA 121 [PER]___
___AATTAG__________________CCGG___AA
7._PA 121 [PER]___
___AATTAG__________________CCGG___AA
8._PA 121 [PER]___
___AATTAG__________________CCGG___AA
9._PA 121 [PER]___
___AATTAG__________________CCAG___AT
10._PA 121 [PER]___
___AACTAG__________________CCAG___TT
11._PA 121 [PER]___
______TT_______________CC___CC_________
12._PA 121 [PER]___
_________AGCCTTAA______CC___GG______
13._PA 121 [PER]___
GGAAAAAG_________AA______GGGGCCAA
14._PA 121 [PER]___
_________AGCC_______________CC___GG___
15._PA 121 [PER]___
___AATTAG__________________CCGG___AA
16._PA 121 [PER]___
___AATTAG__________________CCGG___AA
17._PA 121 [PER]___
___AATTAG__________________CCGG___AA
18._PA 121 [PER]___
___AATTAG__________________CCGG___AA
 99 100 101 102 103 104 105 106 107 108 109 110 111 112
1._PA 121 [PER]___
CCGG___TTCCTTCTCCGT______CCTTTT
2._PA 121 [PER]___
TTAG___ATCCCCTTTTTT______ACGTCC
3._PA 121 [PER]___
CCGG___TTCCTTCTCCGT______CCTTTT
4._PA 121 [PER]___
CCAA___TTCTCCTTCCGG______ACTTCT
5._PA 121 [PER]___
CCGG___TTCCTTCTCCGT______CCTTTT
6._PA 121 [PER]___
____________CC______CC____________TTTT
7._PA 121 [PER]___
____________CC______CC____________TTTT
8._PA 121 [PER]___
____________CC______CC____________TTTT
9._PA 121 [PER]___
____________CT______CC____________TTCT
10._PA 121 [PER]___
____________CC______TT____________GTCC
11._PA 121 [PER]___
___GG___TT______________________________
12._PA 121 [PER]___
______CT___CC____________GGAA___TT___
13._PA 121 [PER]___
GGGG_________AAAG___AC_________AAAA
14._PA 121 [PER]___
___GG___TT________________________TT___
15._PA 121 [PER]___
____________CC______CC____________TTTT
16._PA 121 [PER]___
____________CC______CC____________TTTT
17._PA 121 [PER]___
____________CC______CC____________TTTT
18._PA 121 [PER]___
_____________________CC____________TTTT
 113 114 115 116 117 118 119 120 121 122 123 124 125 126
1._PA 121 [PER]___
_________ACGG______TTCTCTGGGGCT___
2._PA 121 [PER]___
______TT___GG______TTTTCTCGGGCC___
3._PA 121 [PER]___
_________ACGG______TTCTCTGGGGCT___
4._PA 121 [PER]___
______TTAAGG______CTTTCTCGAGCT___
5._PA 121 [PER]___
_________ACGG______TTCTCTGGGGCT___
6._PA 121 [PER]___
_________AC_________TT___CTGGGGCT___
7._PA 121 [PER]___
_________AC_________TT___CTGGGGCT___
8._PA 121 [PER]___
_________AC_________TT___CTGGGGCT___
9._PA 121 [PER]___
_________AA_________CT___CTCGAGCT___
10._PA 121 [PER]___
_____________________TT___CTCGGGCC___
11._PA 121 [PER]___
________________________CT___CC_________
12._PA 121 [PER]___
GGTT_________GGGG_________GG______CT
13._PA 121 [PER]___
______GGACGG______AAAGAGCCGGAG___
14._PA 121 [PER]___
______CC_______________CTCTGGGG______
15._PA 121 [PER]___
_________AC_________TT___CTGGGGCT___
16._PA 121 [PER]___
_________AC_________TT___CTGGGGCT___
17._PA 121 [PER]___
_________AC_________TT___CTGGGGCT___
18._PA 121 [PER]___
_________AC_________TT___CTGGGGCT___
 127 128 129 130 131 132         
1._PA 121 [PER]___
___CCAGCCAAACX_XX_XX_XX_XX_XX_XX_XX_X
2._PA 121 [PER]___
___CCAACCAGCCX_XX_XX_XX_XX_XX_XX_XX_X
3._PA 121 [PER]___
___CCAGCCAAACX_XX_XX_XX_XX_XX_XX_XX_X
4._PA 121 [PER]___
___ACAAACAGAAX_XX_XX_XX_XX_XX_XX_XX_X
5._PA 121 [PER]___
___CCAGCCAAACX_XX_XX_XX_XX_XX_XX_XX_X
6._PA 121 [PER]___
__________________X_XX_XX_XX_XX_XX_XX_XX_X
7._PA 121 [PER]___
__________________X_XX_XX_XX_XX_XX_XX_XX_X
8._PA 121 [PER]___
__________________X_XX_XX_XX_XX_XX_XX_XX_X
9._PA 121 [PER]___
__________________X_XX_XX_XX_XX_XX_XX_XX_X
10._PA 121 [PER]___
__________________X_XX_XX_XX_XX_XX_XX_XX_X
11._PA 121 [PER]___
__________________X_XX_XX_XX_XX_XX_XX_XX_X
12._PA 121 [PER]___
AT_______________X_XX_XX_XX_XX_XX_XX_XX_X
13._PA 121 [PER]___
___CC___CCAAACX_XX_XX_XX_XX_XX_XX_XX_X
14._PA 121 [PER]___
__________________X_XX_XX_XX_XX_XX_XX_XX_X
15._PA 121 [PER]___
__________________X_XX_XX_XX_XX_XX_XX_XX_X
16._PA 121 [PER]___
__________________X_XX_XX_XX_XX_XX_XX_XX_X
17._PA 121 [PER]___
__________________X_XX_XX_XX_XX_XX_XX_XX_X
18._PA 121 [PER]___
__________________X_XX_XX_XX_XX_XX_XX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._PA_121_[PER] GC-05-011-1-11

Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._PA_121_[PER] GC-05-011-1-11

Location: Tree: 2
Notes: 2 > FP4
 Mars, 2018

3._PA_121_[PER] GC-05-011-1-11

Location: Tree: 3
Notes: 3
 Mars, 2018

4._PA_121_[PER] GC-05-011-1-11

Location: Tree: 4
Notes: 4
 Mars, 2018

5._PA_121_[PER] GC-05-011-1-11

Location: Tree: 5
Notes: 5 > FP3
 Mars, 2018

6._PA_121_[PER]

Location: 5111 3
 Dapeng Zhang, 2016

7._PA_121_[PER]

Location: 5111 1 > FP
 Dapeng Zhang, 2016

8._PA_121_[PER]

Location: 5111 5 > FP
 Dapeng Zhang, 2016

9._PA_121_[PER]

Location: 5111 4
 Dapeng Zhang, 2016

10._PA_121_[PER]

Location: 5111 2 > FP
 Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

11._PA_121_[PER] RUQ 1059

 Jocelyn De Wever et al., 2019

12._PA_121_[PER] RUQ 1059

 Lambert Motilal, 2023
Population Assignment: 

13._PA_121_[PER] RUQ 1059

Notes: Reading_Collection
 Mars, 2018

14._PA_121_[PER] RUQ 1059

 Dapeng Zhang, 2014

15._PA_121_[PER] RUQ 1059

 Dapeng Zhang, 2016

Cocoa Research Institute of Ghana (CRIG) Ghana

16._PA_121_[PER]

Location: P60 102
 Dapeng Zhang, 2016

Malaysian Cocoa Board (MCB) Malaysia

17._PA_121_[PER]

Location: C0233
 Dapeng Zhang, 2016

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

18._PA_121_[PER]

Location: Marper D393
 Dapeng Zhang, 2016

  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP25 4TcSNP28 5TcSNP32
6TcSNP33 7TcSNP42 8TcSNP49 9TcSNP52 10TcSNP60
11TcSNP75 12TcSNP90 13TcSNP122 14TcSNP131 15TcSNP143
16TcSNP144 17TcSNP150 18TcSNP151 19TcSNP154 20TcSNP174
21TcSNP176 22TcSNP189 23TcSNP193 24TcSNP194 25TcSNP226
26TcSNP230 27TcSNP240 28TcSNP242 29TcSNP290 30TcSNP305
31TcSNP316 32TcSNP329 33TcSNP363 34TcSNP364 35TcSNP372
36TcSNP413 37TcSNP418 38TcSNP421 39TcSNP429 40TcSNP430
41TcSNP448 42TcSNP469 43TcSNP519 44TcSNP521 45TcSNP522
46TcSNP529 47TcSNP534 48TcSNP546 49TcSNP547 50TcSNP560
51TcSNP561 52TcSNP577 53TcSNP589 54TcSNP591 55TcSNP602
56TcSNP606 57TcSNP619 58TcSNP640 59TcSNP642 60TcSNP644
61TcSNP645 62TcSNP653 63TcSNP660 64TcSNP689 65TcSNP701
66TcSNP702 67TcSNP723 68TcSNP731 69TcSNP739 70TcSNP751
71TcSNP776 72TcSNP799 73TcSNP800 74TcSNP823 75TcSNP835
76TcSNP836 77TcSNP860 78TcSNP872 79TcSNP878 80TcSNP891
81TcSNP894 82TcSNP899 83TcSNP917 84TcSNP929 85TcSNP944
86TcSNP953 87TcSNP994 88TcSNP998 89TcSNP999 90TcSNP1010
91TcSNP1019 92TcSNP1034 93TcSNP1041 94TcSNP1053 95TcSNP1060
96TcSNP1062 97TcSNP1063 98TcSNP1075 99TcSNP1096 100TcSNP1111
101TcSNP1112 102TcSNP1126 103TcSNP1144 104TcSNP1149 105TcSNP1156
106TcSNP1165 107TcSNP1175 108TcSNP1205 109TcSNP1230 110TcSNP1242
111TcSNP1253 112TcSNP1270 113TcSNP1275 114TcSNP1293 115TcSNP1309
116TcSNP1350 117TcSNP1383 118TcSNP1401 119TcSNP1404 120TcSNP1414
121TcSNP1439 122TcSNP1442 123TcSNP1458 124TcSNP1484 125TcSNP1520
126TcSNP1524 127TcSNP1527 128Tcm001s00947643 129Tcm002s20575712 130Tcm003s01336581
131Tcm003s07402719 132Tcm006s26664133