SNP Profiles of SC 1 [COL]   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1._SC 1 [COL]___
GGGGATAGCTCTACCTACGTCTATAGAC
2._SC 1 [COL]___
GGGGATAGCTCTACCTACGTCTATAGAC
3._SC 1 [COL]___
GGGGATAGCTCTACCTACGTCTATAGAC
4._SC 1 [COL]___
GGGGATAGCTCTACCTACGTCTATAGAC
5._SC 1 [COL]___
GGGGATAGCTCTAC___ACGTCTATAGAC
6._SC 1 [COL]___
GGGGATAGCTCTACCTACGTCTATAGAC
7._SC 1 [COL]___
GG___AT_______________ACGTCT______AC
8._SC 1 [COL]___
GG___AT_______________ACGTCT______AC
9._SC 1 [COL]___
GG___AT_______________ACGTCT______AC
10._SC 1 [COL]___
GG___AT_______________ACGTCT______AC
11._SC 1 [COL]___
GG___AT_______________ACGTCT______AC
12._SC 1 [COL]___
GG___AT_______________ACGTCT______AC
13._SC 1 [COL]___
GG___AT_______________ACGTCT______AC
14._SC 1 [COL]___
GG___AT_______________ACGTCT______AC
15._SC 1 [COL]___
GG___AT_______________ACGTCT______AC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1._SC 1 [COL]___
CGAGGGCTATAGAGATCTAGGGATCGAG
2._SC 1 [COL]___
CGAGGGCTATAGAGATCTAGGGATCGAG
3._SC 1 [COL]___
CGAGGGCTATAGAGATCTAGGGATCGAG
4._SC 1 [COL]___
CGAGGGCTATAGAGATCTAGGGATCGAG
5._SC 1 [COL]___
CGAGGGCTATAGAGATCTAGGGATCGAG
6._SC 1 [COL]___
CGAGGGCTATAGAGATCTAGGGATCGAG
7._SC 1 [COL]___
CGAG___CT_________AT______GG______AG
8._SC 1 [COL]___
CGAG___CT_________AT______GG______AG
9._SC 1 [COL]___
CGAG___CT_________AT______GG______AG
10._SC 1 [COL]___
CGAG___CT_________AT______GG______AG
11._SC 1 [COL]___
CGAG___CT_________AT______GG______AG
12._SC 1 [COL]___
CGAG___CT_________AT______GG______AG
13._SC 1 [COL]___
CGAG___CT_________AT______GG______AG
14._SC 1 [COL]___
CGAG___CT_________AT______GG______AG
15._SC 1 [COL]___
CGAG___CT_________AT______GG______AG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1._SC 1 [COL]___
CCCCCTGGGTAACGCCCTAGCTGGAGAG
2._SC 1 [COL]___
CCCCCTGGGTAACGCCCTAGCTGGAGAG
3._SC 1 [COL]___
CCCCCTGGGTAACGCCCTAGCTGGAGAG
4._SC 1 [COL]___
CCCCCTGGGTAACGCCCTAGCTGGAGAG
5._SC 1 [COL]___
CCCCCTGGGTAACGCCCTAGCTGGAGAG
6._SC 1 [COL]___
CCCCCTGGGTAACGCCCTAGCTGGAGAG
7._SC 1 [COL]___
___CCCT___GT___CGCC______CTGG______
8._SC 1 [COL]___
___CCCT___GT___CGCC______CTGG______
9._SC 1 [COL]___
___CCCT___GT___CGCC______CTGG______
10._SC 1 [COL]___
___CCCT___GT___CGCC______CTGG______
11._SC 1 [COL]___
___CCCT___GT___CGCC______CTGG______
12._SC 1 [COL]___
___CCCT___GT___CGCC______CTGG______
13._SC 1 [COL]___
___CCCT___GT___CGCC______CTAG______
14._SC 1 [COL]___
___CCCT___GT___CGCC______CTAG______
15._SC 1 [COL]___
___CCCT___GT___CGCC______CTAG______
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1._SC 1 [COL]___
CTCTGTAGGTGTGTCCGGAAGGCGCCCC
2._SC 1 [COL]___
CTCTGTAGGTGTGTCCGGAAGGCGCCCC
3._SC 1 [COL]___
CTCTGTAGGTGTGTCCGGAAGGCGCCCC
4._SC 1 [COL]___
CTCTGTAGGTGTGTCCGGAAGGCGCCCC
5._SC 1 [COL]___
CTCTGTAGGTGTGTCCGGAAGGCGCCCC
6._SC 1 [COL]___
CTCTGTAGGTGTGTCCGGAAGGCGCCCC
7._SC 1 [COL]___
______GT_____________________GG___CC___
8._SC 1 [COL]___
______GT_____________________GG___CC___
9._SC 1 [COL]___
______GT_____________________GG___CC___
10._SC 1 [COL]___
______GT_____________________GG___CC___
11._SC 1 [COL]___
______GT_____________________GG___CC___
12._SC 1 [COL]___
______GT_____________________GG___CC___
13._SC 1 [COL]___
______GT_____________________GG___CC___
14._SC 1 [COL]___
______GT_____________________GG___CC___
15._SC 1 [COL]___
______GT_____________________GG___CC___
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1._SC 1 [COL]___
GGTTGGCTAACTAACTCTCCCTAAGTAA
2._SC 1 [COL]___
GGTTGGCTAACTAACTCTCCCTAAGTAA
3._SC 1 [COL]___
GGTTGGCTAACTAACTCTCCCTAAGTAA
4._SC 1 [COL]___
GGTTGGCTAACTAACTCTCCCTAAGTAA
5._SC 1 [COL]___
GGTTGGCTAACTAACTCTCCCTAAGTAA
6._SC 1 [COL]___
GGTTGGCTAACTAACTCTCCCTAAGTAA
7._SC 1 [COL]___
___TTGG___AACTAA_________CTAA___AA
8._SC 1 [COL]___
___TTGG___AACTAA_________CTAA___AA
9._SC 1 [COL]___
___TTGG___AACTAA_________CTAA___AA
10._SC 1 [COL]___
___TTGG___AACTAA_________CTAA___AA
11._SC 1 [COL]___
___TTGG___AACTAA_________CTAA___AA
12._SC 1 [COL]___
___TTGG___AACTAA_________CTAA___AA
13._SC 1 [COL]___
___TTGG___AACTAA_________CTAA___AA
14._SC 1 [COL]___
___TTGG___AACTAA_________CTAA___AA
15._SC 1 [COL]___
___TTGG___AACTAA_________CTAA___AA
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1._SC 1 [COL]___
CCAGATCTTTTTCTGTCCGTCCTTAAGG
2._SC 1 [COL]___
CCAG___CTTTTTCTGTCCGTCCTTAAGG
3._SC 1 [COL]___
CCAGATCTTT___CTGTCCGTCCTTAAGG
4._SC 1 [COL]___
CCAGATCTTTTTCTGTCCGTCCTTAAGG
5._SC 1 [COL]___
CCAGATCTTTTTCTGTCCGTCCTTAAGG
6._SC 1 [COL]___
CCAGATCTTTTTCTGTCCGTCCTTAAGG
7._SC 1 [COL]___
_________CT______CT______GTCC___AA___
8._SC 1 [COL]___
_________CT______CT______GTCC___AA___
9._SC 1 [COL]___
_________CT______CT______GTCC___AA___
10._SC 1 [COL]___
_________CT______CT______GTCC___AA___
11._SC 1 [COL]___
_________CT______CT______GTCC___AA___
12._SC 1 [COL]___
_________CT______CT______GTCC___AA___
13._SC 1 [COL]___
_________CT______CT______GTCC___AA___
14._SC 1 [COL]___
_________CT______CT______GTCC___AA___
15._SC 1 [COL]___
_________CT______CT______GTCC___AA___
 85 86 87 88 89 90 91 92 93 94 95    
1._SC 1 [COL]___
TTCTCTCGAGCTACAGACAGAAX_XX_XX_X
2._SC 1 [COL]___
TTCTCTCGAGCTACAGACAGAAX_XX_XX_X
3._SC 1 [COL]___
TTCTCTCGAGCTACAGACAGAAX_XX_XX_X
4._SC 1 [COL]___
TTCTCTCGAGCTACAGACAGAAX_XX_XX_X
5._SC 1 [COL]___
TTCTCTCGAGCTACAGACAGAAX_XX_XX_X
6._SC 1 [COL]___
TT___CTCGAGCTACAGACAGAAX_XX_XX_X
7._SC 1 [COL]___
TT___CTCGAGCT_______________X_XX_XX_X
8._SC 1 [COL]___
TT___CTCGAGCT_______________X_XX_XX_X
9._SC 1 [COL]___
TT___CTCGAGCT_______________X_XX_XX_X
10._SC 1 [COL]___
TT___CTCGAGCT_______________X_XX_XX_X
11._SC 1 [COL]___
TT___CTCGAGCT_______________X_XX_XX_X
12._SC 1 [COL]___
TT___CTCGAGCT_______________X_XX_XX_X
13._SC 1 [COL]___
TT___CT___AGCT_______________X_XX_XX_X
14._SC 1 [COL]___
TT___CTGGAGCT_______________X_XX_XX_X
15._SC 1 [COL]___
TT___CTGGAGCT_______________X_XX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._SC_1_[COL] GC-01-119-6-16

Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

2._SC_1_[COL] GC-01-119-6-16

Location: Tree: 4
Notes: 4
 Mars, 2018

3._SC_1_[COL] GC-01-119-6-16

Location: Tree: 5
Notes: 5
 Mars, 2018

4._SC_1_[COL] GC-01-119-6-16

Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

5._SC_1_[COL] GC-01-119-6-16

Location: Tree: 12
Notes: 12
 Mars, 2018

6._SC_1_[COL] GC-01-119-6-16

Location: Tree: 13
Notes: 13
 Mars, 2018

7._SC_1_[COL]

Location: 1616 4
 Dapeng Zhang, 2016

8._SC_1_[COL]

Location: 1616 5
 Dapeng Zhang, 2016

9._SC_1_[COL]

Location: 1616 12
 Dapeng Zhang, 2016

10._SC_1_[COL]

Location: 1616 13
 Dapeng Zhang, 2016

11._SC_1_[COL]

Location: 1616 2 > FP
 Dapeng Zhang, 2016

12._SC_1_[COL]

Location: 1616 9 > FP
 Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

13._SC_1_[COL] RUQ 41

 Dapeng Zhang, 2016

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

14._SC_1_[COL]

Location: 4A C274 T1
 Dapeng Zhang, 2016

15._SC_1_[COL]

Location: 4A C319 T2
 Dapeng Zhang, 2016

  Key to SNP Markers

1TcSNP25 2TcSNP28 3TcSNP32 4TcSNP42 5TcSNP60
6TcSNP75 7TcSNP90 8TcSNP122 9TcSNP144 10TcSNP150
11TcSNP151 12TcSNP154 13TcSNP174 14TcSNP193 15TcSNP226
16TcSNP230 17TcSNP240 18TcSNP242 19TcSNP316 20TcSNP329
21TcSNP364 22TcSNP372 23TcSNP413 24TcSNP418 25TcSNP429
26TcSNP430 27TcSNP448 28TcSNP469 29TcSNP521 30TcSNP529
31TcSNP534 32TcSNP547 33TcSNP560 34TcSNP561 35TcSNP577
36TcSNP591 37TcSNP602 38TcSNP606 39TcSNP619 40TcSNP645
41TcSNP653 42TcSNP689 43TcSNP701 44TcSNP702 45TcSNP723
46TcSNP731 47TcSNP751 48TcSNP776 49TcSNP799 50TcSNP823
51TcSNP836 52TcSNP860 53TcSNP872 54TcSNP878 55TcSNP891
56TcSNP894 57TcSNP899 58TcSNP917 59TcSNP929 60TcSNP944
61TcSNP953 62TcSNP994 63TcSNP998 64TcSNP999 65TcSNP1034
66TcSNP1041 67TcSNP1060 68TcSNP1062 69TcSNP1063 70TcSNP1075
71TcSNP1096 72TcSNP1111 73TcSNP1126 74TcSNP1144 75TcSNP1149
76TcSNP1156 77TcSNP1165 78TcSNP1175 79TcSNP1242 80TcSNP1253
81TcSNP1270 82TcSNP1309 83TcSNP1350 84TcSNP1383 85TcSNP1414
86TcSNP1439 87TcSNP1442 88TcSNP1458 89TcSNP1484 90TcSNP1520
91Tcm001s00947643 92Tcm002s20575712 93Tcm003s01336581 94Tcm003s07402719 95Tcm006s26664133