SNP Profiles of SCA 9 View Data

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
1._SCA 9___	___	___	___	___	___	___	___	___	___	___	___	___	___	___
2._SCA 9___	___	___	___	___	___	___	___	___	___	___	___	___	___	___
3._SCA 9___	CT	CC	___	___	___	TT	___	CC	GG	___	___	___	___	GG
4._SCA 9___	___	___	GG	CC	AT	___	GG	___	___	GG	AA	CC	AA	___
5._SCA 9___	___	___	___	___	___	___	___	___	___	___	TT	CC	___	___

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
1._SCA 9___	___	CC	___	CT	___	___	___	___	___	___	GG	AG	___	___
2._SCA 9___	___	AC	___	CC	___	GG	___	___	AA	___	CG	AG	___	___
3._SCA 9___	AT	AC	___	___	___	___	TT	AG	___	GG	___	AG	___	___
4._SCA 9___	___	AC	CC	GG	AT	GG	___	___	AA	___	CG	AG	GG	AG
5._SCA 9___	___	AC	GG	CC	___	GG	___	___	AA	___	CG	AG	___	CT

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
1._SCA 9___	___	___	___	___	___	AG	AA	CC	___	___	___	___	CC	___
2._SCA 9___	___	___	___	___	___	GG	AT	CT	___	___	___	___	CC	___
3._SCA 9___	CT	AA	___	GG	AA	___	___	___	___	CC	___	___	___	___
4._SCA 9___	___	___	TT	GG	___	GG	AT	AG	GG	___	GG	AA	GG	___
5._SCA 9___	___	___	___	GG	___	GG	AT	___	___	___	___	___	CC	AA

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
1._SCA 9___	___	___	___	___	___	___	___	___	___	___	CG	___	CC	CT
2._SCA 9___	___	___	___	___	___	___	___	___	___	___	GG	___	AA	CC
3._SCA 9___	___	AC	___	CC	CC	___	AA	___	___	___	GG	AT	AA	CC
4._SCA 9___	AA	___	AA	___	CC	___	___	AA	CC	GG	GG	___	AA	GG
5._SCA 9___	___	___	___	___	CC	CC	___	___	GG	___	GG	___	AA	CC

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
1._SCA 9___	GG	___	___	___	___	___	___	___	___	___	___	___	___	TT
2._SCA 9___	AA	___	___	___	___	___	___	___	___	___	___	___	___	TT
3._SCA 9___	___	___	TT	AG	CC	AA	___	CC	___	TT	GG	GG	CT	___
4._SCA 9___	___	AG	___	___	___	___	AA	___	AA	___	CC	GG	___	AA
5._SCA 9___	___	CT	___	___	___	___	___	___	___	TT	GG	GG	___	___

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
1._SCA 9___	___	___	___	___	___	___	AA	GG	CG	CT	___	___	___	___
2._SCA 9___	___	___	___	___	___	___	GG	GG	GG	CT	___	___	___	___
3._SCA 9___	___	___	TT	AC	TT	TT	___	CC	___	___	___	GG	___	___
4._SCA 9___	AC	AA	___	AC	___	CC	GG	GG	___	AG	GG	GG	AG	GG
5._SCA 9___	___	TT	___	AC	___	___	___	CC	CC	TT	___	___	___	___

	85	86	87	88	89	90	91	92	93	94	95	96	97	98
1._SCA 9___	___	___	___	CT	___	___	___	___	___	CC	___	CT	___	___
2._SCA 9___	___	___	___	CT	___	___	___	___	___	CG	___	CC	___	___
3._SCA 9___	___	CC	___	___	AG	CC	CC	AA	___	___	CC	___	AG	___
4._SCA 9___	GG	___	AA	AG	AG	___	___	___	AA	___	___	GG	AG	CC
5._SCA 9___	___	___	___	___	AG	CC	___	___	___	___	___	CC	___	GG

	99	100	101	102	103	104	105	106	107	108	109	110	111	112
1._SCA 9___	___	___	AG	___	AT	___	___	___	___	___	___	___	___	___
2._SCA 9___	___	___	GG	___	TT	___	___	___	___	___	___	___	___	___
3._SCA 9___	___	___	___	TT	___	CC	___	___	___	GG	AA	TT	___	GG
4._SCA 9___	AA	GG	GG	___	___	___	AA	AA	AC	___	___	AA	AA	___
5._SCA 9___	___	___	GG	___	TT	___	___	___	___	___	___	TT	___	___

	113	114	115	116	117	118	119	120	121	122	123	124	125	126
1._SCA 9___	___	___	___	___	___	___	CT	___	GG	___	___	___	___	___
2._SCA 9___	___	___	___	___	___	___	CC	___	GG	___	___	___	___	___
3._SCA 9___	AT	___	___	AG	GG	___	___	___	CC	___	___	TT	AA	___
4._SCA 9___	___	AG	GG	___	___	AA	GG	AA	GG	AA	GG	___	___	CC
5._SCA 9___	___	CT	___	___	___	___	CC	TT	CC	AA	___	___	___	___

	127	128	129
1._SCA 9___	___	___	___	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._SCA 9___	___	___	___	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._SCA 9___	___	___	___	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._SCA 9___	AC	AA	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._SCA 9___	___	___	___	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Center for Forestry Research and Technology Transfer Vietnam

1._SCA_9

Jocelyn De Wever et al., 2019

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

2._SCA_9 RUQ 1064

Jocelyn De Wever et al., 2019

3._SCA_9 RUQ 1064

Lambert Motilal, 2023

Population Assignment:

IMC
0.160 Nan
0.605 Par
0.065 Pur
0.089

4._SCA_9 RUQ 1064

Notes: Reading_Collection

5._SCA_9 RUQ 1064

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP13	2	TcSNP19	3	TcSNP25	4	TcSNP28	5	TcSNP32
6	TcSNP33	7	TcSNP42	8	TcSNP49	9	TcSNP52	10	TcSNP60
11	TcSNP75	12	TcSNP90	13	TcSNP122	14	TcSNP131	15	TcSNP143
16	TcSNP144	17	TcSNP150	18	TcSNP151	19	TcSNP154	20	TcSNP174
21	TcSNP176	22	TcSNP189	23	TcSNP193	24	TcSNP194	25	TcSNP226
26	TcSNP230	27	TcSNP240	28	TcSNP242	29	TcSNP290	30	TcSNP305
31	TcSNP316	32	TcSNP329	33	TcSNP363	34	TcSNP364	35	TcSNP372
36	TcSNP413	37	TcSNP418	38	TcSNP421	39	TcSNP429	40	TcSNP430
41	TcSNP448	42	TcSNP469	43	TcSNP497	44	TcSNP519	45	TcSNP521
46	TcSNP522	47	TcSNP529	48	TcSNP534	49	TcSNP546	50	TcSNP547
51	TcSNP560	52	TcSNP561	53	TcSNP577	54	TcSNP589	55	TcSNP591
56	TcSNP602	57	TcSNP606	58	TcSNP619	59	TcSNP640	60	TcSNP642
61	TcSNP644	62	TcSNP645	63	TcSNP653	64	TcSNP660	65	TcSNP689
66	TcSNP702	67	TcSNP723	68	TcSNP731	69	TcSNP739	70	TcSNP751
71	TcSNP776	72	TcSNP799	73	TcSNP800	74	TcSNP823	75	TcSNP835
76	TcSNP836	77	TcSNP860	78	TcSNP872	79	TcSNP878	80	TcSNP891
81	TcSNP894	82	TcSNP899	83	TcSNP917	84	TcSNP929	85	TcSNP944
86	TcSNP945	87	TcSNP953	88	TcSNP994	89	TcSNP998	90	TcSNP999
91	TcSNP1010	92	TcSNP1019	93	TcSNP1034	94	TcSNP1041	95	TcSNP1053
96	TcSNP1060	97	TcSNP1062	98	TcSNP1063	99	TcSNP1075	100	TcSNP1096
101	TcSNP1111	102	TcSNP1112	103	TcSNP1126	104	TcSNP1144	105	TcSNP1149
106	TcSNP1156	107	TcSNP1175	108	TcSNP1205	109	TcSNP1230	110	TcSNP1253
111	TcSNP1270	112	TcSNP1275	113	TcSNP1293	114	TcSNP1309	115	TcSNP1383
116	TcSNP1401	117	TcSNP1404	118	TcSNP1414	119	TcSNP1439	120	TcSNP1442
121	TcSNP1458	122	TcSNP1484	123	TcSNP1520	124	TcSNP1524	125	TcSNP1527
126	Tcm001s00947643	127	Tcm003s01336581	128	Tcm003s07402719	129	Tcm006s26664133