SNP Profiles of "SLC 24"   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1. _GC-08-093-2-16
GGGGTTAGCCTTCCCTCCGGCTAAGGAC
2. _GC-08-093-2-16
GGGGATGGCTTTACCCACGTCTAAGGAA
3. _GC-08-093-2-16
GGGGATGGCTTTACCCACGTCTAAGGAA
4. _GC-08-093-2-16
GGGGATGGCTTTACCCACGTCTAAGGAA
5. _GC-08-093-2-16
GGGGATGGCTTTACCCACGTCTAAGGAA
6. _GC-08-093-2-16
GGGGATGGCTTTACCCACGTCTAAGGAA
7. _GC-08-093-2-16
GGGGATGGCTTTACCCACGTCTAAGGAA
8. _GC-08-093-2-16
GGGGATGGCTTTACCCACGTCTAAGGAA
9. _GC-08-093-2-16
GGGGATGGCTTTACCCACGTCTAAGGAA
10. _GC-08-093-2-16
GGGGATGGCTTTACCCACGTCTAAGGAA
11. _GC-08-093-2-16
GGGGATGGCTTTACCCACGTCTAAGGAA
12. _GC-08-093-2-16
GGGGATGGCTTTACCCACGT___AAGGAA
13. _GC-08-093-2-16
GGGGATGGCTTTACCCACGTCTAAGGAA
14. _8216_1_>_FP
GG___TT_______________CCGGCT______AC
15. _8216_6
GG___AT_______________ACGTCT______AA
16. _8216_7
GG___AT_______________ACGTCT______AA
17. _8216_8
GG___AT_______________ACGTCT______AA
18. _8216_9
GG___AT_______________ACGTCT______AA
19. _8216_10
GG___AT_______________ACGTCT______AA
20. _8216_12
GG___AT_______________ACGTCT______AA
21. _8216_14
GG___AT_______________ACGTCT______AA
22. _8216_16
GG___AT_______________ACGTCT______AA
23. _8216_17
GG___AT_______________ACGT_________AA
24. _8216_18
GG___AT_______________ACGTCT______AA
25. _8216_2_>_FP
GG___AT_______________ACGTCT______AA
26. _8216_5_>_FP
GG___AT_______________ACGTCT______AA
27. _Marper_D_250
GG___TT_______________CCGGCT______AC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1. _GC-08-093-2-16
CCAAGGCCATGGGGAACTAGAGAACCAG
2. _GC-08-093-2-16
CCAGGGCCATGGGGATTTAGGGAACGAA
3. _GC-08-093-2-16
CCAGGGCCATGGGGATTTAGGGAACGAA
4. _GC-08-093-2-16
CCAGGGCCATGGGGATTTAGGGAACGAA
5. _GC-08-093-2-16
CCAGGGCCATGGGGATTTAGGGAACGAA
6. _GC-08-093-2-16
CCAGGGCCATGGGGATTTAGGGAACGAA
7. _GC-08-093-2-16
CCAGGGCCATGGGGATTTAGGGAACGAA
8. _GC-08-093-2-16
CCAGGGCCATGGGGATTTAGGGAACGAA
9. _GC-08-093-2-16
CCAGGGCCATGGGGATTTAGGGAACGAA
10. _GC-08-093-2-16
CCAGGGCCATGGGGATTTAGGGAACGAA
11. _GC-08-093-2-16
CCAGGGCCATGGGGATTTAGGGAACGAA
12. _GC-08-093-2-16
CCAGGGCCATGGGGATTTAGGGAACGAA
13. _GC-08-093-2-16
CCAGGGCCATGGGGATTTAGGGAACGAA
14. _8216_1_>_FP
CCAA___CC_________AA______AG______AG
15. _8216_6
CCAG___CC_________AT______GG______AA
16. _8216_7
CCAG___CC_________AT______GG______AA
17. _8216_8
CCAG___CC_________AT______GG______AA
18. _8216_9
CCAG___CC_________AT______GG______AA
19. _8216_10
CCAG___CC_________AT______GG______AA
20. _8216_12
CCAG___CC_________AT______GG______AA
21. _8216_14
CCAG___CC_________AT______GG______AA
22. _8216_16
CCAG___CC_________AT______GG______AA
23. _8216_17
CCAG___CC_________AT______GG______AA
24. _8216_18
CCAG___CC_________AT______GG______AA
25. _8216_2_>_FP
CCAG___CC_________AT______GG______AA
26. _8216_5_>_FP
CCAG___CC_________AT______GG______AA
27. _Marper_D_250
CCAA___CC_________AA______AG______AG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1. _GC-08-093-2-16
ACACTTAGGTAGGGCCCTAACTAGAAAA
2. _GC-08-093-2-16
CCCCTTGGGTAACCCC___AACT___AAAG
3. _GC-08-093-2-16
CCCCTTGGGTAACCCCCTAACT___AAAG
4. _GC-08-093-2-16
CCCCTTGGGTAACCCCCTAACT___AAAG
5. _GC-08-093-2-16
CCCCTTGGGTAACCCCCTAACT___AAAG
6. _GC-08-093-2-16
CCCCTTGGGTAACCCCCTAACT___AAAG
7. _GC-08-093-2-16
CCCCTTGGGTAACCCCCTAACT___AAAG
8. _GC-08-093-2-16
CCCCTTGGGTAACCCCCTAACT___AAAG
9. _GC-08-093-2-16
CCCCTTGGGTAACCCCCTAACT___AAAG
10. _GC-08-093-2-16
CCCCTTGGGTAACCCCCTAACT___AAAG
11. _GC-08-093-2-16
CCCCTTGGGTAACCCCCTAACT___AAAG
12. _GC-08-093-2-16
CCCCTTGGGTAACCCCCTAACT___AAAG
13. _GC-08-093-2-16
CCCCTTGGGTAACCCCCTAACT___AAAG
14. _8216_1_>_FP
___ACTT___GT___GGCC______CTAG______
15. _8216_6
___CCTT___GT___CCCC______CT_________
16. _8216_7
___CCTT___GT___CCCC______CT_________
17. _8216_8
___CCTT___GT___CCCC______CT_________
18. _8216_9
___CCTT___GT___CCCC______CT_________
19. _8216_10
___CCTT___GT___CCCC______CT_________
20. _8216_12
___CCTT___GT___CCCC______CT_________
21. _8216_14
___CCTT___GT___CCCC______CT_________
22. _8216_16
___CCTT___GT___CCCC______CT_________
23. _8216_17
___CCTT___GT___CCCC______CT_________
24. _8216_18
___CCTT___GT___CCCC______CT_________
25. _8216_2_>_FP
___CCTT___GT___CCCC______CT_________
26. _8216_5_>_FP
___CCTT___GT___CCCC______CT_________
27. _Marper_D_250
___ACTT___GT___GGCC______CTGG______
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1. _GC-08-093-2-16
CTCTGTAGTTTTTTCCCGAAGGCGCTCC
2. _GC-08-093-2-16
TTCCTTAGGTTTGTACGGAACGCGCCCC
3. _GC-08-093-2-16
TTCCTTAGGTTTGTACGGAACGCGCCCC
4. _GC-08-093-2-16
TTCCTTAGGTTTGTACGGAACGCGCCCC
5. _GC-08-093-2-16
TTCCTTAGGTTTGTACGGAACGCGCCCC
6. _GC-08-093-2-16
TTCCTTAGGTTTGTACGGAACGCGCCCC
7. _GC-08-093-2-16
TTCCTTAGGTTTGTACGGAACGCGCCCC
8. _GC-08-093-2-16
TTCCTTAGGTTTGTACGGAACGCGCCCC
9. _GC-08-093-2-16
TTCCTTAGGTTTGTACGGAACGCGCCCC
10. _GC-08-093-2-16
TTCCTTAGGTTTGTACGGAACGCGCCCC
11. _GC-08-093-2-16
TTCCTTAGGTTTGTACGGAACGCGCCCC
12. _GC-08-093-2-16
TTCCTTAGGTTTGTACGGAACGCGCCCC
13. _GC-08-093-2-16
TTCCTTAGGTTTGTACGGAACGCGCCCC
14. _8216_1_>_FP
______GT_____________________GG___CT___
15. _8216_6
______TT_____________________CG___CC___
16. _8216_7
______TT_____________________CG___CC___
17. _8216_8
______TT_____________________CG___CC___
18. _8216_9
______TT_____________________CG___CC___
19. _8216_10
______TT_____________________CG___CC___
20. _8216_12
______TT_____________________CG___CC___
21. _8216_14
______TT_____________________CG___CC___
22. _8216_16
______TT_____________________CG___CC___
23. _8216_17
______TT_____________________CG___CC___
24. _8216_18
______TT_____________________CG___CC___
25. _8216_2_>_FP
______TT_____________________CG___CC___
26. _8216_5_>_FP
______TT_____________________CG___CC___
27. _Marper_D_250
______GT_____________________GG___CT___
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1. _GC-08-093-2-16
AGCTGGCCTTTTAACTTTCCCCAGGGAT
2. _GC-08-093-2-16
GGTTGGCTAATTAGTTCTCCCTAAGTAA
3. _GC-08-093-2-16
GGTTGGCTAATTAGTTCTCCCTAAGTAA
4. _GC-08-093-2-16
GGTTGGCTAATTAGTTCTCCCTAAGTAA
5. _GC-08-093-2-16
GGTTGGCTAATTAGTTCTCCCTAAGTAA
6. _GC-08-093-2-16
GGTTGGCTAATTAGTTCTCCCTAAGTAA
7. _GC-08-093-2-16
GGTTGGCTAATTAGTTCTCCCTAAGTAA
8. _GC-08-093-2-16
GGTTGGCTAATTAGTTCTCCCTAAGTAA
9. _GC-08-093-2-16
GGTTGGCTAATTAGTTCTCCCTAAGTAA
10. _GC-08-093-2-16
GGTTGGCTAATTAGTTCTCCCTAAGTAA
11. _GC-08-093-2-16
GG___GGCTAATTAGTTCTCCCTAAGTAA
12. _GC-08-093-2-16
GGTTGGCTAATTAGTTCTCCCTAAGTAA
13. _GC-08-093-2-16
GGTTGGCTAATTAGTTCTCCCTAAGTAA
14. _8216_1_>_FP
___CTGG___TTTTAA_________CCAG___AT
15. _8216_6
___TTGG___AATTAG_________CTAA___AA
16. _8216_7
___TTGG___AATTAG_________CTAA___AA
17. _8216_8
___TTGG___AATTAG_________CTAA___AA
18. _8216_9
___TTGG___AATTAG_________CTAA___AA
19. _8216_10
___TTGG___AATTAG_________CTAA___AA
20. _8216_12
___TTGG___AATTAG_________CTAA___AA
21. _8216_14
___TTGG___AATTAG_________CTAA___AA
22. _8216_16
______GG___AATTAG_________CTAA___AA
23. _8216_17
___TTGG___AATTAG_________CTAA___AA
24. _8216_18
___TTGG___AATTAG_________CTAA___AA
25. _8216_2_>_FP
___TTGG___AATTAG_________CTAA___AA
26. _8216_5_>_FP
___TTGG___AATTAG_________CTAA___AA
27. _Marper_D_250
___CTGG___TTTTAA_________CCAG___AT
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1. _GC-08-093-2-16
CTGGTTCTCTTTCCGGAATTCTTTAAGG
2. _GC-08-093-2-16
CCAGATTTTTTTCTGGCCGTCC___AAGG
3. _GC-08-093-2-16
CCAGATTTTTTTCTGGCCGTCC___AAGG
4. _GC-08-093-2-16
CCAGATTTTTTTCTGGCCGTCC___AAGG
5. _GC-08-093-2-16
CCAGATTTTTTTCTGGCCGTCCTTAAGG
6. _GC-08-093-2-16
CCAGATTTTTTTCTGGCCGTCCTTAAGG
7. _GC-08-093-2-16
CCAGATTTTTTTCTGGCCGTCC___AAGG
8. _GC-08-093-2-16
CCAGATTTTTTTCTGGCCGTCCTTAAGG
9. _GC-08-093-2-16
CCAGATTTTTTTCTGGCCGTCC___AAGG
10. _GC-08-093-2-16
CCAGATTTTTTTCTGGCCGTCC___AAGG
11. _GC-08-093-2-16
CCAGATTTTTTTCTGGCCGTCC___AAGG
12. _GC-08-093-2-16
CCAGATTTTTTTCTGGCCGTCC___AAGG
13. _GC-08-093-2-16
CCAGATTTTTTTCTGGCCGTCC___AAGG
14. _8216_1_>_FP
_________CT______CC______TTCT___AA___
15. _8216_6
_________TT______CT______GTCC___AA___
16. _8216_7
_________TT______CT______GTCC___AA___
17. _8216_8
_________TT______CT______GTCC___AA___
18. _8216_9
_________TT______CT______GTCC___AA___
19. _8216_10
_________TT______CT______GTCC___AA___
20. _8216_12
_________TT______CT______GTCC___AA___
21. _8216_14
_________TT______CT______GTCC___AA___
22. _8216_16
_________TT______CT______GTCC___AA___
23. _8216_17
_________TT______CT______GTCC___AA___
24. _8216_18
_________TT______CT______GTCC___AA___
25. _8216_2_>_FP
_________TT______CT______GTCC___AA___
26. _8216_5_>_FP
_________TT______CT______GTCC___AA___
27. _Marper_D_250
_________CT______CC______TTCT___AC___
 85 86 87 88 89 90 91 92 93 94 95    
1. _GC-08-093-2-16
TTCTCCGGAGCTACAAACAGAAX_XX_XX_X
2. _GC-08-093-2-16
TTTTCTGGAATTCCAGACAGAAX_XX_XX_X
3. _GC-08-093-2-16
TTTTCTGGAATTCCAGACAGAAX_XX_XX_X
4. _GC-08-093-2-16
TTTTCTGGAATTCCAGACAGAAX_XX_XX_X
5. _GC-08-093-2-16
TTTTCTGGAATTCCAGACAGAAX_XX_XX_X
6. _GC-08-093-2-16
TTTTCTGGAATTCC___ACAGAAX_XX_XX_X
7. _GC-08-093-2-16
TTTTCTGGAATTCCAGACAGAAX_XX_XX_X
8. _GC-08-093-2-16
TTTTCTGGAATTCCAGACAGAAX_XX_XX_X
9. _GC-08-093-2-16
TTTTCTGGAATTCCAGACAGAAX_XX_XX_X
10. _GC-08-093-2-16
TTTTCTGGAATTCCAGACAGAAX_XX_XX_X
11. _GC-08-093-2-16
TTTTCTGGAATTCCAGACAGAAX_XX_XX_X
12. _GC-08-093-2-16
TTTTCTGGAATTCCAGACAGAAX_XX_XX_X
13. _GC-08-093-2-16
TTTTCTGGAATTCCAGACAGAAX_XX_XX_X
14. _8216_1_>_FP
TT___CCGGAGCT_______________X_XX_XX_X
15. _8216_6
TT___CTGGAATT_______________X_XX_XX_X
16. _8216_7
TT___CTGGAATT_______________X_XX_XX_X
17. _8216_8
TT___CTGGAATT_______________X_XX_XX_X
18. _8216_9
TT___CTGGAATT_______________X_XX_XX_X
19. _8216_10
TT___CTGGAATT_______________X_XX_XX_X
20. _8216_12
TT___CTGGAATT_______________X_XX_XX_X
21. _8216_14
TT___CTGGAATT_______________X_XX_XX_X
22. _8216_16
TT___CTGGAATT_______________X_XX_XX_X
23. _8216_17
TT___CTGGAATT_______________X_XX_XX_X
24. _8216_18
TT___CTGGAATT_______________X_XX_XX_X
25. _8216_2_>_FP
TT___CTGGAATT_______________X_XX_XX_X
26. _8216_5_>_FP
TT___CTGGAATT_______________X_XX_XX_X
27. _Marper_D_250
TT___CCGGAGCT_______________X_XX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._SLC_24 GC-08-093-2-16
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018
2._SLC_24 GC-08-093-2-16
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018
3._SLC_24 GC-08-093-2-16
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018
4._SLC_24 GC-08-093-2-16
Location: Tree: 6
Notes: 6
 Mars, 2018
5._SLC_24 GC-08-093-2-16
Location: Tree: 7
Notes: 7
 Mars, 2018
6._SLC_24 GC-08-093-2-16
Location: Tree: 8
Notes: 8
 Mars, 2018
7._SLC_24 GC-08-093-2-16
Location: Tree: 9
Notes: 9
 Mars, 2018
8._SLC_24 GC-08-093-2-16
Location: Tree: 10
Notes: 10
 Mars, 2018
9._SLC_24 GC-08-093-2-16
Location: Tree: 12
Notes: 12
 Mars, 2018
10._SLC_24 GC-08-093-2-16
Location: Tree: 14
Notes: 14
 Mars, 2018
11._SLC_24 GC-08-093-2-16
Location: Tree: 16
Notes: 16
 Mars, 2018
12._SLC_24 GC-08-093-2-16
Location: Tree: 17
Notes: 17
 Mars, 2018
13._SLC_24 GC-08-093-2-16
Location: Tree: 18
Notes: 18
 Mars, 2018
14._SLC_24
Location: 8216 1 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016
15._SLC_24
Location: 8216 6
 Dapeng Zhang, 2016
16._SLC_24
Location: 8216 7
 Dapeng Zhang, 2016
17._SLC_24
Location: 8216 8
 Dapeng Zhang, 2016
18._SLC_24
Location: 8216 9
 Dapeng Zhang, 2016
19._SLC_24
Location: 8216 10
 Dapeng Zhang, 2016
20._SLC_24
Location: 8216 12
 Dapeng Zhang, 2016
21._SLC_24
Location: 8216 14
 Dapeng Zhang, 2016
22._SLC_24
Location: 8216 16
 Dapeng Zhang, 2016
23._SLC_24
Location: 8216 17
 Dapeng Zhang, 2016
24._SLC_24
Location: 8216 18
 Dapeng Zhang, 2016
25._SLC_24
Location: 8216 2 > FP
 Dapeng Zhang, 2016
26._SLC_24
Location: 8216 5 > FP
 Dapeng Zhang, 2016

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

27._SLC_24
Location: Marper D 250
 Dapeng Zhang, 2016

  Key to SNP Markers

1TcSNP25 2TcSNP28 3TcSNP32 4TcSNP42 5TcSNP60
6TcSNP75 7TcSNP90 8TcSNP122 9TcSNP144 10TcSNP150
11TcSNP151 12TcSNP154 13TcSNP174 14TcSNP193 15TcSNP226
16TcSNP230 17TcSNP240 18TcSNP242 19TcSNP316 20TcSNP329
21TcSNP364 22TcSNP372 23TcSNP413 24TcSNP418 25TcSNP429
26TcSNP430 27TcSNP448 28TcSNP469 29TcSNP521 30TcSNP529
31TcSNP534 32TcSNP547 33TcSNP560 34TcSNP561 35TcSNP577
36TcSNP591 37TcSNP602 38TcSNP606 39TcSNP619 40TcSNP645
41TcSNP653 42TcSNP689 43TcSNP701 44TcSNP702 45TcSNP723
46TcSNP731 47TcSNP751 48TcSNP776 49TcSNP799 50TcSNP823
51TcSNP836 52TcSNP860 53TcSNP872 54TcSNP878 55TcSNP891
56TcSNP894 57TcSNP899 58TcSNP917 59TcSNP929 60TcSNP944
61TcSNP953 62TcSNP994 63TcSNP998 64TcSNP999 65TcSNP1034
66TcSNP1041 67TcSNP1060 68TcSNP1062 69TcSNP1063 70TcSNP1075
71TcSNP1096 72TcSNP1111 73TcSNP1126 74TcSNP1144 75TcSNP1149
76TcSNP1156 77TcSNP1165 78TcSNP1175 79TcSNP1242 80TcSNP1253
81TcSNP1270 82TcSNP1309 83TcSNP1350 84TcSNP1383 85TcSNP1414
86TcSNP1439 87TcSNP1442 88TcSNP1458 89TcSNP1484 90TcSNP1520
91Tcm001s00947643 92Tcm002s20575712 93Tcm003s01336581 94Tcm003s07402719 95Tcm006s26664133