SNP Profiles of SLC 24   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1._SLC 24___
GGGGTTAGCCTTCCCTCCGGCTAAGGAC
2._SLC 24___
GGGGATGGCTTTACCCACGTCTAAGGAA
3._SLC 24___
GGGGATGGCTTTACCCACGTCTAAGGAA
4._SLC 24___
GGGGATGGCTTTACCCACGTCTAAGGAA
5._SLC 24___
GGGGATGGCTTTACCCACGTCTAAGGAA
6._SLC 24___
GGGGATGGCTTTACCCACGTCTAAGGAA
7._SLC 24___
GGGGATGGCTTTACCCACGTCTAAGGAA
8._SLC 24___
GGGGATGGCTTTACCCACGTCTAAGGAA
9._SLC 24___
GGGGATGGCTTTACCCACGTCTAAGGAA
10._SLC 24___
GGGGATGGCTTTACCCACGTCTAAGGAA
11._SLC 24___
GGGGATGGCTTTACCCACGTCTAAGGAA
12._SLC 24___
GGGGATGGCTTTACCCACGT___AAGGAA
13._SLC 24___
GGGGATGGCTTTACCCACGTCTAAGGAA
14._SLC 24___
GG___TT_______________CCGGCT______AC
15._SLC 24___
GG___AT_______________ACGTCT______AA
16._SLC 24___
GG___AT_______________ACGTCT______AA
17._SLC 24___
GG___AT_______________ACGTCT______AA
18._SLC 24___
GG___AT_______________ACGTCT______AA
19._SLC 24___
GG___AT_______________ACGTCT______AA
20._SLC 24___
GG___AT_______________ACGTCT______AA
21._SLC 24___
GG___AT_______________ACGTCT______AA
22._SLC 24___
GG___AT_______________ACGTCT______AA
23._SLC 24___
GG___AT_______________ACGT_________AA
24._SLC 24___
GG___AT_______________ACGTCT______AA
25._SLC 24___
GG___AT_______________ACGTCT______AA
26._SLC 24___
GG___AT_______________ACGTCT______AA
27._SLC 24___
GG___TT_______________CCGGCT______AC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1._SLC 24___
CCAAGGCCATGGGGAACTAGAGAACCAG
2._SLC 24___
CCAGGGCCATGGGGATTTAGGGAACGAA
3._SLC 24___
CCAGGGCCATGGGGATTTAGGGAACGAA
4._SLC 24___
CCAGGGCCATGGGGATTTAGGGAACGAA
5._SLC 24___
CCAGGGCCATGGGGATTTAGGGAACGAA
6._SLC 24___
CCAGGGCCATGGGGATTTAGGGAACGAA
7._SLC 24___
CCAGGGCCATGGGGATTTAGGGAACGAA
8._SLC 24___
CCAGGGCCATGGGGATTTAGGGAACGAA
9._SLC 24___
CCAGGGCCATGGGGATTTAGGGAACGAA
10._SLC 24___
CCAGGGCCATGGGGATTTAGGGAACGAA
11._SLC 24___
CCAGGGCCATGGGGATTTAGGGAACGAA
12._SLC 24___
CCAGGGCCATGGGGATTTAGGGAACGAA
13._SLC 24___
CCAGGGCCATGGGGATTTAGGGAACGAA
14._SLC 24___
CCAA___CC_________AA______AG______AG
15._SLC 24___
CCAG___CC_________AT______GG______AA
16._SLC 24___
CCAG___CC_________AT______GG______AA
17._SLC 24___
CCAG___CC_________AT______GG______AA
18._SLC 24___
CCAG___CC_________AT______GG______AA
19._SLC 24___
CCAG___CC_________AT______GG______AA
20._SLC 24___
CCAG___CC_________AT______GG______AA
21._SLC 24___
CCAG___CC_________AT______GG______AA
22._SLC 24___
CCAG___CC_________AT______GG______AA
23._SLC 24___
CCAG___CC_________AT______GG______AA
24._SLC 24___
CCAG___CC_________AT______GG______AA
25._SLC 24___
CCAG___CC_________AT______GG______AA
26._SLC 24___
CCAG___CC_________AT______GG______AA
27._SLC 24___
CCAA___CC_________AA______AG______AG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1._SLC 24___
ACACTTAGGTAGGGCCCTAACTAGAAAA
2._SLC 24___
CCCCTTGGGTAACCCC___AACT___AAAG
3._SLC 24___
CCCCTTGGGTAACCCCCTAACT___AAAG
4._SLC 24___
CCCCTTGGGTAACCCCCTAACT___AAAG
5._SLC 24___
CCCCTTGGGTAACCCCCTAACT___AAAG
6._SLC 24___
CCCCTTGGGTAACCCCCTAACT___AAAG
7._SLC 24___
CCCCTTGGGTAACCCCCTAACT___AAAG
8._SLC 24___
CCCCTTGGGTAACCCCCTAACT___AAAG
9._SLC 24___
CCCCTTGGGTAACCCCCTAACT___AAAG
10._SLC 24___
CCCCTTGGGTAACCCCCTAACT___AAAG
11._SLC 24___
CCCCTTGGGTAACCCCCTAACT___AAAG
12._SLC 24___
CCCCTTGGGTAACCCCCTAACT___AAAG
13._SLC 24___
CCCCTTGGGTAACCCCCTAACT___AAAG
14._SLC 24___
___ACTT___GT___GGCC______CTAG______
15._SLC 24___
___CCTT___GT___CCCC______CT_________
16._SLC 24___
___CCTT___GT___CCCC______CT_________
17._SLC 24___
___CCTT___GT___CCCC______CT_________
18._SLC 24___
___CCTT___GT___CCCC______CT_________
19._SLC 24___
___CCTT___GT___CCCC______CT_________
20._SLC 24___
___CCTT___GT___CCCC______CT_________
21._SLC 24___
___CCTT___GT___CCCC______CT_________
22._SLC 24___
___CCTT___GT___CCCC______CT_________
23._SLC 24___
___CCTT___GT___CCCC______CT_________
24._SLC 24___
___CCTT___GT___CCCC______CT_________
25._SLC 24___
___CCTT___GT___CCCC______CT_________
26._SLC 24___
___CCTT___GT___CCCC______CT_________
27._SLC 24___
___ACTT___GT___GGCC______CTGG______
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1._SLC 24___
CTCTGTAGTTTTTTCCCGAAGGCGCTCC
2._SLC 24___
TTCCTTAGGTTTGTACGGAACGCGCCCC
3._SLC 24___
TTCCTTAGGTTTGTACGGAACGCGCCCC
4._SLC 24___
TTCCTTAGGTTTGTACGGAACGCGCCCC
5._SLC 24___
TTCCTTAGGTTTGTACGGAACGCGCCCC
6._SLC 24___
TTCCTTAGGTTTGTACGGAACGCGCCCC
7._SLC 24___
TTCCTTAGGTTTGTACGGAACGCGCCCC
8._SLC 24___
TTCCTTAGGTTTGTACGGAACGCGCCCC
9._SLC 24___
TTCCTTAGGTTTGTACGGAACGCGCCCC
10._SLC 24___
TTCCTTAGGTTTGTACGGAACGCGCCCC
11._SLC 24___
TTCCTTAGGTTTGTACGGAACGCGCCCC
12._SLC 24___
TTCCTTAGGTTTGTACGGAACGCGCCCC
13._SLC 24___
TTCCTTAGGTTTGTACGGAACGCGCCCC
14._SLC 24___
______GT_____________________GG___CT___
15._SLC 24___
______TT_____________________CG___CC___
16._SLC 24___
______TT_____________________CG___CC___
17._SLC 24___
______TT_____________________CG___CC___
18._SLC 24___
______TT_____________________CG___CC___
19._SLC 24___
______TT_____________________CG___CC___
20._SLC 24___
______TT_____________________CG___CC___
21._SLC 24___
______TT_____________________CG___CC___
22._SLC 24___
______TT_____________________CG___CC___
23._SLC 24___
______TT_____________________CG___CC___
24._SLC 24___
______TT_____________________CG___CC___
25._SLC 24___
______TT_____________________CG___CC___
26._SLC 24___
______TT_____________________CG___CC___
27._SLC 24___
______GT_____________________GG___CT___
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1._SLC 24___
AGCTGGCCTTTTAACTTTCCCCAGGGAT
2._SLC 24___
GGTTGGCTAATTAGTTCTCCCTAAGTAA
3._SLC 24___
GGTTGGCTAATTAGTTCTCCCTAAGTAA
4._SLC 24___
GGTTGGCTAATTAGTTCTCCCTAAGTAA
5._SLC 24___
GGTTGGCTAATTAGTTCTCCCTAAGTAA
6._SLC 24___
GGTTGGCTAATTAGTTCTCCCTAAGTAA
7._SLC 24___
GGTTGGCTAATTAGTTCTCCCTAAGTAA
8._SLC 24___
GGTTGGCTAATTAGTTCTCCCTAAGTAA
9._SLC 24___
GGTTGGCTAATTAGTTCTCCCTAAGTAA
10._SLC 24___
GGTTGGCTAATTAGTTCTCCCTAAGTAA
11._SLC 24___
GG___GGCTAATTAGTTCTCCCTAAGTAA
12._SLC 24___
GGTTGGCTAATTAGTTCTCCCTAAGTAA
13._SLC 24___
GGTTGGCTAATTAGTTCTCCCTAAGTAA
14._SLC 24___
___CTGG___TTTTAA_________CCAG___AT
15._SLC 24___
___TTGG___AATTAG_________CTAA___AA
16._SLC 24___
___TTGG___AATTAG_________CTAA___AA
17._SLC 24___
___TTGG___AATTAG_________CTAA___AA
18._SLC 24___
___TTGG___AATTAG_________CTAA___AA
19._SLC 24___
___TTGG___AATTAG_________CTAA___AA
20._SLC 24___
___TTGG___AATTAG_________CTAA___AA
21._SLC 24___
___TTGG___AATTAG_________CTAA___AA
22._SLC 24___
______GG___AATTAG_________CTAA___AA
23._SLC 24___
___TTGG___AATTAG_________CTAA___AA
24._SLC 24___
___TTGG___AATTAG_________CTAA___AA
25._SLC 24___
___TTGG___AATTAG_________CTAA___AA
26._SLC 24___
___TTGG___AATTAG_________CTAA___AA
27._SLC 24___
___CTGG___TTTTAA_________CCAG___AT
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1._SLC 24___
CTGGTTCTCTTTCCGGAATTCTTTAAGG
2._SLC 24___
CCAGATTTTTTTCTGGCCGTCC___AAGG
3._SLC 24___
CCAGATTTTTTTCTGGCCGTCC___AAGG
4._SLC 24___
CCAGATTTTTTTCTGGCCGTCC___AAGG
5._SLC 24___
CCAGATTTTTTTCTGGCCGTCCTTAAGG
6._SLC 24___
CCAGATTTTTTTCTGGCCGTCCTTAAGG
7._SLC 24___
CCAGATTTTTTTCTGGCCGTCC___AAGG
8._SLC 24___
CCAGATTTTTTTCTGGCCGTCCTTAAGG
9._SLC 24___
CCAGATTTTTTTCTGGCCGTCC___AAGG
10._SLC 24___
CCAGATTTTTTTCTGGCCGTCC___AAGG
11._SLC 24___
CCAGATTTTTTTCTGGCCGTCC___AAGG
12._SLC 24___
CCAGATTTTTTTCTGGCCGTCC___AAGG
13._SLC 24___
CCAGATTTTTTTCTGGCCGTCC___AAGG
14._SLC 24___
_________CT______CC______TTCT___AA___
15._SLC 24___
_________TT______CT______GTCC___AA___
16._SLC 24___
_________TT______CT______GTCC___AA___
17._SLC 24___
_________TT______CT______GTCC___AA___
18._SLC 24___
_________TT______CT______GTCC___AA___
19._SLC 24___
_________TT______CT______GTCC___AA___
20._SLC 24___
_________TT______CT______GTCC___AA___
21._SLC 24___
_________TT______CT______GTCC___AA___
22._SLC 24___
_________TT______CT______GTCC___AA___
23._SLC 24___
_________TT______CT______GTCC___AA___
24._SLC 24___
_________TT______CT______GTCC___AA___
25._SLC 24___
_________TT______CT______GTCC___AA___
26._SLC 24___
_________TT______CT______GTCC___AA___
27._SLC 24___
_________CT______CC______TTCT___AC___
 85 86 87 88 89 90 91 92 93 94 95    
1._SLC 24___
TTCTCCGGAGCTACAAACAGAAX_XX_XX_X
2._SLC 24___
TTTTCTGGAATTCCAGACAGAAX_XX_XX_X
3._SLC 24___
TTTTCTGGAATTCCAGACAGAAX_XX_XX_X
4._SLC 24___
TTTTCTGGAATTCCAGACAGAAX_XX_XX_X
5._SLC 24___
TTTTCTGGAATTCCAGACAGAAX_XX_XX_X
6._SLC 24___
TTTTCTGGAATTCC___ACAGAAX_XX_XX_X
7._SLC 24___
TTTTCTGGAATTCCAGACAGAAX_XX_XX_X
8._SLC 24___
TTTTCTGGAATTCCAGACAGAAX_XX_XX_X
9._SLC 24___
TTTTCTGGAATTCCAGACAGAAX_XX_XX_X
10._SLC 24___
TTTTCTGGAATTCCAGACAGAAX_XX_XX_X
11._SLC 24___
TTTTCTGGAATTCCAGACAGAAX_XX_XX_X
12._SLC 24___
TTTTCTGGAATTCCAGACAGAAX_XX_XX_X
13._SLC 24___
TTTTCTGGAATTCCAGACAGAAX_XX_XX_X
14._SLC 24___
TT___CCGGAGCT_______________X_XX_XX_X
15._SLC 24___
TT___CTGGAATT_______________X_XX_XX_X
16._SLC 24___
TT___CTGGAATT_______________X_XX_XX_X
17._SLC 24___
TT___CTGGAATT_______________X_XX_XX_X
18._SLC 24___
TT___CTGGAATT_______________X_XX_XX_X
19._SLC 24___
TT___CTGGAATT_______________X_XX_XX_X
20._SLC 24___
TT___CTGGAATT_______________X_XX_XX_X
21._SLC 24___
TT___CTGGAATT_______________X_XX_XX_X
22._SLC 24___
TT___CTGGAATT_______________X_XX_XX_X
23._SLC 24___
TT___CTGGAATT_______________X_XX_XX_X
24._SLC 24___
TT___CTGGAATT_______________X_XX_XX_X
25._SLC 24___
TT___CTGGAATT_______________X_XX_XX_X
26._SLC 24___
TT___CTGGAATT_______________X_XX_XX_X
27._SLC 24___
TT___CCGGAGCT_______________X_XX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._SLC_24 GC-08-093-2-16

Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._SLC_24 GC-08-093-2-16

Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

3._SLC_24 GC-08-093-2-16

Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

4._SLC_24 GC-08-093-2-16

Location: Tree: 6
Notes: 6
 Mars, 2018

5._SLC_24 GC-08-093-2-16

Location: Tree: 7
Notes: 7
 Mars, 2018

6._SLC_24 GC-08-093-2-16

Location: Tree: 8
Notes: 8
 Mars, 2018

7._SLC_24 GC-08-093-2-16

Location: Tree: 9
Notes: 9
 Mars, 2018

8._SLC_24 GC-08-093-2-16

Location: Tree: 10
Notes: 10
 Mars, 2018

9._SLC_24 GC-08-093-2-16

Location: Tree: 12
Notes: 12
 Mars, 2018

10._SLC_24 GC-08-093-2-16

Location: Tree: 14
Notes: 14
 Mars, 2018

11._SLC_24 GC-08-093-2-16

Location: Tree: 16
Notes: 16
 Mars, 2018

12._SLC_24 GC-08-093-2-16

Location: Tree: 17
Notes: 17
 Mars, 2018

13._SLC_24 GC-08-093-2-16

Location: Tree: 18
Notes: 18
 Mars, 2018

14._SLC_24

Location: 8216 1 > FP
 Dapeng Zhang, 2016

15._SLC_24

Location: 8216 6
 Dapeng Zhang, 2016

16._SLC_24

Location: 8216 7
 Dapeng Zhang, 2016

17._SLC_24

Location: 8216 8
 Dapeng Zhang, 2016

18._SLC_24

Location: 8216 9
 Dapeng Zhang, 2016

19._SLC_24

Location: 8216 10
 Dapeng Zhang, 2016

20._SLC_24

Location: 8216 12
 Dapeng Zhang, 2016

21._SLC_24

Location: 8216 14
 Dapeng Zhang, 2016

22._SLC_24

Location: 8216 16
 Dapeng Zhang, 2016

23._SLC_24

Location: 8216 17
 Dapeng Zhang, 2016

24._SLC_24

Location: 8216 18
 Dapeng Zhang, 2016

25._SLC_24

Location: 8216 2 > FP
 Dapeng Zhang, 2016

26._SLC_24

Location: 8216 5 > FP
 Dapeng Zhang, 2016

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

27._SLC_24

Location: Marper D 250
 Dapeng Zhang, 2016

  Key to SNP Markers

1TcSNP25 2TcSNP28 3TcSNP32 4TcSNP42 5TcSNP60
6TcSNP75 7TcSNP90 8TcSNP122 9TcSNP144 10TcSNP150
11TcSNP151 12TcSNP154 13TcSNP174 14TcSNP193 15TcSNP226
16TcSNP230 17TcSNP240 18TcSNP242 19TcSNP316 20TcSNP329
21TcSNP364 22TcSNP372 23TcSNP413 24TcSNP418 25TcSNP429
26TcSNP430 27TcSNP448 28TcSNP469 29TcSNP521 30TcSNP529
31TcSNP534 32TcSNP547 33TcSNP560 34TcSNP561 35TcSNP577
36TcSNP591 37TcSNP602 38TcSNP606 39TcSNP619 40TcSNP645
41TcSNP653 42TcSNP689 43TcSNP701 44TcSNP702 45TcSNP723
46TcSNP731 47TcSNP751 48TcSNP776 49TcSNP799 50TcSNP823
51TcSNP836 52TcSNP860 53TcSNP872 54TcSNP878 55TcSNP891
56TcSNP894 57TcSNP899 58TcSNP917 59TcSNP929 60TcSNP944
61TcSNP953 62TcSNP994 63TcSNP998 64TcSNP999 65TcSNP1034
66TcSNP1041 67TcSNP1060 68TcSNP1062 69TcSNP1063 70TcSNP1075
71TcSNP1096 72TcSNP1111 73TcSNP1126 74TcSNP1144 75TcSNP1149
76TcSNP1156 77TcSNP1165 78TcSNP1175 79TcSNP1242 80TcSNP1253
81TcSNP1270 82TcSNP1309 83TcSNP1350 84TcSNP1383 85TcSNP1414
86TcSNP1439 87TcSNP1442 88TcSNP1458 89TcSNP1484 90TcSNP1520
91Tcm001s00947643 92Tcm002s20575712 93Tcm003s01336581 94Tcm003s07402719 95Tcm006s26664133