SNP Profiles of RB 47   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
GGCCTTGGCTCGCCTTGGCCAAGGAACC
1._RB_47_[BRA]___
CCCCTTGGCTCGCCTTCCGGAA__AACC
2._RB_47_[BRA]___
CCCCTTGGCTCGCCTTCCGGAAGGAACC
3._RB_47_[BRA]___
CCCCTTGGCTCGCCTTCCGGAAGGAACC
4._RB_47_[BRA]___
CCCCTTGGCTCGCCTTCCGGAAGGAACC
5._RB_47_[BRA]___
CCCCTTGGCTCGCCTTCCGGAAGGAACC
6._RB_47_[BRA]___
CCCCTTGGCTCGCCTTCCGGAAGGAACC
7._RB_47_[BRA]___
CCCCTTGGCTCGCCTTCCGGAAGGAACC
8._RB_47_[BRA]___
CCCCTTGGCTCGCCTTCCGGAAGGAACC
9._RB_47_[BRA]___
CCCCTTGGCTCGCCTTCCGGAAGGAACC
10._RB_47_[BRA]___
CCCCTTGGCTCGCCTTCCGGAAGGAACC
11._RB_47_[BRA]___
CCCCTTGGCTCGCCTTCCGGAAGGAACC
12._RB_47_[BRA]___
CCCCTTGGCTCGCCTTCCGGAAGGAACC
13._RB_47_[BRA]___
CCCCTTGGCTCGCCTTCCGGAAGGAACC
14._RB_47_[BRA]___
CCCCTTGGCTCGCCTTCCGGAAGGAACC
15._RB_47_[BRA]___
CCCCTTGGCTCGCCTTCCGGAAGGAACC
16._RB_47_[BRA]___
CCCCTTGGCTCGCCTTCCGGAAGGAACC
17._RB_47_[BRA]___
CCCCTTGGCTCGCCTTCCGGAAGGAACC
18._RB_47_[BRA]___
CCCCTTGGCTCGCCTTCCGGAAGGAACC
19._RB_47_[BRA]___
CCCCTTGGCTCGCCTTCCGGAAGGAACC
20._RB_47_[BRA]___
CCCCTTGGCTCGCCTTCCGGAAGGAACC
21._RB_47_[BRA]___
CCCCTTGGCTCGCCTTCCGGAAGGAACC
22._RB_47_[BRA]___
CCCCTTGGCTCGCCTTCCGGAA__AACC
23._RB_47_[BRA]___
CCCCTTGGCTCGCCTTCCGGAA__AACC
24._RB_47_[BRA]___
CC__________CCTT__GG________
25._RB_47_[BRA]___
CC______CT__CCTT__GG________
26._RB_47_[BRA]___
CCCCTTGG______TTCCGG______CC
27._RB_47_[BRA]___
CC______CT__CCTT__GG________
28._RB_47_[BRA]___
CC______CT__CCTT__GG________
29._RB_47_[BRA]___
CC______CT__CCTT__GG________
30._RB_47_[BRA]___
CC______CT__CCTT__GG________
31._RB_47_[BRA]___
CC______CT__CCTT__GG________
32._RB_47_[BRA]___
CC______CT__CCTT__GG________
33._RB_47_[BRA]___
CC______CT__CCTT__GG________
34._RB_47_[BRA]___
CC______CT__CCTT__GG________
35._RB_47_[BRA]___
CC______CT__CCTT__GG________
36._RB_47_[BRA]___
CC______CT__CCTT__GG________
37._RB_47_[BRA]___
CC______CT__CCTT__GG________
38._RB_47_[BRA]___
CC______CT__CCTT__GG________
39._RB_47_[BRA]___
CC______CT__CCTT__GG________
40._RB_47_[BRA]___
CC______CT__CCTT__GG________
41._RB_47_[BRA]___
CC______CT__CCTT__GG________
42._RB_47_[BRA]___
CC______CT__CCTT__GG________
43._RB_47_[BRA]___
CC______CT__CCTT__GG________
44._RB_47_[BRA]___
CC______CT__CCTT__GG________
45._RB_47_[BRA]___
CC______CT__CCTT__GG________
46._RB_47_[BRA]___
CC______CT__CCTT__GG________
47._RB_47_[BRA]___
CC______CT__CCTT__GG________
48._RB_47_[BRA]___
CC______CT__CCTT__GG________
49._RB_47_[BRA]___
CC______CT__CCTT__GG________
50._RB_47_[BRA]___
__GG__GGAG__GGAA__CCAACC__GG
 15 16 17 18 19 20 21 22 23 24 25 26   
_Input profile
CCGGGGCCAAGGAACCCCGGCCACX_XX_X
1._RB_47_[BRA]___
CCGGGGCCAAGGAA__ACGGCCACX_XX_X
2._RB_47_[BRA]___
CCGGGGCCAAGGAAGGCCGGCCACX_XX_X
3._RB_47_[BRA]___
CCGGGGCCAAGGAAGGCCGGCCACX_XX_X
4._RB_47_[BRA]___
CCGGGGCCAAGGAAGGCCGGCCACX_XX_X
5._RB_47_[BRA]___
CCGGGGCCAAGGAAGGCCGGCCACX_XX_X
6._RB_47_[BRA]___
CCGGGGCCAAGGAAGGCCGGCCACX_XX_X
7._RB_47_[BRA]___
CCGGGGCCAAGGAAGGCCGGCCACX_XX_X
8._RB_47_[BRA]___
CCGGGGCCAAGGAAGGCCGGCCACX_XX_X
9._RB_47_[BRA]___
CCGGGGCCAAGGAAGGCCGGCCACX_XX_X
10._RB_47_[BRA]___
CCGGGGCCAAGGAAGGCCGGCCACX_XX_X
11._RB_47_[BRA]___
CCGGGGCCAAGGAAGGCCGGCCACX_XX_X
12._RB_47_[BRA]___
CCGGGGCCAAGGAAGGCCGGCCACX_XX_X
13._RB_47_[BRA]___
CCGGGGCCAAGGAAGGCCGGCCACX_XX_X
14._RB_47_[BRA]___
CCGGGGCCAAGGAAGGCCGGCCACX_XX_X
15._RB_47_[BRA]___
CCGGGGCCAAGGAAGGCCGGCCACX_XX_X
16._RB_47_[BRA]___
CCGGGGCCAAGGAAGGCCGGCCACX_XX_X
17._RB_47_[BRA]___
CCGGGGCCAAGGAAGGCCGGCCACX_XX_X
18._RB_47_[BRA]___
CCGGGGCCAAGGAAGGCCGGCCACX_XX_X
19._RB_47_[BRA]___
CCGGGGCCAAGGAAGGCCGG__ACX_XX_X
20._RB_47_[BRA]___
CCGGGGCCAAGGAAGG__GGCCACX_XX_X
21._RB_47_[BRA]___
CCGGGGCCAAGG__GGCCGGCCACX_XX_X
22._RB_47_[BRA]___
CCGGGGCCAAGGAAGGCCGGCCACX_XX_X
23._RB_47_[BRA]___
CCGGGGCCAAGGAAGG__GGCCACX_XX_X
24._RB_47_[BRA]___
CCGG____AA__AA__CC__CCACX_XX_X
25._RB_47_[BRA]___
CCGG____AA__AA__AC__CCACX_XX_X
26._RB_47_[BRA]___
CCGGGG__AAGGAAGGCCGGCCACX_XX_X
27._RB_47_[BRA]___
CCGG____AA__AAGGCC__CCACX_XX_X
28._RB_47_[BRA]___
CCGG____AA__AAGGCC__CCACX_XX_X
29._RB_47_[BRA]___
CCGG____AA__AAGGCC__CCACX_XX_X
30._RB_47_[BRA]___
CCGG____AA__AAGGCC__CCACX_XX_X
31._RB_47_[BRA]___
CCGG____AA__AAGGCC__CCACX_XX_X
32._RB_47_[BRA]___
CCGG____AA__AAGGCC__CCACX_XX_X
33._RB_47_[BRA]___
CCGG____AA__AAGGCC__CCACX_XX_X
34._RB_47_[BRA]___
CCGG____AA__AAGGCC__CCACX_XX_X
35._RB_47_[BRA]___
CCGG____AA__AAGGCC__CCACX_XX_X
36._RB_47_[BRA]___
CCGG____AA__AAGGCC__CCACX_XX_X
37._RB_47_[BRA]___
CCGG____AA__AAGGCC__CCACX_XX_X
38._RB_47_[BRA]___
CCGG____AA__AAGGCC__CCACX_XX_X
39._RB_47_[BRA]___
CCGG____AA__AAGGCC__CCACX_XX_X
40._RB_47_[BRA]___
CCGG____AA__AAGGCC__CCACX_XX_X
41._RB_47_[BRA]___
CCGG____AA__AAGGCC__CCACX_XX_X
42._RB_47_[BRA]___
CCGG____AA__AAGGCC__CCACX_XX_X
43._RB_47_[BRA]___
CCGG____AA__AAGGCC__CCACX_XX_X
44._RB_47_[BRA]___
CCGG____AA__AAGGCC__CCACX_XX_X
45._RB_47_[BRA]___
CCGG____AA__AAGGCC__CCACX_XX_X
46._RB_47_[BRA]___
CCGG____AA____GGCC__CCACX_XX_X
47._RB_47_[BRA]___
CCGG____AA__AAGGCC____ACX_XX_X
48._RB_47_[BRA]___
CCGG____AA__AAGG____CCACX_XX_X
49._RB_47_[BRA]___
CCGG____AA__AAGG____CCACX_XX_X
50._RB_47_[BRA]___
CCGGCCGGAAGGAACCCCGGGGACX_XX_X

Input profile: RB_47_[BRA] RUQ_135

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

1._RB_47_[BRA] GC-08-065-1-87

85.4 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

2._RB_47_[BRA] GC-05-101-3-03

84.6 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

3._RB_47_[BRA] GC-05-101-3-03

84.6 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

4._RB_47_[BRA] GC-05-101-3-03

84.6 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

5._RB_47_[BRA] GC-05-101-3-03

84.6 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

6._RB_47_[BRA] GC-05-101-3-03

84.6 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

7._RB_47_[BRA] GC-05-161-4-14

84.6 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP3
 Mars, 2018

8._RB_47_[BRA] GC-05-161-4-14

84.6 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

9._RB_47_[BRA] GC-05-161-4-14

84.6 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

10._RB_47_[BRA] GC-05-161-4-14

84.6 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

11._RB_47_[BRA] GC-05-161-4-14

84.6 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

12._RB_47_[BRA] GC-08-065-1-87

84.6 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

13._RB_47_[BRA] GC-08-065-1-87

84.6 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

14._RB_47_[BRA] GC-08-065-1-87

84.6 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

15._RB_47_[BRA] GC-08-065-1-87

84.6 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

16._RB_47_[BRA] GC-08-065-1-87

84.6 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

17._RB_47_[BRA] GC-08-065-1-87

84.6 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

18._RB_47_[BRA] GC-08-065-1-87

84.6 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

19._RB_47_[BRA] GC-05-161-4-14

84 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

20._RB_47_[BRA] GC-08-065-1-87

84 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

21._RB_47_[BRA] GC-08-065-1-87

84 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

22._RB_47_[BRA] GC-08-065-1-87

84 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

23._RB_47_[BRA] GC-08-065-1-87

83.3 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

24._RB_47_[BRA]

81.8 %
11 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

25._RB_47_[BRA]

79.2 %
12 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8187 12
 Dapeng Zhang, 2016

26._RB_47_[BRA] RUQ_135

78.9 %
19 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

27._RB_47_[BRA]

76.9 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8187 11
 Dapeng Zhang, 2016

28._RB_47_[BRA]

76.9 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5303 1
 Dapeng Zhang, 2016

29._RB_47_[BRA]

76.9 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5303 3
 Dapeng Zhang, 2016

30._RB_47_[BRA]

76.9 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5303 4
 Dapeng Zhang, 2016

31._RB_47_[BRA]

76.9 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5303 5
 Dapeng Zhang, 2016

32._RB_47_[BRA]

76.9 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5303 2 > FP
 Dapeng Zhang, 2016

33._RB_47_[BRA]

76.9 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5414 2
 Dapeng Zhang, 2016

34._RB_47_[BRA]

76.9 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5414 3
 Dapeng Zhang, 2016

35._RB_47_[BRA]

76.9 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5414 4
 Dapeng Zhang, 2016

36._RB_47_[BRA]

76.9 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5414 5
 Dapeng Zhang, 2016

37._RB_47_[BRA]

76.9 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5414 1 > FP
 Dapeng Zhang, 2016

38._RB_47_[BRA]

76.9 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8187 3
 Dapeng Zhang, 2016

39._RB_47_[BRA]

76.9 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8187 4
 Dapeng Zhang, 2016

40._RB_47_[BRA]

76.9 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8187 5
 Dapeng Zhang, 2016

41._RB_47_[BRA]

76.9 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8187 6
 Dapeng Zhang, 2016

42._RB_47_[BRA]

76.9 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8187 7
 Dapeng Zhang, 2016

43._RB_47_[BRA]

76.9 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8187 8
 Dapeng Zhang, 2016

44._RB_47_[BRA]

76.9 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8187 9
 Dapeng Zhang, 2016

45._RB_47_[BRA] RUQ_135

76.9 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

46._RB_47_[BRA]

75 %
12 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8187 10
 Dapeng Zhang, 2016

47._RB_47_[BRA]

75 %
12 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5414 2
 Dapeng Zhang, 2016

48._RB_47_[BRA]

75 %
12 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8187 1
 Dapeng Zhang, 2016

49._RB_47_[BRA]

75 %
12 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8187 2
 Dapeng Zhang, 2016

50._RB_47_[BRA] GC-05-101-3-3

57.1 %
21 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 3, Rep: 3, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1458 2TcSNP1439 3TcSNP1126 4TcSNP1111 5TcSNP1060
6TcSNP1041 7TcSNP994 8TcSNP891 9TcSNP878 10TcSNP872
11TcSNP860 12TcSNP751 13TcSNP606 14TcSNP602 15TcSNP591
16TcSNP577 17TcSNP448 18TcSNP413 19TcSNP372 20TcSNP364
21TcSNP230 22TcSNP226 23TcSNP193 24TcSNP174 25TcSNP151
26TcSNP144