SNP Profiles of RB 47 [BRA]   View Data

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 Key

 1234567891011121314
_Input profile
GGCCTTGGCTCGCCTTGGCCAAGGAACC
1._GC-08-065-1-87
CCCCTTGGCTCGCCTTCCGGAA_AACC
2._GC-05-101-3-03
CCCCTTGGCTCGCCTTCCGGAAGGAACC
3._GC-05-101-3-03
CCCCTTGGCTCGCCTTCCGGAAGGAACC
4._GC-05-101-3-03
CCCCTTGGCTCGCCTTCCGGAAGGAACC
5._GC-05-101-3-03
CCCCTTGGCTCGCCTTCCGGAAGGAACC
6._GC-05-101-3-03
CCCCTTGGCTCGCCTTCCGGAAGGAACC
7._GC-05-161-4-14
CCCCTTGGCTCGCCTTCCGGAAGGAACC
8._GC-05-161-4-14
CCCCTTGGCTCGCCTTCCGGAAGGAACC
9._GC-05-161-4-14
CCCCTTGGCTCGCCTTCCGGAAGGAACC
10._GC-05-161-4-14
CCCCTTGGCTCGCCTTCCGGAAGGAACC
11._GC-05-161-4-14
CCCCTTGGCTCGCCTTCCGGAAGGAACC
12._GC-08-065-1-87
CCCCTTGGCTCGCCTTCCGGAAGGAACC
13._GC-08-065-1-87
CCCCTTGGCTCGCCTTCCGGAAGGAACC
14._GC-08-065-1-87
CCCCTTGGCTCGCCTTCCGGAAGGAACC
15._GC-08-065-1-87
CCCCTTGGCTCGCCTTCCGGAAGGAACC
16._GC-08-065-1-87
CCCCTTGGCTCGCCTTCCGGAAGGAACC
17._GC-08-065-1-87
CCCCTTGGCTCGCCTTCCGGAAGGAACC
18._GC-08-065-1-87
CCCCTTGGCTCGCCTTCCGGAAGGAACC
19._GC-05-161-4-14
CCCCTTGGCTCGCCTTCCGGAAGGAACC
20._GC-08-065-1-87
CCCCTTGGCTCGCCTTCCGGAAGGAACC
21._GC-08-065-1-87
CCCCTTGGCTCGCCTTCCGGAAGGAACC
22._GC-08-065-1-87
CCCCTTGGCTCGCCTTCCGGAA_AACC
23._GC-08-065-1-87
CCCCTTGGCTCGCCTTCCGGAA_AACC
24._RB_47_[BRA]
CC_____CCTT_GG____
25._RB_47_[BRA]
CC___CT_CCTT_GG____
26._RUQ_135
CCCCTTGG-__TTCCGG___CC
27._RB_47_[BRA]
CC___CT_CCTT_GG____
28._RB_47_[BRA]
CC___CT_CCTT_GG____
29._RB_47_[BRA]
CC___CT_CCTT_GG____
30._RB_47_[BRA]
CC___CT_CCTT_GG____
31._RB_47_[BRA]
CC___CT_CCTT_GG____
32._RB_47_[BRA]
CC___CT_CCTT_GG____
33._RB_47_[BRA]
CC___CT_CCTT_GG____
34._RB_47_[BRA]
CC___CT_CCTT_GG____
35._RB_47_[BRA]
CC___CT_CCTT_GG____
36._RB_47_[BRA]
CC___CT_CCTT_GG____
37._RB_47_[BRA]
CC___CT_CCTT_GG____
38._RB_47_[BRA]
CC___CT_CCTT_GG____
39._RB_47_[BRA]
CC___CT_CCTT_GG____
40._RB_47_[BRA]
CC___CT_CCTT_GG____
41._RB_47_[BRA]
CC___CT_CCTT_GG____
42._RB_47_[BRA]
CC___CT_CCTT_GG____
43._RB_47_[BRA]
CC___CT_CCTT_GG____
44._RB_47_[BRA]
CC___CT_CCTT_GG____
45._RUQ_135
CC___CT_CCTT_GG____
46._RB_47_[BRA]
CC___CT_CCTT_GG____
47._RB_47_[BRA]
CC___CT_CCTT_GG____
48._RB_47_[BRA]
CC___CT_CCTT_GG____
49._RB_47_[BRA]
CC___CT_CCTT_GG____
50._GC-05-101-3-3
_GG_GGAG_GGAA_CCAACC_GG
 151617181920212223242526  
_Input profile
CCGGGGCCAAGGAACCCCGGCCACX_XX_X
1._GC-08-065-1-87
CCGGGGCCAAGGAA_ACGGCCACX_XX_X
2._GC-05-101-3-03
CCGGGGCCAAGGAAGGCCGGCCACX_XX_X
3._GC-05-101-3-03
CCGGGGCCAAGGAAGGCCGGCCACX_XX_X
4._GC-05-101-3-03
CCGGGGCCAAGGAAGGCCGGCCACX_XX_X
5._GC-05-101-3-03
CCGGGGCCAAGGAAGGCCGGCCACX_XX_X
6._GC-05-101-3-03
CCGGGGCCAAGGAAGGCCGGCCACX_XX_X
7._GC-05-161-4-14
CCGGGGCCAAGGAAGGCCGGCCACX_XX_X
8._GC-05-161-4-14
CCGGGGCCAAGGAAGGCCGGCCACX_XX_X
9._GC-05-161-4-14
CCGGGGCCAAGGAAGGCCGGCCACX_XX_X
10._GC-05-161-4-14
CCGGGGCCAAGGAAGGCCGGCCACX_XX_X
11._GC-05-161-4-14
CCGGGGCCAAGGAAGGCCGGCCACX_XX_X
12._GC-08-065-1-87
CCGGGGCCAAGGAAGGCCGGCCACX_XX_X
13._GC-08-065-1-87
CCGGGGCCAAGGAAGGCCGGCCACX_XX_X
14._GC-08-065-1-87
CCGGGGCCAAGGAAGGCCGGCCACX_XX_X
15._GC-08-065-1-87
CCGGGGCCAAGGAAGGCCGGCCACX_XX_X
16._GC-08-065-1-87
CCGGGGCCAAGGAAGGCCGGCCACX_XX_X
17._GC-08-065-1-87
CCGGGGCCAAGGAAGGCCGGCCACX_XX_X
18._GC-08-065-1-87
CCGGGGCCAAGGAAGGCCGGCCACX_XX_X
19._GC-05-161-4-14
CCGGGGCCAAGGAAGGCCGG_ACX_XX_X
20._GC-08-065-1-87
CCGGGGCCAAGGAAGG_GGCCACX_XX_X
21._GC-08-065-1-87
CCGGGGCCAAGG_GGCCGGCCACX_XX_X
22._GC-08-065-1-87
CCGGGGCCAAGGAAGGCCGGCCACX_XX_X
23._GC-08-065-1-87
CCGGGGCCAAGGAAGG_GGCCACX_XX_X
24._RB_47_[BRA]
CCGG__AA_AA_CC_CCACX_XX_X
25._RB_47_[BRA]
CCGG__AA_AA_AC_CCACX_XX_X
26._RUQ_135
CCGGGG_AAGGAAGGCCGGCCACX_XX_X
27._RB_47_[BRA]
CCGG__AA_AAGGCC_CCACX_XX_X
28._RB_47_[BRA]
CCGG__AA_AAGGCC_CCACX_XX_X
29._RB_47_[BRA]
CCGG__AA_AAGGCC_CCACX_XX_X
30._RB_47_[BRA]
CCGG__AA_AAGGCC_CCACX_XX_X
31._RB_47_[BRA]
CCGG__AA_AAGGCC_CCACX_XX_X
32._RB_47_[BRA]
CCGG__AA_AAGGCC_CCACX_XX_X
33._RB_47_[BRA]
CCGG__AA_AAGGCC_CCACX_XX_X
34._RB_47_[BRA]
CCGG__AA_AAGGCC_CCACX_XX_X
35._RB_47_[BRA]
CCGG__AA_AAGGCC_CCACX_XX_X
36._RB_47_[BRA]
CCGG__AA_AAGGCC_CCACX_XX_X
37._RB_47_[BRA]
CCGG__AA_AAGGCC_CCACX_XX_X
38._RB_47_[BRA]
CCGG__AA_AAGGCC_CCACX_XX_X
39._RB_47_[BRA]
CCGG__AA_AAGGCC_CCACX_XX_X
40._RB_47_[BRA]
CCGG__AA_AAGGCC_CCACX_XX_X
41._RB_47_[BRA]
CCGG__AA_AAGGCC_CCACX_XX_X
42._RB_47_[BRA]
CCGG__AA_AAGGCC_CCACX_XX_X
43._RB_47_[BRA]
CCGG__AA_AAGGCC_CCACX_XX_X
44._RB_47_[BRA]
CCGG__AA_AAGGCC_CCACX_XX_X
45._RUQ_135
CCGG__AA_AAGGCC_CCACX_XX_X
46._RB_47_[BRA]
CCGG__AA__GGCC_CCACX_XX_X
47._RB_47_[BRA]
CCGG__AA_AAGGCC__ACX_XX_X
48._RB_47_[BRA]
CCGG__AA_AAGG__CCACX_XX_X
49._RB_47_[BRA]
CCGG__AA_AAGG__CCACX_XX_X
50._GC-05-101-3-3
CCGGCCGGAAGGAACCCCGGGGACX_XX_X

Input profile: RB_47_[BRA] RUQ_135

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

1._RB_47_[BRA] GC-08-065-1-87

85.4 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

2._RB_47_[BRA] GC-05-101-3-03

84.6 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

3._RB_47_[BRA] GC-05-101-3-03

84.6 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

4._RB_47_[BRA] GC-05-101-3-03

84.6 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

5._RB_47_[BRA] GC-05-101-3-03

84.6 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

6._RB_47_[BRA] GC-05-101-3-03

84.6 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

7._RB_47_[BRA] GC-05-161-4-14

84.6 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP3
 Mars, 2018

8._RB_47_[BRA] GC-05-161-4-14

84.6 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

9._RB_47_[BRA] GC-05-161-4-14

84.6 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

10._RB_47_[BRA] GC-05-161-4-14

84.6 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

11._RB_47_[BRA] GC-05-161-4-14

84.6 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

12._RB_47_[BRA] GC-08-065-1-87

84.6 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

13._RB_47_[BRA] GC-08-065-1-87

84.6 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

14._RB_47_[BRA] GC-08-065-1-87

84.6 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

15._RB_47_[BRA] GC-08-065-1-87

84.6 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

16._RB_47_[BRA] GC-08-065-1-87

84.6 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

17._RB_47_[BRA] GC-08-065-1-87

84.6 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

18._RB_47_[BRA] GC-08-065-1-87

84.6 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

19._RB_47_[BRA] GC-05-161-4-14

84 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

20._RB_47_[BRA] GC-08-065-1-87

84 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

21._RB_47_[BRA] GC-08-065-1-87

84 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

22._RB_47_[BRA] GC-08-065-1-87

84 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

23._RB_47_[BRA] GC-08-065-1-87

83.3 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

24._RB_47_[BRA]

81.8 %
11 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

25._RB_47_[BRA]

79.2 %
12 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8187 12
 Dapeng Zhang, 2016

26._RB_47_[BRA] RUQ_135

78.9 %
19 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

27._RB_47_[BRA]

76.9 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8187 11
 Dapeng Zhang, 2016

28._RB_47_[BRA]

76.9 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5303 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

29._RB_47_[BRA]

76.9 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5303 3
 Dapeng Zhang, 2016

30._RB_47_[BRA]

76.9 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5303 4
 Dapeng Zhang, 2016

31._RB_47_[BRA]

76.9 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5303 5
 Dapeng Zhang, 2016

32._RB_47_[BRA]

76.9 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5303 2 > FP
 Dapeng Zhang, 2016

33._RB_47_[BRA]

76.9 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5414 2
 Dapeng Zhang, 2016

34._RB_47_[BRA]

76.9 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5414 3
 Dapeng Zhang, 2016

35._RB_47_[BRA]

76.9 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5414 4
 Dapeng Zhang, 2016

36._RB_47_[BRA]

76.9 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5414 5
 Dapeng Zhang, 2016

37._RB_47_[BRA]

76.9 %
13 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5414 1 > FP
 Dapeng Zhang, 2016

38._RB_47_[BRA]

76.9 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8187 3
 Dapeng Zhang, 2016

39._RB_47_[BRA]

76.9 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8187 4
 Dapeng Zhang, 2016

40._RB_47_[BRA]

76.9 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8187 5
 Dapeng Zhang, 2016

41._RB_47_[BRA]

76.9 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8187 6
 Dapeng Zhang, 2016

42._RB_47_[BRA]

76.9 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8187 7
 Dapeng Zhang, 2016

43._RB_47_[BRA]

76.9 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8187 8
 Dapeng Zhang, 2016

44._RB_47_[BRA]

76.9 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8187 9
 Dapeng Zhang, 2016

45._RB_47_[BRA] RUQ_135

76.9 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

46._RB_47_[BRA]

75 %
12 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8187 10
 Dapeng Zhang, 2016

47._RB_47_[BRA]

75 %
12 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5414 2
 Dapeng Zhang, 2016

48._RB_47_[BRA]

75 %
12 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8187 1
 Dapeng Zhang, 2016

49._RB_47_[BRA]

75 %
12 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8187 2
 Dapeng Zhang, 2016

50._RB_47_[BRA] GC-05-101-3-3

57.1 %
21 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 3, Rep: 3, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1458 2TcSNP1439 3TcSNP1126 4TcSNP1111 5TcSNP1060
6TcSNP1041 7TcSNP994 8TcSNP891 9TcSNP878 10TcSNP872
11TcSNP860 12TcSNP751 13TcSNP606 14TcSNP602 15TcSNP591
16TcSNP577 17TcSNP448 18TcSNP413 19TcSNP372 20TcSNP364
21TcSNP230 22TcSNP226 23TcSNP193 24TcSNP174 25TcSNP151
26TcSNP144