SNP Profiles of ICS 43   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
ATCTGGGGGGTTGGGTACTTCTTTAACC
1._RUQ_144
____GG________GT____________
2._ICS_43
____GG________GT____CT__AA__
3._RUQ_144
____GG________GT____CT______
4._ICS43
____CC______________________
5._RUQ_144
____CC________AA________AA__
6._ICS_43_Fld#_164_Plt#_1
____CC________AA________AA__
7._GC-01-051-3-06
____CC________TT____CC__GG__
8._GC-01-051-3-06
____CC________TT____CC__GG__
9._GC-01-051-3-06
____CC________TT____CC__GG__
10._GC-01-051-3-06
____CC________TT____CC__GG__
11._GC-01-051-3-06
____CC________TT____CC__GG__
12._GC-01-051-3-06
____CC________TT____CC__GG__
13._GC-01-051-3-06
____CC________TT____CC__GG__
14._GC-01-051-3-06
____CC________TT____CC__GG__
15._GC-01-051-3-06
____CC________TT____CC__GG__
16._GC-01-051-3-06
____CC________TT____CC__GG__
17._ICS_43
____CC________TT____CC__GG__
18._ICS_43
____CC________TT____CC__GG__
19._ICS_43
____CC________TT____CC__GG__
20._ICS_43
____CC________TT____CC__GG__
21._ICS_43
____CC________TT____CC__GG__
22._ICS_43
____CC________TT____CC__GG__
23._ICS_43
____CC________TT____CC__GG__
24._ICS_43
____CC________TT____CC__GG__
25._ICS_43
____CC________TT____CC__GG__
26._ICS_43
____CC________TT____CC__GG__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ATCTCTAACGGGGGTTAACCCTCTAGGT
1._RUQ_144
______AA____GG____CC____AGGT
2._ICS_43
______AA____GG____________GT
3._RUQ_144
______AA____GG____________GT
4._ICS43
____________CC______________
5._RUQ_144
______AA__GGCCCC__CC____AGAC
6._ICS_43_Fld#_164_Plt#_1
______AA__GGCCCC__CC____AGAC
7._GC-01-051-3-06
____CCGG__GGGGGG__AA____AAGG
8._GC-01-051-3-06
____CCGG__GGGGGG__AA____AAGG
9._GC-01-051-3-06
____CCGG__GGGGGG__AA____AAGG
10._GC-01-051-3-06
____CCGG__GGGGGG__AA____AAGG
11._GC-01-051-3-06
____CCGG__GGGGGG__AA____AAGG
12._GC-01-051-3-06
____CCGG__GGGGGG__AA____AAGG
13._GC-01-051-3-06
____CCGG__GGGGGG__AA____AAGG
14._GC-01-051-3-06
____CCGG__GGGGGG__AA____AAGG
15._GC-01-051-3-06
______GG__GGGGGG__AA____AAGG
16._GC-01-051-3-06
____CCGG__GGGGGG__AA____AAGG
17._ICS_43
______GG____GG____________GG
18._ICS_43
______GG____GG____________GG
19._ICS_43
______GG____GG____________GG
20._ICS_43
______GG____GG____________GG
21._ICS_43
______GG____GG____________GG
22._ICS_43
______GG____GG____________GG
23._ICS_43
______GG____GG____________GG
24._ICS_43
______GG____GG____________GG
25._ICS_43
______GG____GG____________GG
26._ICS_43
______GG____GG____________GG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCCGAGCGAGTTCTAAATCCAGCCCTCC
1._RUQ_144
CC__________CTAA__CC__CC____
2._ICS_43
____AG________AA__CC__CC____
3._RUQ_144
____AG________AA__CC__CC____
4._ICS43
____________CTAA__CC________
5._RUQ_144
____________AGAA__CC__CC____
6._ICS_43_Fld#_164_Plt#_1
____________AGAA__CC__CC____
7._GC-01-051-3-06
CC__AA______CCCC__CC__AA____
8._GC-01-051-3-06
CC__AA______CCCC__CC__AA____
9._GC-01-051-3-06
CC__AA______CCCC__CC__AA____
10._GC-01-051-3-06
CC__AA______CCCC__CC__AA____
11._GC-01-051-3-06
CC__AA______CCCC__CC__AA____
12._GC-01-051-3-06
CC__AA______CCCC__CC__AA____
13._GC-01-051-3-06
CC__AA______CCCC__CC__AA____
14._GC-01-051-3-06
CC__AA______CCCC__CC__AA____
15._GC-01-051-3-06
CC__AA______CCCC__CC__AA____
16._GC-01-051-3-06
CC__AA______CCCC__CC__AA____
17._ICS_43
____AA________CC__CC__AA____
18._ICS_43
____AA________CC__CC__AA____
19._ICS_43
____AA________CC__CC__AA____
20._ICS_43
____AA________CC__CC__AA____
21._ICS_43
____AA________CC__CC__AA____
22._ICS_43
____AA________CC__CC__AA____
23._ICS_43
____AA________CC__CC__AA____
24._ICS_43
____AA________CC__CC__AA____
25._ICS_43
____AA________CC__CC__AA____
26._ICS_43
____AA________CC__CC__AA____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CCACAGAATTGGTTAGCTACATGTGGCC
1._RUQ_144
____AG____GG______AC________
2._ICS_43
__________GG______AC________
3._RUQ_144
__________GG______AC________
4._ICS43
__________GG______AC________
5._RUQ_144
____AG____GG______AC________
6._ICS_43_Fld#_164_Plt#_1
____AG____GG______AC________
7._GC-01-051-3-06
____GG____GG______AA________
8._GC-01-051-3-06
____GG____GG______AA________
9._GC-01-051-3-06
____GG____GG______AA________
10._GC-01-051-3-06
____GG____GG______AA________
11._GC-01-051-3-06
____GG____GG______AA________
12._GC-01-051-3-06
____GG____GG______AA________
13._GC-01-051-3-06
____GG____GG______AA________
14._GC-01-051-3-06
____GG____GG______AA________
15._GC-01-051-3-06
____GG____GG______AA________
16._GC-01-051-3-06
____GG____________AA________
17._ICS_43
__________GG______AA________
18._ICS_43
__________GG______AA________
19._ICS_43
__________GG______AA________
20._ICS_43
__________GG______AA________
21._ICS_43
__________GG______AA________
22._ICS_43
__________GG______AA________
23._ICS_43
__________GG______AA________
24._ICS_43
__________GG______AA________
25._ICS_43
__________GG______AA________
26._ICS_43
__________________AA________
 57 58 59            
_Input profile
CTACTTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._RUQ_144
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._ICS_43
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._RUQ_144
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._ICS43
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._RUQ_144
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._ICS_43_Fld#_164_Plt#_1
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._GC-01-051-3-06
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._GC-01-051-3-06
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._GC-01-051-3-06
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._GC-01-051-3-06
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._GC-01-051-3-06
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._GC-01-051-3-06
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._GC-01-051-3-06
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._GC-01-051-3-06
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._GC-01-051-3-06
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._GC-01-051-3-06
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._ICS_43
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._ICS_43
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._ICS_43
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._ICS_43
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._ICS_43
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._ICS_43
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._ICS_43
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._ICS_43
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._ICS_43
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
26._ICS_43
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: ICS_43 RUQ_144

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

1._ICS_43 RUQ_144

identical
15 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._ICS_43

identical
13 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block3
 Dapeng Zhang, 2016

3._ICS_43 RUQ_144

identical
12 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

4._ICS_43 ICS43

71.4 %
7 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

5._ICS_43 RUQ_144

64.7 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

6._ICS_43 ICS_43_Fld#_164_Plt#_1

64.7 %
17 shared markers

USDA-TARS, United States of America
Location: Field: 164, Tree: 1
 Mars, 2018

7._ICS_43 GC-01-051-3-06

45.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

8._ICS_43 GC-01-051-3-06

45.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

9._ICS_43 GC-01-051-3-06

45.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

10._ICS_43 GC-01-051-3-06

45.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

11._ICS_43 GC-01-051-3-06

45.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

12._ICS_43 GC-01-051-3-06

45.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

13._ICS_43 GC-01-051-3-06

45.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

14._ICS_43 GC-01-051-3-06

45.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

15._ICS_43 GC-01-051-3-06

45 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

16._ICS_43 GC-01-051-3-06

42.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

17._ICS_43

42.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 1
 Dapeng Zhang, 2016

18._ICS_43

42.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 2
 Dapeng Zhang, 2016

19._ICS_43

42.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 2
 Dapeng Zhang, 2016

20._ICS_43

42.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 4
 Dapeng Zhang, 2016

21._ICS_43

42.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 12
 Dapeng Zhang, 2016

22._ICS_43

42.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 14
 Dapeng Zhang, 2016

23._ICS_43

42.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 15
 Dapeng Zhang, 2016

24._ICS_43

42.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 8 > FP
 Dapeng Zhang, 2016

25._ICS_43

42.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 9 > FP
 Dapeng Zhang, 2016

26._ICS_43

37.5 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 3
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1527 2TcSNP1524 3TcSNP1458 4TcSNP1404 5TcSNP1401
6TcSNP1293 7TcSNP1275 8TcSNP1253 9TcSNP1230 10TcSNP1205
11TcSNP1144 12TcSNP1112 13TcSNP1062 14TcSNP1053 15TcSNP1019
16TcSNP1010 17TcSNP999 18TcSNP998 19TcSNP945 20TcSNP899
21TcSNP872 22TcSNP836 23TcSNP835 24TcSNP823 25TcSNP800
26TcSNP739 27TcSNP731 28TcSNP723 29TcSNP702 30TcSNP660
31TcSNP645 32TcSNP644 33TcSNP642 34TcSNP640 35TcSNP602
36TcSNP591 37TcSNP589 38TcSNP577 39TcSNP546 40TcSNP529
41TcSNP522 42TcSNP519 43TcSNP421 44TcSNP363 45TcSNP329
46TcSNP305 47TcSNP290 48TcSNP230 49TcSNP194 50TcSNP189
51TcSNP176 52TcSNP144 53TcSNP143 54TcSNP131 55TcSNP52
56TcSNP49 57TcSNP33 58TcSNP19 59TcSNP13