SNP Profiles of ICS 48 View Data

Show/Hide Profiles

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AT	CT	CG	GG	GG	TT	GG	GT	AC	GT	CT	TT	AA	CC
1._ICS_48	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
2._RUQ_146	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
3._ICS_48	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
4._ICS_48	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
5._ICS_48	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
6._ICS_48	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
7._ICS_48	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
8._ICS_48	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
9._ICS_48	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
10._ICS_48	__	__	GG	__	__	__	__	GT	__	__	CT	__	AA	__
11._ICS_48	__	__	GG	__	__	__	__	GT	__	__	__	__	AA	__
12._RUQ_146	__	__	CG	__	__	__	__	GT	__	__	__	__	__	__
13._GC-05-120-3-22	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
14._GC-05-120-3-22	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
15._GC-05-120-3-22	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
16._GC-05-120-3-22	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
17._GC-05-078-2-29	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
18._GC-05-078-2-29	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
19._GC-05-078-2-29	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
20._GC-05-078-2-29	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
21._RUQ_146	__	__	CC	__	__	__	__	AA	__	__	__	__	AA	__
22._ICS_48	__	__	GG	__	__	__	__	TT	__	__	TT	__	AA	__
23._GC-05-078-2-29	__	__	GG	__	__	__	__	TT	__	__	TT	__	AA	__
24._ICS_48_Fld#_105_Plt#_2	__	__	CG	__	__	__	__	AC	__	__	__	__	AG	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AT	CT	CC	AA	CG	GG	CG	TT	AA	AC	CT	CT	AG	TT
1._ICS_48	__	__	__	AA	__	__	CG	__	__	__	__	__	__	TT
2._RUQ_146	__	__	__	AA	__	__	CG	__	__	__	__	__	__	TT
3._ICS_48	__	__	__	AA	__	__	CG	__	__	__	__	__	__	TT
4._ICS_48	__	__	__	AA	__	__	CG	__	__	__	__	__	__	TT
5._ICS_48	__	__	__	AA	__	__	CG	__	__	__	__	__	__	TT
6._ICS_48	__	__	__	AA	__	__	CG	__	__	__	__	__	__	TT
7._ICS_48	__	__	__	AA	__	__	CG	__	__	__	__	__	__	TT
8._ICS_48	__	__	__	AA	__	__	CG	__	__	__	__	__	__	TT
9._ICS_48	__	__	__	AA	__	__	CG	__	__	__	__	__	__	TT
10._ICS_48	__	__	__	AA	__	__	CG	__	__	__	__	__	__	TT
11._ICS_48	__	__	__	AA	__	__	CG	__	__	__	__	__	__	TT
12._RUQ_146	__	__	CC	AA	__	GG	CG	__	__	AC	__	__	AG	TT
13._GC-05-120-3-22	__	__	CC	AA	__	GG	CG	GG	__	AC	__	__	AG	TT
14._GC-05-120-3-22	__	__	CC	AA	__	GG	CG	GG	__	AC	__	__	AG	TT
15._GC-05-120-3-22	__	__	CC	AA	__	GG	CG	GG	__	AC	__	__	AG	TT
16._GC-05-120-3-22	__	__	CC	AA	__	GG	CG	GG	__	AC	__	__	AG	TT
17._GC-05-078-2-29	__	__	CC	AA	__	GG	CG	GG	__	AC	__	__	AG	TT
18._GC-05-078-2-29	__	__	CC	AA	__	GG	CG	GG	__	AC	__	__	AG	TT
19._GC-05-078-2-29	__	__	CC	AA	__	GG	CG	GG	__	AC	__	__	AG	TT
20._GC-05-078-2-29	__	__	CC	AA	__	GG	CG	GG	__	AC	__	__	AG	TT
21._RUQ_146	__	__	__	AA	__	GG	CG	CC	__	AC	__	__	AG	AA
22._ICS_48	__	__	__	AA	__	__	GG	__	__	__	__	__	__	GT
23._GC-05-078-2-29	__	__	TT	AA	__	AG	GG	GG	__	CC	__	__	GG	GT
24._ICS_48_Fld#_105_Plt#_2	__	__	__	AG	__	AA	CC	CG	__	AC	__	__	AG	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CC	CG	AG	CG	AG	TT	CC	AC	AT	CG	AG	CC	CT	AC
1._ICS_48	__	__	AG	__	__	__	__	AC	__	CG	__	CC	__	__
2._RUQ_146	__	__	AG	__	__	__	__	AC	__	CG	__	CC	__	__
3._ICS_48	__	__	__	__	__	__	__	AC	__	CG	__	CC	__	__
4._ICS_48	__	__	__	__	__	__	__	AC	__	CG	__	CC	__	__
5._ICS_48	__	__	__	__	__	__	__	AC	__	CG	__	CC	__	__
6._ICS_48	__	__	__	__	__	__	__	AC	__	CG	__	CC	__	__
7._ICS_48	__	__	__	__	__	__	__	AC	__	CG	__	CC	__	__
8._ICS_48	__	__	__	__	__	__	__	AC	__	CG	__	CC	__	__
9._ICS_48	__	__	__	__	__	__	__	AC	__	CG	__	CC	__	__
10._ICS_48	__	__	AG	__	__	__	__	AC	__	CG	__	CC	__	__
11._ICS_48	__	__	AG	__	__	__	__	AC	__	CG	__	CC	__	__
12._RUQ_146	CC	__	__	__	__	__	CC	AA	__	GG	__	CC	__	__
13._GC-05-120-3-22	CT	__	AG	__	__	__	CC	AC	__	CG	__	CC	__	__
14._GC-05-120-3-22	CT	__	__	__	__	__	CC	AC	__	CG	__	CC	__	__
15._GC-05-120-3-22	CT	__	__	__	__	__	CC	AC	__	CG	__	CC	__	__
16._GC-05-120-3-22	CT	__	__	__	__	__	CC	AC	__	CG	__	CC	__	__
17._GC-05-078-2-29	CT	__	__	__	__	__	CC	AC	__	CG	__	CC	__	__
18._GC-05-078-2-29	CT	__	__	__	__	__	CC	AC	__	CG	__	CC	__	__
19._GC-05-078-2-29	CT	__	__	__	__	__	CC	AC	__	CG	__	CC	__	__
20._GC-05-078-2-29	CT	__	__	__	__	__	CC	AC	__	CG	__	CC	__	__
21._RUQ_146	__	__	__	__	__	__	GG	AC	__	CG	__	CC	__	__
22._ICS_48	__	__	GG	__	__	__	__	CC	__	CG	__	CC	__	__
23._GC-05-078-2-29	CC	__	GG	__	__	__	TT	CC	__	CG	__	CC	__	__
24._ICS_48_Fld#_105_Plt#_2	__	__	__	__	__	__	AG	AC	__	CC	__	AC	__	__

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	CC	AC	AG	AC	TT	AG	GT	AA	CT	AC	AT	GT	GG	CC
1._ICS_48	__	__	__	__	__	AG	__	__	__	AC	__	__	__	__
2._RUQ_146	__	__	__	__	__	AG	__	__	__	AC	__	__	__	__
3._ICS_48	__	__	__	__	__	AG	__	__	__	AC	__	__	__	__
4._ICS_48	__	__	__	__	__	AG	__	__	__	AC	__	__	__	__
5._ICS_48	__	__	__	__	__	AG	__	__	__	AC	__	__	__	__
6._ICS_48	__	__	__	__	__	AG	__	__	__	AC	__	__	__	__
7._ICS_48	__	__	__	__	__	AG	__	__	__	AC	__	__	__	__
8._ICS_48	__	__	__	__	__	AG	__	__	__	AC	__	__	__	__
9._ICS_48	__	__	__	__	__	AG	__	__	__	AC	__	__	__	__
10._ICS_48	__	__	__	__	__	AG	__	__	__	AC	__	__	__	__
11._ICS_48	__	__	__	__	__	AG	__	__	__	AC	__	__	__	__
12._RUQ_146	__	__	AG	__	__	AG	__	__	__	AC	__	__	__	__
13._GC-05-120-3-22	__	__	AG	__	__	AG	__	__	__	AC	__	__	__	__
14._GC-05-120-3-22	__	__	AG	__	__	AG	__	__	__	AC	__	__	__	__
15._GC-05-120-3-22	__	__	AG	__	__	AG	__	__	__	AC	__	__	__	__
16._GC-05-120-3-22	__	__	AG	__	__	AG	__	__	__	AC	__	__	__	__
17._GC-05-078-2-29	__	__	AG	__	__	AG	__	__	__	AC	__	__	__	__
18._GC-05-078-2-29	__	__	AG	__	__	AG	__	__	__	AC	__	__	__	__
19._GC-05-078-2-29	__	__	AG	__	__	AG	__	__	__	AC	__	__	__	__
20._GC-05-078-2-29	__	__	AG	__	__	AG	__	__	__	AC	__	__	__	__
21._RUQ_146	__	__	AG	__	__	AG	__	__	__	AC	__	__	__	__
22._ICS_48	__	__	__	__	__	AG	__	__	__	CC	__	__	__	__
23._GC-05-078-2-29	__	__	GG	__	__	AG	__	__	__	CC	__	__	__	__
24._ICS_48_Fld#_105_Plt#_2	__	__	GG	__	__	AA	__	__	__	CC	__	__	__	__

	57	58	59
_Input profile	CT	AC	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._ICS_48	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._RUQ_146	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._ICS_48	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._ICS_48	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._ICS_48	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._ICS_48	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._ICS_48	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._ICS_48	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._ICS_48	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._ICS_48	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._ICS_48	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._RUQ_146	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._GC-05-120-3-22	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._GC-05-120-3-22	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._GC-05-120-3-22	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
16._GC-05-120-3-22	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
17._GC-05-078-2-29	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
18._GC-05-078-2-29	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
19._GC-05-078-2-29	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
20._GC-05-078-2-29	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
21._RUQ_146	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
22._ICS_48	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
23._GC-05-078-2-29	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
24._ICS_48_Fld#_105_Plt#_2	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: ICS_48 RUQ_146

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

1._ICS_48

identical
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5322 3 > FP

Dapeng Zhang, 2016

2._ICS_48 RUQ_146

identical
13 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

3._ICS_48

identical
12 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5229 3

Dapeng Zhang, 2016

4._ICS_48

identical
12 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5229 4

Dapeng Zhang, 2016

5._ICS_48

identical
12 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5229 5

Dapeng Zhang, 2016

6._ICS_48

identical
12 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5229 1 > FP

Dapeng Zhang, 2016

7._ICS_48

identical
12 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5322 1

Dapeng Zhang, 2016

8._ICS_48

identical
12 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5322 4

Dapeng Zhang, 2016

9._ICS_48

identical
12 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5322 2 > FP

Dapeng Zhang, 2016

10._ICS_48

96.2 %
13 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: San Juan Block3

Dapeng Zhang, 2016

11._ICS_48

95.8 %
12 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B E318 T6

Dapeng Zhang, 2016

12._ICS_48 RUQ_146

94.1 %
17 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

13._ICS_48 GC-05-120-3-22

92.9 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP4

14._ICS_48 GC-05-120-3-22

92.5 %
20 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

15._ICS_48 GC-05-120-3-22

92.5 %
20 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP3

16._ICS_48 GC-05-120-3-22

92.5 %
20 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

17._ICS_48 GC-05-078-2-29

92.5 %
20 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

18._ICS_48 GC-05-078-2-29

92.5 %
20 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

19._ICS_48 GC-05-078-2-29

92.5 %
20 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

20._ICS_48 GC-05-078-2-29

92.5 %
20 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

21._ICS_48 RUQ_146

73.5 %
17 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

22._ICS_48

69.2 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5229 2 > FP

Dapeng Zhang, 2016

23._ICS_48 GC-05-078-2-29

57.1 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

24._ICS_48 ICS_48_Fld#_105_Plt#_2

47.1 %
17 shared markers

View View all Clone Any

USDA-TARS, United States of America

Location: Field: 105, Tree: 2

Key to SNP Markers

Key to SNP Markers

1	TcSNP1527	2	TcSNP1524	3	TcSNP1458	4	TcSNP1404	5	TcSNP1401
6	TcSNP1293	7	TcSNP1275	8	TcSNP1253	9	TcSNP1230	10	TcSNP1205
11	TcSNP1144	12	TcSNP1112	13	TcSNP1062	14	TcSNP1053	15	TcSNP1019
16	TcSNP1010	17	TcSNP999	18	TcSNP998	19	TcSNP945	20	TcSNP899
21	TcSNP872	22	TcSNP836	23	TcSNP835	24	TcSNP823	25	TcSNP800
26	TcSNP739	27	TcSNP731	28	TcSNP723	29	TcSNP702	30	TcSNP660
31	TcSNP645	32	TcSNP644	33	TcSNP642	34	TcSNP640	35	TcSNP602
36	TcSNP591	37	TcSNP589	38	TcSNP577	39	TcSNP546	40	TcSNP529
41	TcSNP522	42	TcSNP519	43	TcSNP421	44	TcSNP363	45	TcSNP329
46	TcSNP305	47	TcSNP290	48	TcSNP230	49	TcSNP194	50	TcSNP189
51	TcSNP176	52	TcSNP144	53	TcSNP143	54	TcSNP131	55	TcSNP52
56	TcSNP49	57	TcSNP33	58	TcSNP19	59	TcSNP13