SNP Profiles of SC 9 [UNK] View Data

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_Input profile	AG	CC	AA	CC	CC	AA	CG	GG	CC	TT	AA	CC	TT	CC
1._AMAZ_5_/2___	__	__	__	__	CC	AA	__	GG	CC	__	__	CC	__	__
2._AMAZ_5_/2___	AG	__	__	__	__	AA	__	__	CC	__	__	__	__	__
3._AMAZ_5_/2___	AG	__	__	__	__	AA	__	__	CC	__	__	__	__	__
4._AMAZ_5_/2___	AG	__	__	__	__	AA	__	__	CC	__	__	__	__	__
5._AMAZ_5_/2___	AG	__	__	__	__	AA	__	__	CC	__	__	__	__	__
6._AMAZ_5_/2___	AG	__	__	__	__	AA	__	__	CC	__	__	__	__	__
7._AMAZ_5_/2___	AG	__	__	__	CC	AA	__	GG	CC	CC	__	CC	__	__
8._AMAZ_5_/2___	AG	__	__	__	CC	AA	__	GG	CC	CC	__	CC	__	__
9._AMAZ_5_/2___	AG	__	__	__	CC	AA	__	GG	CC	CC	__	CC	__	__
10._AMAZ_5_/2___	AG	__	__	__	CC	AA	__	GG	CC	CC	__	CC	__	__
11._AMAZ_5_/2___	AA	__	__	__	__	GG	__	__	GG	__	__	__	__	__

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_Input profile	AA	GG	TT	CG	AA	CC	GG	TT	CT	AA	TT	GG	AA	CC
1._AMAZ_5_/2___	AA	GG	TT	__	__	__	__	__	CT	AA	__	GG	__	CC
2._AMAZ_5_/2___	__	GG	__	__	AA	__	__	__	__	AA	__	GG	__	CC
3._AMAZ_5_/2___	__	GG	__	__	AA	__	__	__	__	AA	__	GG	__	CC
4._AMAZ_5_/2___	__	GG	__	__	AA	__	__	__	__	AA	__	GG	__	CC
5._AMAZ_5_/2___	__	GG	__	__	AA	__	__	__	__	AA	__	GG	__	CC
6._AMAZ_5_/2___	__	GG	__	__	AA	__	__	__	__	AA	__	GG	__	CC
7._AMAZ_5_/2___	AA	GG	TT	__	AA	__	__	__	CT	AA	__	GG	__	CC
8._AMAZ_5_/2___	AA	GG	TT	__	AA	__	__	__	CT	AA	__	GG	__	CC
9._AMAZ_5_/2___	AA	GG	TT	__	AA	__	__	__	CT	AA	__	GG	__	CC
10._AMAZ_5_/2___	AA	GG	TT	__	AA	__	__	__	CT	AA	__	GG	__	CC
11._AMAZ_5_/2___	__	GG	__	__	AA	__	__	__	__	AA	__	CC	__	CC

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_Input profile	CC	AA	CC	AC	GG	AA	TT	AA	GT	GG	TT	AA	AA	TT
1._AMAZ_5_/2___	__	__	__	__	GG	__	__	AA	__	__	__	AA	__	__
2._AMAZ_5_/2___	__	__	__	__	__	__	__	AA	__	__	__	AA	__	__
3._AMAZ_5_/2___	__	__	__	__	__	__	__	AA	__	__	__	AA	__	__
4._AMAZ_5_/2___	__	__	__	__	__	__	__	AA	__	__	__	AA	__	__
5._AMAZ_5_/2___	__	__	__	__	__	__	__	AA	__	__	__	AA	__	__
6._AMAZ_5_/2___	__	__	__	__	__	__	__	AA	__	__	__	AA	__	__
7._AMAZ_5_/2___	__	__	__	__	GG	__	__	AA	__	__	__	AA	__	__
8._AMAZ_5_/2___	__	__	__	__	GG	__	__	AA	__	__	__	AA	__	__
9._AMAZ_5_/2___	__	__	__	__	GG	__	__	AA	__	__	__	AA	__	__
10._AMAZ_5_/2___	__	__	__	__	GG	__	__	AA	__	__	__	AA	__	__
11._AMAZ_5_/2___	__	__	__	__	__	__	__	AA	__	__	__	CC	__	__

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_Input profile	GG	CC	TT	AC	CT	AA	TT	CC	GG	GG	AT	GG	TT	AA
1._AMAZ_5_/2___	__	__	__	__	__	__	__	CC	__	__	__	__	TT	__
2._AMAZ_5_/2___	__	__	__	__	__	__	__	CC	__	__	__	__	TT	__
3._AMAZ_5_/2___	__	__	__	__	__	__	__	CC	__	__	__	__	TT	__
4._AMAZ_5_/2___	__	__	__	__	__	__	__	CC	__	__	__	__	TT	__
5._AMAZ_5_/2___	__	__	__	__	__	__	__	CC	__	__	__	__	TT	__
6._AMAZ_5_/2___	__	__	__	__	__	__	__	CC	__	__	__	__	TT	__
7._AMAZ_5_/2___	__	__	__	__	__	__	__	CC	__	__	__	__	TT	__
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9._AMAZ_5_/2___	__	__	__	__	__	__	__	CC	__	__	__	__	TT	__
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11._AMAZ_5_/2___	__	__	__	__	__	__	__	GG	__	__	__	__	TT	__

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_Input profile	GG	CC	CT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._AMAZ_5_/2___	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._AMAZ_5_/2___	__	CC	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._AMAZ_5_/2___	__	CC	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._AMAZ_5_/2___	__	CC	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._AMAZ_5_/2___	__	CC	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._AMAZ_5_/2___	__	CC	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._AMAZ_5_/2___	__	CC	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._AMAZ_5_/2___	__	CC	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._AMAZ_5_/2___	__	CC	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._AMAZ_5_/2___	__	CC	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._AMAZ_5_/2___	__	TT	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: AMAZ_5_/2 RUQ_93

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Cri
0.063 IMC
0.441 LCT
0.245 Nan
0.200

1._AMAZ_5_/2 RUQ_93

identical
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

2._AMAZ_5_/2

identical
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3108 9 > FP

Dapeng Zhang, 2016

3._AMAZ_5_/2

identical
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3108 8 > FP

Dapeng Zhang, 2016

4._AMAZ_5_/2

identical
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3108 5

Dapeng Zhang, 2016

5._AMAZ_5_/2

identical
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3108 2

Dapeng Zhang, 2016

6._AMAZ_5_/2 RUQ_93

identical
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

7._AMAZ_5_/2 GC-03-008-1-08

95.2 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

8._AMAZ_5_/2 GC-03-008-1-08

95.2 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

9._AMAZ_5_/2 GC-03-008-1-08

95.2 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8 > FP3

10._AMAZ_5_/2 GC-03-008-1-08

95.2 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9 > FP1

11._AMAZ_5_/2

50 %
13 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A A20 T1

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1062	2	TcSNP1053	3	TcSNP1019	4	TcSNP1010	5	TcSNP999
6	TcSNP998	7	TcSNP945	8	TcSNP899	9	TcSNP872	10	TcSNP836
11	TcSNP835	12	TcSNP823	13	TcSNP800	14	TcSNP739	15	TcSNP731
16	TcSNP723	17	TcSNP702	18	TcSNP660	19	TcSNP645	20	TcSNP644
21	TcSNP642	22	TcSNP640	23	TcSNP602	24	TcSNP591	25	TcSNP589
26	TcSNP577	27	TcSNP546	28	TcSNP529	29	TcSNP522	30	TcSNP519
31	TcSNP421	32	TcSNP363	33	TcSNP329	34	TcSNP305	35	TcSNP290
36	TcSNP230	37	TcSNP194	38	TcSNP189	39	TcSNP176	40	TcSNP144
41	TcSNP143	42	TcSNP131	43	TcSNP52	44	TcSNP49	45	TcSNP33
46	TcSNP19	47	TcSNP13	48	TcSNP1527	49	TcSNP1524	50	TcSNP1458
51	TcSNP1404	52	TcSNP1401	53	TcSNP1293	54	TcSNP1275	55	TcSNP1253
56	TcSNP1230	57	TcSNP1205	58	TcSNP1144	59	TcSNP1112