SNP Profiles of POUND 18   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
ACCCAACCAAGGAATTAGGGGGCTACAA
1._IMC_20___
AC________GG____AG______AC__
2._IMC_20___
AC________GG____AG______AC__
3._IMC_20___
AC________GG____AG______AC__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
TTGGCCTTCTATTTGGGGAGATGTGTAA
1._IMC_20___
______________GG________GT__
2._IMC_20___
______________CC________AA__
3._IMC_20___
______________CC________AA__
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GTCCCTGGCCAACCCCAACGGGCCTTAA
1._IMC_20___
______________CCAA____CC____
2._IMC_20___
______GG________AA__GGGGCG__
3._IMC_20___
______GG________AA__GGGGCG__
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CCTTCCGGGGTTCGAACCAGTTCTACAT
1._IMC_20___
CC____GGGGTT__________CTAC__
2._IMC_20___
CC____GGCC____________AGAC__
3._IMC_20___
CC____GGCC____________AGAC__
 57 58             
_Input profile
GGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._IMC_20___
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._IMC_20___
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._IMC_20___
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: IMC_20 RUQ_985

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

1._IMC_20 RUQ_985

96.9 %
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._IMC_20 RUQ_985

61.8 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

3._IMC_20 MITC-000417

61.8 %
17 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 


  Key to SNP Markers

1TcSNP529 2TcSNP522 3TcSNP519 4TcSNP421 5TcSNP363
6TcSNP329 7TcSNP305 8TcSNP290 9TcSNP230 10TcSNP194
11TcSNP189 12TcSNP176 13TcSNP144 14TcSNP143 15TcSNP131
16TcSNP52 17TcSNP49 18TcSNP33 19TcSNP13 20TcSNP1527
21TcSNP1524 22TcSNP1458 23TcSNP1404 24TcSNP1401 25TcSNP1293
26TcSNP1275 27TcSNP1253 28TcSNP1230 29TcSNP1205 30TcSNP1144
31TcSNP1112 32TcSNP1062 33TcSNP1053 34TcSNP1019 35TcSNP1010
36TcSNP999 37TcSNP998 38TcSNP945 39TcSNP899 40TcSNP872
41TcSNP836 42TcSNP835 43TcSNP823 44TcSNP800 45TcSNP739
46TcSNP731 47TcSNP723 48TcSNP702 49TcSNP660 50TcSNP645
51TcSNP644 52TcSNP642 53TcSNP640 54TcSNP602 55TcSNP591
56TcSNP589 57TcSNP577 58TcSNP546