SNP Profiles of B 12 /1 [POU] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	CG	GG	AA	TT	GG	GT	AA	GG	CC	CT	AG	CT	AA
1._B_12_/1_[POU]	__	CG	__	__	__	__	GT	__	__	CC	__	AG	__	__
2._B_12_/1_[POU]	__	CG	__	__	__	__	GT	__	__	CC	__	AG	__	__
3._B_12_/1_[POU]	__	CG	__	__	__	__	GT	__	__	CC	__	AG	__	__
4._B_12_/1_[POU]	__	CG	__	__	__	__	GT	__	__	CC	__	AG	__	__
5._B_12_/1_[POU]	__	CG	__	__	__	__	GT	__	__	CC	__	AG	__	__
6._RUQ_1541	__	CG	__	__	__	__	GT	__	__	CC	__	AG	__	__
7._B_12_/1_[POU]	__	CG	__	__	__	__	GT	__	__	CC	__	AG	__	__
8._RUQ_1541	__	CG	__	__	__	__	GT	__	__	__	__	__	__	__
9._GC-05-093-2-44	__	CG	__	__	__	__	GT	__	__	CC	__	AG	__	__
10._GC-05-093-2-44	__	CG	__	__	__	__	GT	__	__	CC	__	AG	__	__
11._GC-05-093-2-44	__	CG	__	__	__	__	GT	__	__	CC	__	AG	__	__
12._GC-05-093-2-44	__	CG	__	__	__	__	GT	__	__	CC	__	AG	__	__
13._GC-05-093-2-44	__	CG	__	__	__	__	GT	__	__	CC	__	AG	__	__
14._RUQ_1541	__	CG	__	__	__	__	AC	__	__	__	__	AG	__	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	CT	AG	CG	AG	GG	CT	AA	CC	TT	CT	AG	GT	TT
1._B_12_/1_[POU]	__	__	AG	__	__	GG	__	__	__	__	__	__	GT	__
2._B_12_/1_[POU]	__	__	AG	__	__	GG	__	__	__	__	__	__	GT	__
3._B_12_/1_[POU]	__	__	AG	__	__	GG	__	__	__	__	__	__	GT	__
4._B_12_/1_[POU]	__	__	AG	__	__	GG	__	__	__	__	__	__	GT	__
5._B_12_/1_[POU]	__	__	AG	__	__	GG	__	__	__	__	__	__	GT	__
6._RUQ_1541	__	__	AG	__	__	GG	__	__	__	__	__	__	GT	__
7._B_12_/1_[POU]	__	__	AG	__	__	GG	__	__	__	__	__	__	GT	__
8._RUQ_1541	__	CC	AG	__	__	GG	__	__	CC	__	__	AG	GT	TT
9._GC-05-093-2-44	__	CT	AG	__	AG	GG	CG	__	CC	__	__	AG	GT	TT
10._GC-05-093-2-44	__	CT	AG	__	AG	GG	CG	__	CC	__	__	AG	GT	TT
11._GC-05-093-2-44	__	CT	AG	__	AG	GG	CG	__	CC	__	__	AG	GT	TT
12._GC-05-093-2-44	__	CT	AG	__	AG	GG	CG	__	CC	__	__	AG	GT	TT
13._GC-05-093-2-44	__	CT	AG	__	AG	GG	CG	__	CC	__	__	AG	GT	TT
14._RUQ_1541	__	__	AG	__	AG	CC	CG	__	CC	__	__	AG	AC	__

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CG	AA	CC	AA	TT	CT	CC	AA	GG	AG	CC	CT	AC	CC
1._B_12_/1_[POU]	__	AA	__	__	__	__	CC	__	GG	__	CC	__	__	__
2._B_12_/1_[POU]	__	AA	__	__	__	__	CC	__	GG	__	CC	__	__	__
3._B_12_/1_[POU]	__	AA	__	__	__	__	CC	__	GG	__	CC	__	__	__
4._B_12_/1_[POU]	__	AA	__	__	__	__	CC	__	GG	__	CC	__	__	__
5._B_12_/1_[POU]	__	AA	__	__	__	__	CC	__	GG	__	CC	__	__	__
6._RUQ_1541	__	AA	__	__	__	__	CC	__	GG	__	CC	__	__	__
7._B_12_/1_[POU]	__	AA	__	__	__	__	CC	__	GG	__	CC	__	__	__
8._RUQ_1541	__	__	__	__	__	CT	CC	__	GG	__	CC	__	__	__
9._GC-05-093-2-44	__	AA	__	__	__	CT	CC	__	GG	__	CC	__	__	__
10._GC-05-093-2-44	__	AA	__	__	__	CT	CC	__	GG	__	CC	__	__	__
11._GC-05-093-2-44	__	AA	__	__	__	CT	CC	__	GG	__	CC	__	__	__
12._GC-05-093-2-44	__	AA	__	__	__	CT	CC	__	GG	__	CC	__	__	__
13._GC-05-093-2-44	__	AA	__	__	__	CT	CC	__	GG	__	CC	__	__	__
14._RUQ_1541	__	__	__	__	__	AG	CC	__	GG	__	CC	__	__	__

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	AC	GG	AA	CT	AA	TT	AG	TT	CC	AT	TT	GG	CC	TT
1._B_12_/1_[POU]	__	__	__	__	AA	__	__	__	CC	__	__	__	__	__
2._B_12_/1_[POU]	__	__	__	__	AA	__	__	__	CC	__	__	__	__	__
3._B_12_/1_[POU]	__	__	__	__	AA	__	__	__	CC	__	__	__	__	__
4._B_12_/1_[POU]	__	__	__	__	AA	__	__	__	CC	__	__	__	__	__
5._B_12_/1_[POU]	__	__	__	__	AA	__	__	__	CC	__	__	__	__	__
6._RUQ_1541	__	__	__	__	AA	__	__	__	CC	__	__	__	__	__
7._B_12_/1_[POU]	__	__	__	__	AA	__	__	__	CC	__	__	__	__	__
8._RUQ_1541	__	GG	__	__	AA	__	__	__	CC	__	__	__	__	__
9._GC-05-093-2-44	__	GG	__	__	AA	__	__	__	CC	__	__	__	__	__
10._GC-05-093-2-44	__	GG	__	__	AA	__	__	__	CC	__	__	__	__	__
11._GC-05-093-2-44	__	GG	__	__	AA	__	__	__	CC	__	__	__	__	__
12._GC-05-093-2-44	__	GG	__	__	AA	__	__	__	CC	__	__	__	__	__
13._GC-05-093-2-44	__	GG	__	__	AA	__	__	__	CC	__	__	__	__	__
14._RUQ_1541	__	GG	__	__	AA	__	__	__	CC	__	__	__	__	__

	57	58
_Input profile	AC	CT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._B_12_/1_[POU]	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._B_12_/1_[POU]	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._B_12_/1_[POU]	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._B_12_/1_[POU]	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._B_12_/1_[POU]	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._RUQ_1541	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._B_12_/1_[POU]	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._RUQ_1541	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._GC-05-093-2-44	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._GC-05-093-2-44	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._GC-05-093-2-44	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._GC-05-093-2-44	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._GC-05-093-2-44	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._RUQ_1541	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: B_12_/1_[POU] RUQ_1541

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Cri
0.099 Nac
0.592

1._B_12_/1_[POU]

identical
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5244 1 > FP

Dapeng Zhang, 2016

2._B_12_/1_[POU]

identical
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5244 5

Dapeng Zhang, 2016

3._B_12_/1_[POU]

identical
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5244 4

Dapeng Zhang, 2016

4._B_12_/1_[POU]

identical
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5244 3

Dapeng Zhang, 2016

5._B_12_/1_[POU]

identical
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5244 2

Dapeng Zhang, 2016

6._B_12_/1_[POU] RUQ_1541

identical
13 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

7._B_12_/1_[POU]

identical
13 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B F461 T10

Dapeng Zhang, 2016

8._B_12_/1_[POU] RUQ_1541

96.9 %
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

9._B_12_/1_[POU] GC-05-093-2-44

95.2 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

10._B_12_/1_[POU] GC-05-093-2-44

95.2 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

11._B_12_/1_[POU] GC-05-093-2-44

95.2 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

12._B_12_/1_[POU] GC-05-093-2-44

95.2 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

13._B_12_/1_[POU] GC-05-093-2-44

95.2 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

14._B_12_/1_[POU] RUQ_1541

70.6 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1524	2	TcSNP1458	3	TcSNP1404	4	TcSNP1401	5	TcSNP1293
6	TcSNP1275	7	TcSNP1253	8	TcSNP1230	9	TcSNP1205	10	TcSNP1144
11	TcSNP1112	12	TcSNP1062	13	TcSNP1053	14	TcSNP1019	15	TcSNP1010
16	TcSNP999	17	TcSNP998	18	TcSNP945	19	TcSNP899	20	TcSNP872
21	TcSNP836	22	TcSNP835	23	TcSNP823	24	TcSNP800	25	TcSNP739
26	TcSNP731	27	TcSNP723	28	TcSNP702	29	TcSNP660	30	TcSNP645
31	TcSNP644	32	TcSNP642	33	TcSNP640	34	TcSNP602	35	TcSNP591
36	TcSNP589	37	TcSNP577	38	TcSNP546	39	TcSNP529	40	TcSNP522
41	TcSNP519	42	TcSNP421	43	TcSNP363	44	TcSNP329	45	TcSNP305
46	TcSNP290	47	TcSNP230	48	TcSNP194	49	TcSNP189	50	TcSNP176
51	TcSNP144	52	TcSNP143	53	TcSNP131	54	TcSNP52	55	TcSNP49
56	TcSNP33	57	TcSNP19	58	TcSNP13