SNP Profiles of LP 1/41 [POU]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
ATTTCGGGAGTTGGTTACGGCCCTAGCC
1._RUQ_353
____CG________TT____________
2._RUQ_353
____CG________TT____CC__AG__
3._LP_1_/41_[POU]
____CG________TT____CC__AG__
4._LP_1_/41_[POU]
____CG________GT____TT__AG__
5._LP_1_/41_[POU]
____CG________GT____TT__AG__
6._LP_1_/41_[POU]
____CG________GT____TT__AG__
7._LP_1_/41_[POU]
____CG________GT____TT__AG__
8._LP_1_/41_[POU]
____CG________GT____TT__AG__
9._LP_1_/41_[POU]
____CG________GT____TT__AG__
10._LP_1_/41_[POU]
____CG________GT____TT__AG__
11._LP_1_/41_[POU]
____CG________GT____TT__AG__
12._LP_1_/41_[POU]
____CG________GT____TT__AG__
13._LP_1_/41_[POU]
____CG________GT____TT__AG__
14._RUQ_353
____CG________AA________AG__
15._GC-05-055-2-06
____CG________GT____TT__AG__
16._GC-05-148-4-01
____CG________GT____TT__AG__
17._GC-05-148-4-01
____CG________GT____TT__AG__
18._GC-05-148-4-01
____CG________GT____TT__AG__
19._GC-05-148-4-01
____CG________GT____TT__AG__
20._GC-05-148-4-01
____CG________GT____TT__AG__
21._GC-05-055-2-06
____CG________GT____TT__AG__
22._GC-05-055-2-06
____CG________GT____TT__AG__
23._GC-05-055-2-06
____CG________GT____TT__AG__
24._GC-05-055-2-06
____CG________GT____TT__AG__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AATTCCAACGGGGGCTAACCCCCCAGGG
1._RUQ_353
____CCAA____GG____CC____AGGG
2._RUQ_353
______AA____GG____________GG
3._LP_1_/41_[POU]
______AA____GG____________GG
4._LP_1_/41_[POU]
______AA____GG____________GG
5._LP_1_/41_[POU]
______AA____GG____________GG
6._LP_1_/41_[POU]
______AA____GG____________GG
7._LP_1_/41_[POU]
______AA____GG____________GG
8._LP_1_/41_[POU]
______AA____GG____________GG
9._LP_1_/41_[POU]
______AA____GG____________GG
10._LP_1_/41_[POU]
______AA____GG____________GG
11._LP_1_/41_[POU]
______AA____GG____________GG
12._LP_1_/41_[POU]
______AA____GG____________GG
13._LP_1_/41_[POU]
______AA____GG____________GG
14._RUQ_353
______AA__GGCCGG__CC____AGCC
15._GC-05-055-2-06
____CCAA____GGGG__AC____AGGG
16._GC-05-148-4-01
____CCAA__AGGGGG__AC____AGGG
17._GC-05-148-4-01
____CCAA__AGGGGG__AC____AGGG
18._GC-05-148-4-01
____CCAA__AGGGGG__AC____AGGG
19._GC-05-148-4-01
____CCAA__AGGGGG__AC____AGGG
20._GC-05-148-4-01
____CCAA__AGGGGG__AC____AGGG
21._GC-05-055-2-06
____CCAA__AGGGGG__AC____AGGG
22._GC-05-055-2-06
____CCAA__AGGGGG__AC____AGGG
23._GC-05-055-2-06
____CCAA__AGGGGG__AC____AGGG
24._GC-05-055-2-06
____CCAA__AGGGGG__AC____AGGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTCCAGCCAATTTTCCAAGGAACCCCAA
1._RUQ_353
TT__________TTCC__GG__CC____
2._RUQ_353
____AG________CC__GG__CC____
3._LP_1_/41_[POU]
____AG________CC__GG__CC____
4._LP_1_/41_[POU]
____AA________AC__GG__AC____
5._LP_1_/41_[POU]
____AA________AC__GG__AC____
6._LP_1_/41_[POU]
____AA________AC__GG__AC____
7._LP_1_/41_[POU]
____AA________AC__GG__AC____
8._LP_1_/41_[POU]
____AA________AC__GG__AC____
9._LP_1_/41_[POU]
____AA________AC__GG__AC____
10._LP_1_/41_[POU]
____AA________AC__GG__AC____
11._LP_1_/41_[POU]
____AA________AC__GG__AC____
12._LP_1_/41_[POU]
____AA________AC__GG__AC____
13._LP_1_/41_[POU]
____AA________AC__GG__AC____
14._RUQ_353
____________AACC__GG__CC____
15._GC-05-055-2-06
CT__AA______CTAC__GG__AC____
16._GC-05-148-4-01
CT__AA______CTAC__GG__AC____
17._GC-05-148-4-01
CT__AA______CTAC__GG__AC____
18._GC-05-148-4-01
CT__AA______CTAC__GG__AC____
19._GC-05-148-4-01
CT__AA______CTAC__GG__AC____
20._GC-05-148-4-01
CT__AA______CTAC__GG__AC____
21._GC-05-055-2-06
CT__AA______CTAC__GG__AC____
22._GC-05-055-2-06
CT__AA______CTAC__GG__AC____
23._GC-05-055-2-06
CT__AA______CTAC__GG__AC____
24._GC-05-055-2-06
CT__AA______CTAC__GG__AC____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CTCCGGAACTAAGTAATTCCAAGTGGCC
1._RUQ_353
____GG____AA______CC________
2._RUQ_353
__________AA______CC________
3._LP_1_/41_[POU]
__________AA______CC________
4._LP_1_/41_[POU]
__________AG______CC________
5._LP_1_/41_[POU]
__________AG______CC________
6._LP_1_/41_[POU]
__________AG______CC________
7._LP_1_/41_[POU]
__________AG______CC________
8._LP_1_/41_[POU]
__________AG______CC________
9._LP_1_/41_[POU]
__________AG______CC________
10._LP_1_/41_[POU]
__________AG______CC________
11._LP_1_/41_[POU]
__________AG______CC________
12._LP_1_/41_[POU]
__________AG______CC________
13._LP_1_/41_[POU]
__________AG______CC________
14._RUQ_353
____GG____AA______CC________
15._GC-05-055-2-06
____AG____AG______CC________
16._GC-05-148-4-01
____AG____AG______CC________
17._GC-05-148-4-01
____AG____AG______CC________
18._GC-05-148-4-01
____AG____AG______CC________
19._GC-05-148-4-01
____AG____AG______CC________
20._GC-05-148-4-01
____AG____AG______CC________
21._GC-05-055-2-06
____AG____AG______CC________
22._GC-05-055-2-06
____AG____AG______CC________
23._GC-05-055-2-06
____AG____AG______CC________
24._GC-05-055-2-06
____AG____AG______CC________
 57 58 59            
_Input profile
CTACCTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._RUQ_353
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._RUQ_353
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._LP_1_/41_[POU]
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._LP_1_/41_[POU]
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._LP_1_/41_[POU]
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._LP_1_/41_[POU]
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._LP_1_/41_[POU]
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._LP_1_/41_[POU]
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._LP_1_/41_[POU]
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._LP_1_/41_[POU]
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._LP_1_/41_[POU]
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._LP_1_/41_[POU]
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._LP_1_/41_[POU]
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._RUQ_353
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._GC-05-055-2-06
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._GC-05-148-4-01
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._GC-05-148-4-01
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._GC-05-148-4-01
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._GC-05-148-4-01
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._GC-05-148-4-01
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._GC-05-055-2-06
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._GC-05-055-2-06
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._GC-05-055-2-06
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._GC-05-055-2-06
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: LP_1_/41_[POU] RUQ_353

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

1._LP_1_/41_[POU] RUQ_353

identical
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._LP_1_/41_[POU] RUQ_353

identical
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

3._LP_1_/41_[POU]

identical
13 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper C796
 Dapeng Zhang, 2016

4._LP_1_/41_[POU]

73.1 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5401 2 > FP
 Dapeng Zhang, 2016

5._LP_1_/41_[POU]

73.1 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5206 2
 Dapeng Zhang, 2016

6._LP_1_/41_[POU]

73.1 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5206 4
 Dapeng Zhang, 2016

7._LP_1_/41_[POU]

73.1 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5206 5
 Dapeng Zhang, 2016

8._LP_1_/41_[POU]

73.1 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5206 1 > FP
 Dapeng Zhang, 2016

9._LP_1_/41_[POU]

73.1 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5206 3 > FP
 Dapeng Zhang, 2016

10._LP_1_/41_[POU]

73.1 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5401 3
 Dapeng Zhang, 2016

11._LP_1_/41_[POU]

73.1 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5401 4
 Dapeng Zhang, 2016

12._LP_1_/41_[POU]

73.1 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5401 5
 Dapeng Zhang, 2016

13._LP_1_/41_[POU]

73.1 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5401 1 > FP
 Dapeng Zhang, 2016

14._LP_1_/41_[POU] RUQ_353

70.6 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

15._LP_1_/41_[POU] GC-05-055-2-06

67.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

16._LP_1_/41_[POU] GC-05-148-4-01

66.7 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

17._LP_1_/41_[POU] GC-05-148-4-01

66.7 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

18._LP_1_/41_[POU] GC-05-148-4-01

66.7 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

19._LP_1_/41_[POU] GC-05-148-4-01

66.7 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP4
 Mars, 2018

20._LP_1_/41_[POU] GC-05-148-4-01

66.7 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP3
 Mars, 2018

21._LP_1_/41_[POU] GC-05-055-2-06

66.7 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

22._LP_1_/41_[POU] GC-05-055-2-06

66.7 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

23._LP_1_/41_[POU] GC-05-055-2-06

66.7 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

24._LP_1_/41_[POU] GC-05-055-2-06

66.7 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1527 2TcSNP1524 3TcSNP1458 4TcSNP1404 5TcSNP1401
6TcSNP1293 7TcSNP1275 8TcSNP1253 9TcSNP1230 10TcSNP1205
11TcSNP1144 12TcSNP1112 13TcSNP1062 14TcSNP1053 15TcSNP1019
16TcSNP1010 17TcSNP999 18TcSNP998 19TcSNP945 20TcSNP899
21TcSNP872 22TcSNP836 23TcSNP835 24TcSNP823 25TcSNP800
26TcSNP739 27TcSNP731 28TcSNP723 29TcSNP702 30TcSNP660
31TcSNP645 32TcSNP644 33TcSNP642 34TcSNP640 35TcSNP602
36TcSNP591 37TcSNP589 38TcSNP577 39TcSNP546 40TcSNP529
41TcSNP522 42TcSNP519 43TcSNP421 44TcSNP363 45TcSNP329
46TcSNP305 47TcSNP290 48TcSNP230 49TcSNP194 50TcSNP189
51TcSNP176 52TcSNP144 53TcSNP143 54TcSNP131 55TcSNP52
56TcSNP49 57TcSNP33 58TcSNP19 59TcSNP13