SNP Profiles of LV 20 [POU] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AT	TT	CG	GG	AG	TT	GT	GT	AA	TT	CT	CT	AG	CT
1._RUQ_354	__	__	CG	__	__	__	__	GT	__	__	__	__	__	__
2._RUQ_354	__	__	CG	__	__	__	__	GT	__	__	CT	__	AG	__
3._LV_20_[POU]	__	__	CG	__	__	__	__	GT	__	__	CT	__	AG	__
4._LV_20_[POU]	__	__	CG	__	__	__	__	GT	__	__	CT	__	AG	__
5._LV_20_[POU]	__	__	CG	__	__	__	__	GT	__	__	CT	__	AG	__
6._LV_20_[POU]	__	__	CG	__	__	__	__	GT	__	__	CT	__	AG	__
7._LV_20_[POU]	__	__	CG	__	__	__	__	GT	__	__	CT	__	AG	__
8._LV_20_[POU]	__	__	CG	__	__	__	__	GT	__	__	CT	__	AG	__
9._GC-04-027-2-09	__	__	CG	__	__	__	__	GT	__	__	CT	__	AG	__
10._GC-04-027-2-09	__	__	CG	__	__	__	__	GT	__	__	CT	__	AG	__
11._GC-04-027-2-09	__	__	CG	__	__	__	__	GT	__	__	CT	__	AG	__
12._GC-04-027-2-09	__	__	CG	__	__	__	__	GT	__	__	CT	__	AG	__
13._RUQ_354	__	__	CG	__	__	__	__	AC	__	__	__	__	AG	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	TT	TT	AG	CC	AG	GG	CT	AA	AC	TT	TT	AG	GT
1._RUQ_354	__	__	TT	AG	__	__	GG	__	__	AC	__	__	AG	GT
2._RUQ_354	__	__	__	AG	__	__	GG	__	__	__	__	__	__	GT
3._LV_20_[POU]	__	__	__	AG	__	__	GG	__	__	__	__	__	__	GT
4._LV_20_[POU]	__	__	__	AG	__	__	GG	__	__	__	__	__	__	GT
5._LV_20_[POU]	__	__	__	AG	__	__	GG	__	__	__	__	__	__	GT
6._LV_20_[POU]	__	__	__	AG	__	__	GG	__	__	__	__	__	__	GT
7._LV_20_[POU]	__	__	__	AG	__	__	GG	__	__	__	__	__	__	GT
8._LV_20_[POU]	__	__	__	AG	__	__	GG	__	__	__	__	__	__	GT
9._GC-04-027-2-09	__	__	TT	AG	__	AG	GG	GG	__	AC	__	__	AG	GT
10._GC-04-027-2-09	__	__	TT	AG	__	AG	GG	GG	__	AC	__	__	AG	GT
11._GC-04-027-2-09	__	__	TT	AG	__	AG	GG	GG	__	AC	__	__	AG	GT
12._GC-04-027-2-09	__	__	TT	AG	__	AG	GG	GG	__	AC	__	__	AG	GT
13._RUQ_354	__	__	__	AG	__	AG	CC	CC	__	AC	__	__	AG	AC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CC	CG	GG	CC	AA	CT	CT	CC	AA	CG	AA	CC	CT	AC
1._RUQ_354	CC	__	__	__	__	__	CT	CC	__	CG	__	CC	__	__
2._RUQ_354	__	__	GG	__	__	__	__	CC	__	CG	__	CC	__	__
3._LV_20_[POU]	__	__	GG	__	__	__	__	CC	__	CG	__	CC	__	__
4._LV_20_[POU]	__	__	GG	__	__	__	__	CC	__	CG	__	CC	__	__
5._LV_20_[POU]	__	__	AG	__	__	__	__	CC	__	CG	__	CC	__	__
6._LV_20_[POU]	__	__	AG	__	__	__	__	CC	__	CG	__	CC	__	__
7._LV_20_[POU]	__	__	AG	__	__	__	__	CC	__	CG	__	CC	__	__
8._LV_20_[POU]	__	__	AG	__	__	__	__	CC	__	CG	__	CC	__	__
9._GC-04-027-2-09	CT	__	AG	__	__	__	CT	CC	__	CG	__	CC	__	__
10._GC-04-027-2-09	CT	__	AG	__	__	__	CT	CC	__	CG	__	CC	__	__
11._GC-04-027-2-09	CT	__	AG	__	__	__	CT	CC	__	CG	__	CC	__	__
12._GC-04-027-2-09	CT	__	AG	__	__	__	CT	CC	__	CG	__	CC	__	__
13._RUQ_354	__	__	__	__	__	__	AG	CC	__	CG	__	CC	__	__

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	TT	GG	AA	CT	AA	TT	GG	CC	CC	TT	TT	GG	CC	CC
1._RUQ_354	__	GG	__	__	AA	__	__	__	CC	__	__	__	__	__
2._RUQ_354	__	__	__	__	AA	__	__	__	CC	__	__	__	__	__
3._LV_20_[POU]	__	__	__	__	AA	__	__	__	CC	__	__	__	__	__
4._LV_20_[POU]	__	__	__	__	AA	__	__	__	CC	__	__	__	__	__
5._LV_20_[POU]	__	__	__	__	AA	__	__	__	CC	__	__	__	__	__
6._LV_20_[POU]	__	__	__	__	AA	__	__	__	CC	__	__	__	__	__
7._LV_20_[POU]	__	__	__	__	AA	__	__	__	CC	__	__	__	__	__
8._LV_20_[POU]	__	__	__	__	AA	__	__	__	CC	__	__	__	__	__
9._GC-04-027-2-09	__	GG	__	__	AA	__	__	__	CC	__	__	__	__	__
10._GC-04-027-2-09	__	GG	__	__	AA	__	__	__	CC	__	__	__	__	__
11._GC-04-027-2-09	__	GG	__	__	AA	__	__	__	CC	__	__	__	__	__
12._GC-04-027-2-09	__	GG	__	__	AA	__	__	__	CC	__	__	__	__	__
13._RUQ_354	__	GG	__	__	AA	__	__	__	CC	__	__	__	__	__

	57	58
_Input profile	CC	CT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._RUQ_354	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._RUQ_354	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._LV_20_[POU]	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._LV_20_[POU]	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._LV_20_[POU]	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._LV_20_[POU]	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._LV_20_[POU]	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._LV_20_[POU]	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._GC-04-027-2-09	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._GC-04-027-2-09	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._GC-04-027-2-09	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._GC-04-027-2-09	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._RUQ_354	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: LV_20_[POU] RUQ_354

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

1._LV_20_[POU] RUQ_354

identical
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

2._LV_20_[POU] RUQ_354

identical
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

3._LV_20_[POU]

identical
13 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper C 562

Dapeng Zhang, 2016

4._LV_20_[POU]

identical
13 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper C 563

Dapeng Zhang, 2016

5._LV_20_[POU]

96.2 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4209 8 > FP

Dapeng Zhang, 2016

6._LV_20_[POU]

96.2 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4209 4 > FP

Dapeng Zhang, 2016

7._LV_20_[POU]

96.2 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4209 3

Dapeng Zhang, 2016

8._LV_20_[POU]

96.2 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4209 1

Dapeng Zhang, 2016

9._LV_20_[POU] GC-04-027-2-09

90.5 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

10._LV_20_[POU] GC-04-027-2-09

90.5 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

11._LV_20_[POU] GC-04-027-2-09

90.5 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP4

12._LV_20_[POU] GC-04-027-2-09

90.5 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8 > FP3

13._LV_20_[POU] RUQ_354

73.5 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1527	2	TcSNP1524	3	TcSNP1458	4	TcSNP1404	5	TcSNP1401
6	TcSNP1293	7	TcSNP1275	8	TcSNP1253	9	TcSNP1230	10	TcSNP1205
11	TcSNP1144	12	TcSNP1112	13	TcSNP1062	14	TcSNP1053	15	TcSNP1019
16	TcSNP1010	17	TcSNP999	18	TcSNP998	19	TcSNP945	20	TcSNP899
21	TcSNP872	22	TcSNP836	23	TcSNP835	24	TcSNP823	25	TcSNP800
26	TcSNP739	27	TcSNP731	28	TcSNP723	29	TcSNP702	30	TcSNP660
31	TcSNP645	32	TcSNP644	33	TcSNP642	34	TcSNP640	35	TcSNP602
36	TcSNP591	37	TcSNP589	38	TcSNP577	39	TcSNP546	40	TcSNP529
41	TcSNP522	42	TcSNP519	43	TcSNP421	44	TcSNP329	45	TcSNP305
46	TcSNP290	47	TcSNP230	48	TcSNP194	49	TcSNP189	50	TcSNP176
51	TcSNP144	52	TcSNP143	53	TcSNP131	54	TcSNP52	55	TcSNP49
56	TcSNP33	57	TcSNP19	58	TcSNP13