SNP Profiles of MAN 15 /2 [BRA] View Data

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_Input profile	AT	CT	CG	GG	AG	AT	GG	GT	AA	GT	TT	TT	AG	CC
1._RUQ_86	__	__	CG	__	__	__	__	GT	__	__	TT	__	AG	__
2._MAN_15_/2_[BRA]	__	__	CG	__	__	__	__	GT	__	__	TT	__	AG	__
3._MAN_15_/2_[BRA]	__	__	CG	__	__	__	__	GT	__	__	TT	__	AG	__
4._RUQ_86	__	__	CG	__	__	__	__	__	__	__	__	__	__	__
5._MAN_15_/2_[BRA]	__	__	CG	__	__	__	__	GT	__	__	TT	__	GG	__
6._MAN_15_/2_[BRA]	__	__	CG	__	__	__	__	GT	__	__	TT	__	GG	__
7._MAN_15_/2_[BRA]	__	__	CG	__	__	__	__	GT	__	__	TT	__	GG	__
8._MAN_15_/2_[BRA]	__	__	CG	__	__	__	__	GT	__	__	TT	__	GG	__
9._MAN_15_/2_[BRA]	__	__	CG	__	__	__	__	GT	__	__	TT	__	GG	__
10._GC-05-072-2-23	__	__	CG	__	__	__	__	GT	__	__	TT	__	GG	__
11._GC-05-072-2-23	__	__	CG	__	__	__	__	GT	__	__	TT	__	GG	__
12._GC-05-072-2-23	__	__	CG	__	__	__	__	GT	__	__	TT	__	GG	__
13._GC-05-072-2-23	__	__	CG	__	__	__	__	GT	__	__	TT	__	GG	__
14._GC-05-072-2-23	__	__	CG	__	__	__	__	GT	__	__	TT	__	GG	__
15._MAN15/2[BRA]	__	__	CG	__	__	__	__	__	__	__	__	__	__	__
16._MAN_15_/2_[BRA]	__	__	GG	__	__	__	__	TT	__	__	__	__	AA	__
17._RUQ_86	__	__	CG	__	__	__	__	AA	__	__	__	__	AG	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	TT	CC	AA	CC	AG	GG	TT	AA	AC	TT	TT	AG	GG
1._RUQ_86	__	__	__	AA	__	__	GG	__	__	__	__	__	__	GG
2._MAN_15_/2_[BRA]	__	__	__	AA	__	__	GG	__	__	__	__	__	__	GG
3._MAN_15_/2_[BRA]	__	__	__	AA	__	__	GG	__	__	__	__	__	__	GG
4._RUQ_86	__	__	CC	AA	__	__	GG	__	__	AC	__	__	AG	GG
5._MAN_15_/2_[BRA]	__	__	__	AA	__	__	GG	__	__	__	__	__	__	GG
6._MAN_15_/2_[BRA]	__	__	__	AA	__	__	GG	__	__	__	__	__	__	GG
7._MAN_15_/2_[BRA]	__	__	__	AA	__	__	GG	__	__	__	__	__	__	GG
8._MAN_15_/2_[BRA]	__	__	__	AA	__	__	GG	__	__	__	__	__	__	GG
9._MAN_15_/2_[BRA]	__	__	__	AA	__	__	GG	__	__	__	__	__	__	GG
10._GC-05-072-2-23	__	__	CC	AA	__	GG	GG	GG	__	AC	__	__	AG	GG
11._GC-05-072-2-23	__	__	CC	AA	__	GG	GG	GG	__	AC	__	__	AG	GG
12._GC-05-072-2-23	__	__	CC	AA	__	GG	GG	GG	__	AC	__	__	AG	GG
13._GC-05-072-2-23	__	__	CC	AA	__	GG	GG	GG	__	AC	__	__	AG	GG
14._GC-05-072-2-23	__	__	CC	AA	__	GG	GG	GG	__	AC	__	__	AG	GG
15._MAN15/2[BRA]	__	__	__	__	__	__	CC	__	__	__	__	__	__	__
16._MAN_15_/2_[BRA]	__	__	__	AA	__	__	GG	__	__	__	__	__	__	GG
17._RUQ_86	__	__	__	AA	__	AG	CC	CC	__	AC	__	__	AG	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CC	CG	AA	CC	AG	TT	CT	AC	AT	GG	GG	AC	CT	AC
1._RUQ_86	__	__	AA	__	__	__	__	AC	__	GG	__	AC	__	__
2._MAN_15_/2_[BRA]	__	__	AA	__	__	__	__	AC	__	GG	__	AC	__	__
3._MAN_15_/2_[BRA]	__	__	AA	__	__	__	__	AC	__	GG	__	AC	__	__
4._RUQ_86	CC	__	__	__	__	__	CT	AC	__	CG	__	AC	__	__
5._MAN_15_/2_[BRA]	__	__	AA	__	__	__	__	AC	__	CG	__	AC	__	__
6._MAN_15_/2_[BRA]	__	__	AA	__	__	__	__	AC	__	CG	__	AC	__	__
7._MAN_15_/2_[BRA]	__	__	AA	__	__	__	__	AC	__	CG	__	AC	__	__
8._MAN_15_/2_[BRA]	__	__	AA	__	__	__	__	AC	__	CG	__	AC	__	__
9._MAN_15_/2_[BRA]	__	__	AA	__	__	__	__	AC	__	CG	__	AC	__	__
10._GC-05-072-2-23	CC	__	AA	__	__	__	CT	AC	__	CG	__	AC	__	__
11._GC-05-072-2-23	CC	__	AA	__	__	__	CT	AC	__	CG	__	AC	__	__
12._GC-05-072-2-23	CC	__	AA	__	__	__	CT	AC	__	CG	__	AC	__	__
13._GC-05-072-2-23	CC	__	AA	__	__	__	CT	AC	__	CG	__	AC	__	__
14._GC-05-072-2-23	CC	__	AA	__	__	__	CT	AC	__	CG	__	AC	__	__
15._MAN15/2[BRA]	__	__	__	__	__	__	CT	AC	__	CG	__	__	__	__
16._MAN_15_/2_[BRA]	__	__	AA	__	__	__	__	AA	__	CG	__	CC	__	__
17._RUQ_86	__	__	__	__	__	__	AG	AC	__	CG	__	AC	__	__

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	CT	AA	AG	AA	CT	AG	GT	AG	CC	CC	AT	TT	GG	CC
1._RUQ_86	__	__	__	__	__	AG	__	__	__	CC	__	__	__	__
2._MAN_15_/2_[BRA]	__	__	__	__	__	AG	__	__	__	CC	__	__	__	__
3._MAN_15_/2_[BRA]	__	__	__	__	__	AG	__	__	__	CC	__	__	__	__
4._RUQ_86	__	__	AG	__	__	AG	__	__	__	CC	__	__	__	__
5._MAN_15_/2_[BRA]	__	__	__	__	__	AA	__	__	__	CC	__	__	__	__
6._MAN_15_/2_[BRA]	__	__	__	__	__	AA	__	__	__	CC	__	__	__	__
7._MAN_15_/2_[BRA]	__	__	__	__	__	AA	__	__	__	CC	__	__	__	__
8._MAN_15_/2_[BRA]	__	__	__	__	__	AA	__	__	__	CC	__	__	__	__
9._MAN_15_/2_[BRA]	__	__	__	__	__	AA	__	__	__	CC	__	__	__	__
10._GC-05-072-2-23	__	__	AG	__	__	AA	__	__	__	CC	__	__	__	__
11._GC-05-072-2-23	__	__	AG	__	__	AA	__	__	__	CC	__	__	__	__
12._GC-05-072-2-23	__	__	AG	__	__	AA	__	__	__	CC	__	__	__	__
13._GC-05-072-2-23	__	__	AG	__	__	AA	__	__	__	CC	__	__	__	__
14._GC-05-072-2-23	__	__	AG	__	__	AA	__	__	__	CC	__	__	__	__
15._MAN15/2[BRA]	__	__	__	__	__	AG	__	__	__	CC	__	__	__	__
16._MAN_15_/2_[BRA]	__	__	__	__	__	GG	__	__	__	CC	__	__	__	__
17._RUQ_86	__	__	AG	__	__	AG	__	__	__	CC	__	__	__	__

	57	58	59
_Input profile	CT	CC	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._RUQ_86	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._MAN_15_/2_[BRA]	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._MAN_15_/2_[BRA]	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._RUQ_86	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._MAN_15_/2_[BRA]	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._MAN_15_/2_[BRA]	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._MAN_15_/2_[BRA]	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._MAN_15_/2_[BRA]	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._MAN_15_/2_[BRA]	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._GC-05-072-2-23	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._GC-05-072-2-23	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._GC-05-072-2-23	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._GC-05-072-2-23	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._GC-05-072-2-23	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._MAN15/2[BRA]	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
16._MAN_15_/2_[BRA]	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
17._RUQ_86	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: MAN_15_/2_[BRA] RUQ_86

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Ame
0.375 Pur
0.590

1._MAN_15_/2_[BRA] RUQ_86

identical
13 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Dapeng Zhang, 2016

2._MAN_15_/2_[BRA]

identical
13 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: C0297

Dapeng Zhang, 2016

3._MAN_15_/2_[BRA]

identical
13 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5A N3/476 T2

Dapeng Zhang, 2016

4._MAN_15_/2_[BRA] RUQ_86

96.7 %
15 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

5._MAN_15_/2_[BRA]

88.5 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5223 5 > FP

Dapeng Zhang, 2016

6._MAN_15_/2_[BRA]

88.5 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5223 3 > FP

Dapeng Zhang, 2016

7._MAN_15_/2_[BRA]

88.5 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5223 2 > FP

Dapeng Zhang, 2016

8._MAN_15_/2_[BRA]

88.5 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5223 1 > FP

Dapeng Zhang, 2016

9._MAN_15_/2_[BRA]

88.5 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5223 4

Dapeng Zhang, 2016

10._MAN_15_/2_[BRA] GC-05-072-2-23

85.7 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP4

11._MAN_15_/2_[BRA] GC-05-072-2-23

85.7 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

12._MAN_15_/2_[BRA] GC-05-072-2-23

85.7 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP3

13._MAN_15_/2_[BRA] GC-05-072-2-23

85.7 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

14._MAN_15_/2_[BRA] GC-05-072-2-23

85.7 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

15._MAN_15_/2_[BRA] MAN15/2[BRA]

78.6 %
7 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam

Location: CEFORTT

Jocelyn De Wever et al., 2019

16._MAN_15_/2_[BRA]

70.8 %
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Location: La Montaña Lot 6 Row 53 46-48

Dapeng Zhang, 2016

17._MAN_15_/2_[BRA] RUQ_86

67.6 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1527	2	TcSNP1524	3	TcSNP1458	4	TcSNP1404	5	TcSNP1401
6	TcSNP1293	7	TcSNP1275	8	TcSNP1253	9	TcSNP1230	10	TcSNP1205
11	TcSNP1144	12	TcSNP1112	13	TcSNP1062	14	TcSNP1053	15	TcSNP1019
16	TcSNP1010	17	TcSNP999	18	TcSNP998	19	TcSNP945	20	TcSNP899
21	TcSNP872	22	TcSNP836	23	TcSNP835	24	TcSNP823	25	TcSNP800
26	TcSNP739	27	TcSNP731	28	TcSNP723	29	TcSNP702	30	TcSNP660
31	TcSNP645	32	TcSNP644	33	TcSNP642	34	TcSNP640	35	TcSNP602
36	TcSNP591	37	TcSNP589	38	TcSNP577	39	TcSNP546	40	TcSNP529
41	TcSNP522	42	TcSNP519	43	TcSNP421	44	TcSNP363	45	TcSNP329
46	TcSNP305	47	TcSNP290	48	TcSNP230	49	TcSNP194	50	TcSNP189
51	TcSNP176	52	TcSNP144	53	TcSNP143	54	TcSNP131	55	TcSNP52
56	TcSNP49	57	TcSNP33	58	TcSNP19	59	TcSNP13