SNP Profiles of IMC 47 View Data

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_Input profile	TT	TT	CG	GG	GG	TT	GG	TT	AA	GG	CC	CT	GG	TT
1._MO_9___	__	__	CG	__	__	__	__	TT	__	__	CC	__	GG	__
2._MO_9___	__	__	CG	__	__	__	__	TT	__	__	CC	__	GG	__
3._MO_9___	__	__	CG	__	__	__	__	TT	__	__	CC	__	GG	__
4._MO_9___	__	__	CG	__	__	__	__	TT	__	__	CC	__	GG	__
5._MO_9___	__	__	CG	__	__	__	__	TT	__	__	CC	__	GG	__
6._MO_9___	__	__	CG	__	__	__	__	TT	__	__	CC	__	GG	__
7._MO_9___	__	__	CG	__	__	__	__	TT	__	__	CC	__	GG	__
8._MO_9___	__	__	CG	__	__	__	__	TT	__	__	CC	__	GG	__
9._MO_9___	__	__	CG	__	__	__	__	TT	__	__	CC	__	GG	__
10._MO_9___	__	__	CG	__	__	__	__	TT	__	__	CC	__	GG	__
11._MO_9___	__	__	CG	__	__	__	__	TT	__	__	CC	__	GG	__
12._MO_9___	__	__	CG	__	__	__	__	AA	__	__	__	__	GG	__
13._MO_9___	__	__	CG	__	__	__	__	GT	__	__	CT	__	AG	__
14._MO_9___	__	__	CG	__	__	__	__	GT	__	__	CT	__	AG	__
15._MO_9___	__	__	CG	__	__	__	__	GT	__	__	CT	__	AG	__
16._MO_9___	__	__	CG	__	__	__	__	GT	__	__	CT	__	AG	__
17._MO_9___	__	__	CG	__	__	__	__	GT	__	__	CT	__	AG	__
18._MO_9___	__	__	CG	__	__	__	__	GT	__	__	CT	__	AG	__
19._MO_9___	__	__	CG	__	__	__	__	GT	__	__	CT	__	AG	__
20._MO_9___	__	__	CG	__	__	__	__	GT	__	__	CT	__	AG	__
21._MO_9___	__	__	CG	__	__	__	__	GT	__	__	CT	__	AG	__
22._MO_9___	__	__	CG	__	__	__	__	GT	__	__	CT	__	AG	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	TT	CT	AG	CC	GG	GG	TT	AA	AA	TT	CT	AG	GG
1._MO_9___	__	__	__	AG	__	__	GG	__	__	__	__	__	__	GG
2._MO_9___	__	__	__	AG	__	__	GG	__	__	__	__	__	__	GG
3._MO_9___	__	__	__	AG	__	__	GG	__	__	__	__	__	__	GG
4._MO_9___	__	__	__	AG	__	__	GG	__	__	__	__	__	__	GG
5._MO_9___	__	__	__	AG	__	__	GG	__	__	__	__	__	__	GG
6._MO_9___	__	__	__	AG	__	__	GG	__	__	__	__	__	__	GG
7._MO_9___	__	__	CT	AG	__	GG	GG	GG	__	AA	__	__	AG	GG
8._MO_9___	__	__	CT	AG	__	GG	GG	GG	__	AA	__	__	AG	GG
9._MO_9___	__	__	CT	AG	__	GG	GG	GG	__	AA	__	__	AG	GG
10._MO_9___	__	__	CT	AG	__	GG	GG	GG	__	AA	__	__	AG	GG
11._MO_9___	__	__	CT	AG	__	__	GG	GG	__	AA	__	__	AG	GG
12._MO_9___	__	__	__	AG	__	GG	CC	CC	__	AA	__	__	AG	CC
13._MO_9___	__	__	__	AG	__	__	CC	__	__	__	__	__	__	GT
14._MO_9___	__	__	__	AG	__	__	CC	__	__	__	__	__	__	GT
15._MO_9___	__	__	__	AG	__	__	CC	__	__	__	__	__	__	GT
16._MO_9___	__	__	__	AG	__	__	CC	__	__	__	__	__	__	GT
17._MO_9___	__	__	__	AG	__	__	CC	__	__	__	__	__	__	GT
18._MO_9___	__	__	CC	AG	__	AG	CC	CG	__	AC	__	__	AG	GT
19._MO_9___	__	__	CC	AG	__	AG	CC	CG	__	AC	__	__	AG	GT
20._MO_9___	__	__	CC	AG	__	AG	CC	CG	__	AC	__	__	AG	GT
21._MO_9___	__	__	CC	AG	__	AG	CC	CG	__	AC	__	__	AG	GT
22._MO_9___	__	__	CC	AG	__	AG	CC	CG	__	AC	__	__	AG	GT

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CT	CC	AA	CC	GG	CC	TT	CC	AA	GG	AG	CC	CT	AA
1._MO_9___	__	__	AA	__	__	__	__	CC	__	GG	__	CC	__	__
2._MO_9___	__	__	AA	__	__	__	__	CC	__	GG	__	CC	__	__
3._MO_9___	__	__	AA	__	__	__	__	CC	__	GG	__	CC	__	__
4._MO_9___	__	__	AA	__	__	__	__	CC	__	GG	__	CC	__	__
5._MO_9___	__	__	AA	__	__	__	__	CC	__	GG	__	CC	__	__
6._MO_9___	__	__	AA	__	__	__	__	CC	__	GG	__	CC	__	__
7._MO_9___	CC	__	AA	__	__	__	TT	CC	__	GG	__	CC	__	__
8._MO_9___	CC	__	AA	__	__	__	TT	CC	__	GG	__	CC	__	__
9._MO_9___	CC	__	AA	__	__	__	TT	CC	__	GG	__	CC	__	__
10._MO_9___	CC	__	AA	__	__	__	TT	CC	__	GG	__	CC	__	__
11._MO_9___	CC	__	AA	__	__	__	TT	CC	__	GG	__	CC	__	__
12._MO_9___	__	__	__	__	__	__	AA	CC	__	GG	__	CC	__	__
13._MO_9___	__	__	AA	__	__	__	__	AC	__	CG	__	AC	__	__
14._MO_9___	__	__	AA	__	__	__	__	AC	__	CG	__	AC	__	__
15._MO_9___	__	__	AA	__	__	__	__	AC	__	CG	__	AC	__	__
16._MO_9___	__	__	AA	__	__	__	__	AC	__	CG	__	AC	__	__
17._MO_9___	__	__	AA	__	__	__	__	AC	__	CG	__	AC	__	__
18._MO_9___	CT	__	AA	__	__	__	CC	AC	__	CG	__	AC	__	__
19._MO_9___	CT	__	AA	__	__	__	CC	AC	__	CG	__	AC	__	__
20._MO_9___	CT	__	AA	__	__	__	CC	AC	__	CG	__	AC	__	__
21._MO_9___	CT	__	AA	__	__	__	CC	AC	__	CG	__	AC	__	__
22._MO_9___	CT	__	AA	__	__	__	CC	AC	__	CG	__	AC	__	__

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	CT	AA	GG	AA	TT	AA	GG	GG	CC	AC	AA	GT	GG	CC
1._MO_9___	__	__	__	__	__	AA	__	__	__	AC	__	__	__	__
2._MO_9___	__	__	__	__	__	AA	__	__	__	AC	__	__	__	__
3._MO_9___	__	__	__	__	__	AA	__	__	__	AC	__	__	__	__
4._MO_9___	__	__	__	__	__	AA	__	__	__	AC	__	__	__	__
5._MO_9___	__	__	__	__	__	AA	__	__	__	AC	__	__	__	__
6._MO_9___	__	__	__	__	__	AA	__	__	__	AC	__	__	__	__
7._MO_9___	__	__	GG	__	__	AA	__	__	__	AC	__	__	__	__
8._MO_9___	__	__	GG	__	__	AA	__	__	__	AC	__	__	__	__
9._MO_9___	__	__	GG	__	__	AA	__	__	__	AC	__	__	__	__
10._MO_9___	__	__	GG	__	__	AA	__	__	__	AC	__	__	__	__
11._MO_9___	__	__	GG	__	__	AA	__	__	__	AC	__	__	__	__
12._MO_9___	__	__	GG	__	__	AA	__	__	__	AC	__	__	__	__
13._MO_9___	__	__	__	__	__	AG	__	__	__	AA	__	__	__	__
14._MO_9___	__	__	__	__	__	AG	__	__	__	AA	__	__	__	__
15._MO_9___	__	__	__	__	__	AG	__	__	__	AA	__	__	__	__
16._MO_9___	__	__	__	__	__	AG	__	__	__	AA	__	__	__	__
17._MO_9___	__	__	__	__	__	AG	__	__	__	AA	__	__	__	__
18._MO_9___	__	__	AA	__	__	AG	__	__	__	AA	__	__	__	__
19._MO_9___	__	__	AA	__	__	AG	__	__	__	AA	__	__	__	__
20._MO_9___	__	__	AA	__	__	AG	__	__	__	AA	__	__	__	__
21._MO_9___	__	__	AA	__	__	AG	__	__	__	AA	__	__	__	__
22._MO_9___	__	__	AA	__	__	AG	__	__	__	AA	__	__	__	__

	57	58	59
_Input profile	CT	CC	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._MO_9___	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._MO_9___	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._MO_9___	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._MO_9___	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._MO_9___	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._MO_9___	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._MO_9___	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._MO_9___	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._MO_9___	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._MO_9___	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._MO_9___	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._MO_9___	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._MO_9___	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._MO_9___	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._MO_9___	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
16._MO_9___	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
17._MO_9___	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
18._MO_9___	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
19._MO_9___	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
20._MO_9___	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
21._MO_9___	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
22._MO_9___	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: MO_9 RUQ_1691

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

1._MO_9

identical
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5222 5

Dapeng Zhang, 2016

2._MO_9

identical
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5222 1 > FP

Dapeng Zhang, 2016

3._MO_9

identical
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5321 2

Dapeng Zhang, 2016

4._MO_9

identical
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5321 3 > FP

Dapeng Zhang, 2016

5._MO_9

identical
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5321 4 > FP

Dapeng Zhang, 2016

6._MO_9

identical
13 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D835

Dapeng Zhang, 2016

7._MO_9 GC-05-119-3-21

92.9 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

8._MO_9 GC-05-119-3-21

92.9 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP4

9._MO_9 GC-05-119-3-21

92.9 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

10._MO_9 GC-05-071-2-22

92.9 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

11._MO_9 GC-05-071-2-22

92.5 %
20 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

12._MO_9 RUQ_1691

70.6 %
17 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

13._MO_9

57.7 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5321 5

Dapeng Zhang, 2016

14._MO_9

57.7 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5222 2 > FP

Dapeng Zhang, 2016

15._MO_9

57.7 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5222 2 > FP

Dapeng Zhang, 2016

16._MO_9

57.7 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5222 3 > FP

Dapeng Zhang, 2016

17._MO_9

57.7 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5222 4 > FP

Dapeng Zhang, 2016

18._MO_9 GC-05-071-2-22

52.4 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

19._MO_9 GC-05-119-3-21

52.4 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

20._MO_9 GC-05-071-2-22

52.4 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP4

21._MO_9 GC-05-071-2-22

52.4 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP3

22._MO_9 GC-05-071-2-22

52.4 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

Key to SNP Markers

Key to SNP Markers

1	TcSNP1527	2	TcSNP1524	3	TcSNP1458	4	TcSNP1404	5	TcSNP1401
6	TcSNP1293	7	TcSNP1275	8	TcSNP1253	9	TcSNP1230	10	TcSNP1205
11	TcSNP1144	12	TcSNP1112	13	TcSNP1062	14	TcSNP1053	15	TcSNP1019
16	TcSNP1010	17	TcSNP999	18	TcSNP998	19	TcSNP945	20	TcSNP899
21	TcSNP872	22	TcSNP836	23	TcSNP835	24	TcSNP823	25	TcSNP800
26	TcSNP739	27	TcSNP731	28	TcSNP723	29	TcSNP702	30	TcSNP660
31	TcSNP645	32	TcSNP644	33	TcSNP642	34	TcSNP640	35	TcSNP602
36	TcSNP591	37	TcSNP589	38	TcSNP577	39	TcSNP546	40	TcSNP529
41	TcSNP522	42	TcSNP519	43	TcSNP421	44	TcSNP363	45	TcSNP329
46	TcSNP305	47	TcSNP290	48	TcSNP230	49	TcSNP194	50	TcSNP189
51	TcSNP176	52	TcSNP144	53	TcSNP143	54	TcSNP131	55	TcSNP52
56	TcSNP49	57	TcSNP33	58	TcSNP19	59	TcSNP13