SNP Profiles of NA 149   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTTTGGGGAAAAGTTTAAGTCCTTGGCC
1._NA_149___
____GG________TT____________
2._NA_149___
____CC______________________
3._NA_149___
____CC________AA________GG__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACCCCGGGGGGGGTTTTCCTTTTGGGG
1._NA_149___
____CCGG__GGGG____CC____GGGG
2._NA_149___
____________CC______________
3._NA_149___
______GG__GGCCCC__CC____GGCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTCCAACCAACCCCAAAAGGAACCCCAA
1._NA_149___
TT__________CCAA__GG__CC____
2._NA_149___
____________CCAA__GG________
3._NA_149___
____________GGAA__GG__CC____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CCCCGGAACCAAGGGGCCCCAATTGGCC
1._NA_149___
____GG____AA______CC________
2._NA_149___
__________AA______CC________
3._NA_149___
____GG____AA______CC________
 57 58 59            
_Input profile
TTCCCTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._NA_149___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._NA_149___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._NA_149___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: NA_149 RUQ_801

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

1._NA_149 RUQ_801

identical
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._NA_149 NA149

71.4 %
7 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

3._NA_149 RUQ_801

64.7 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1527 2TcSNP1524 3TcSNP1458 4TcSNP1404 5TcSNP1401
6TcSNP1293 7TcSNP1275 8TcSNP1253 9TcSNP1230 10TcSNP1205
11TcSNP1144 12TcSNP1112 13TcSNP1062 14TcSNP1053 15TcSNP1019
16TcSNP1010 17TcSNP999 18TcSNP998 19TcSNP945 20TcSNP899
21TcSNP872 22TcSNP836 23TcSNP835 24TcSNP823 25TcSNP800
26TcSNP739 27TcSNP731 28TcSNP723 29TcSNP702 30TcSNP660
31TcSNP645 32TcSNP644 33TcSNP642 34TcSNP640 35TcSNP602
36TcSNP591 37TcSNP589 38TcSNP577 39TcSNP546 40TcSNP529
41TcSNP522 42TcSNP519 43TcSNP421 44TcSNP363 45TcSNP329
46TcSNP305 47TcSNP290 48TcSNP230 49TcSNP194 50TcSNP189
51TcSNP176 52TcSNP144 53TcSNP143 54TcSNP131 55TcSNP52
56TcSNP49 57TcSNP33 58TcSNP19 59TcSNP13