SNP Profiles of MO 9   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCTCCGGGGTTGGTTAAGGCCCTGGCT
1._PA_137_[PER]___
____CC________TT____________
2._PA_137_[PER]___
____CC________TT____CC__GG__
3._PA_137_[PER]___
____CC________TT____CC__GG__
4._PA_137_[PER]___
____CC________TT____CC__GG__
5._PA_137_[PER]___
____CC________TT____CC__GG__
6._PA_137_[PER]___
____CC________TT____CC__GG__
7._PA_137_[PER]___
____CC________TT________GG__
8._PA_137_[PER]___
____CC________TT________GG__
9._PA_137_[PER]___
TTCTCCGGGGTTGGTTAAGGCCCTGGCT
10._PA_137_[PER]___
____CC________TT____CC__GG__
11._PA_137_[PER]___
____CC________TT____CC__GG__
12._PA_137_[PER]___
____CC________TT____CC__GG__
13._PA_137_[PER]___
____CC________TT____CC__GG__
14._PA_137_[PER]___
____CC________TT____CC__GG__
15._PA_137_[PER]___
____CC________TT____CC__GG__
16._PA_137_[PER]___
____CC________TT____CC__GG__
17._PA_137_[PER]___
____CC________TT____CC__GG__
18._PA_137_[PER]___
____CC________TT____CC__GG__
19._PA_137_[PER]___
____CC________TT____CC__GG__
20._PA_137_[PER]___
____________________________
21._PA_137_[PER]___
____CC________TT____CC__GG__
22._PA_137_[PER]___
____CC________TT____CC__GG__
23._PA_137_[PER]___
____CC________TT____CC__GG__
24._PA_137_[PER]___
____CC________TT____CC__GG__
25._PA_137_[PER]___
____CC________TT____CC__GG__
26._PA_137_[PER]___
____CC________TT____CC__GG__
27._PA_137_[PER]___
____CC________TT____CC__GG__
28._PA_137_[PER]___
____CC________TT____CC__GG__
29._PA_137_[PER]___
____CC________TT____CC__GG__
30._PA_137_[PER]___
____CC________TT____CC__GG__
31._PA_137_[PER]___
____CG________GT________GG__
32._PA_137_[PER]___
____GG______________________
33._PA_137_[PER]___
____GG________AA________GG__
34._PA_137_[PER]___
____GG________AA________GG__
35._PA_137_[PER]___
____GG________AA________GG__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AATTTTAGCCGGGGTTAAAATTCTGGGG
1._PA_137_[PER]___
____TTAG____GG____AA____GGGG
2._PA_137_[PER]___
______AG____GG____________GG
3._PA_137_[PER]___
______AG____GG____________GG
4._PA_137_[PER]___
______AG____GG____________GG
5._PA_137_[PER]___
______AG____GG____________GG
6._PA_137_[PER]___
______AG____GGTT____________
7._PA_137_[PER]___
______AG____GG____________GG
8._PA_137_[PER]___
______AG____GG____________GG
9._PA_137_[PER]___
AATTTTAGCCGGGGTTAAAATTCTGGGG
10._PA_137_[PER]___
______AG____GG____________GG
11._PA_137_[PER]___
______AG____GG____________GG
12._PA_137_[PER]___
______AG____GG____________GG
13._PA_137_[PER]___
______AG____GG____________GG
14._PA_137_[PER]___
______AG____GG____________GG
15._PA_137_[PER]___
______AG____GG____________GG
16._PA_137_[PER]___
______AG____GG____________GG
17._PA_137_[PER]___
______AG____GG____________GG
18._PA_137_[PER]___
______AG____GG____________GG
19._PA_137_[PER]___
______AG____GG____________GG
20._PA_137_[PER]___
____CTAG__GG______________GG
21._PA_137_[PER]___
____TTAG__GGGGCG__AA____GGGG
22._PA_137_[PER]___
____TTAG__GGGGCG__AA____GGGG
23._PA_137_[PER]___
____TTAG__GGGGCG__AA____GGGG
24._PA_137_[PER]___
____TTAG__GGGGCG__AA____GGGG
25._PA_137_[PER]___
____TTAG__GGGGCG__AA____GGGG
26._PA_137_[PER]___
____TTAG__GGGGCG__AA____GGGG
27._PA_137_[PER]___
____TTAG__GGGGCG__AA____GGGG
28._PA_137_[PER]___
____TTAG__GGGGCG__AA____GGGG
29._PA_137_[PER]___
____TTAG__GGGGCG__AA____GGGG
30._PA_137_[PER]___
____TTAG__GGGGCG__AA____GGGG
31._PA_137_[PER]___
______AG__________________GT
32._PA_137_[PER]___
____________CC______________
33._PA_137_[PER]___
______AG__GGCCCG__AA____GGCC
34._PA_137_[PER]___
______AG__GGCCCG__AA____GGCC
35._PA_137_[PER]___
______AG__GGCCCG__AA____GGCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCCCAACCGGCCTTCCAACGAGACCCAA
1._PA_137_[PER]___
CC__________TTCC__CG__AC____
2._PA_137_[PER]___
____AA________CC__CG__AC____
3._PA_137_[PER]___
____AA________CC__CG__AC____
4._PA_137_[PER]___
____AA________CC__CG__AC____
5._PA_137_[PER]___
____AA________CC__CG__AC____
6._PA_137_[PER]___
____AA________CC__CG__AC____
7._PA_137_[PER]___
____AA________CC__CG__AC____
8._PA_137_[PER]___
____AA________CC__CG__AC____
9._PA_137_[PER]___
CCCCAACCGGCCTTCCAACGAGAACCAA
10._PA_137_[PER]___
____AG________CC__CG__AC____
11._PA_137_[PER]___
____AG________CC__CG__AC____
12._PA_137_[PER]___
____AG________CC__CG__AC____
13._PA_137_[PER]___
____AG________CC__CG__AC____
14._PA_137_[PER]___
____AG________CC__CG__AC____
15._PA_137_[PER]___
____AG________CC__CG__AC____
16._PA_137_[PER]___
____AG________CC__CG__AC____
17._PA_137_[PER]___
____AG________CC__CG__AC____
18._PA_137_[PER]___
____AG________CC__CG__AC____
19._PA_137_[PER]___
____AG________CC__CG__AC____
20._PA_137_[PER]___
__________________CG__AC____
21._PA_137_[PER]___
CC__AG______TTCC__CG__AC____
22._PA_137_[PER]___
CC__AG______TTCC__CG__AC____
23._PA_137_[PER]___
CC__AG______TTCC__CG__AC____
24._PA_137_[PER]___
CC__AG______TTCC__CG__AC____
25._PA_137_[PER]___
CC__AG______TTCC__CG__AC____
26._PA_137_[PER]___
CC__AG______TTCC__CG__AC____
27._PA_137_[PER]___
CC__AG______TTCC__CG__AC____
28._PA_137_[PER]___
CC__AG______TTCC__CG__AC____
29._PA_137_[PER]___
CC__AG______TTCC__CG__AC____
30._PA_137_[PER]___
CC__AG______TTCC__CG__AC____
31._PA_137_[PER]___
____AA____________CG__AC____
32._PA_137_[PER]___
____________TTCC__CG________
33._PA_137_[PER]___
____________AACC__CG__AC____
34._PA_137_[PER]___
____________AACC__CG__AC____
35._PA_137_[PER]___
____________AACC__CG__AC____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CTAAGGAATTAGGGGGCCACAAGGGGCC
1._PA_137_[PER]___
____GG____AG______AC________
2._PA_137_[PER]___
__________AG______AC________
3._PA_137_[PER]___
__________AG______AC________
4._PA_137_[PER]___
__________AG______AC________
5._PA_137_[PER]___
__________AG______AC________
6._PA_137_[PER]___
__________AG______AC________
7._PA_137_[PER]___
__________AG______AC________
8._PA_137_[PER]___
__________AG______AC________
9._PA_137_[PER]___
CTAAGGAATTAGGGGGCCACAAGGGGCC
10._PA_137_[PER]___
__________AG______AC________
11._PA_137_[PER]___
__________AG______AC________
12._PA_137_[PER]___
__________AG______AC________
13._PA_137_[PER]___
__________AG______AC________
14._PA_137_[PER]___
__________AG______AC________
15._PA_137_[PER]___
__________AG______AC________
16._PA_137_[PER]___
__________AG______AC________
17._PA_137_[PER]___
__________AG______AC________
18._PA_137_[PER]___
__________AG______AC________
19._PA_137_[PER]___
__________AG______AC________
20._PA_137_[PER]___
__________AG______AC________
21._PA_137_[PER]___
____GG____AG______AC________
22._PA_137_[PER]___
____GG____AG______AC________
23._PA_137_[PER]___
____GG____AG______AC________
24._PA_137_[PER]___
____GG____AG______AC________
25._PA_137_[PER]___
____GG____AG______AC________
26._PA_137_[PER]___
____GG____AG______AC________
27._PA_137_[PER]___
____GG____AG______AC________
28._PA_137_[PER]___
____GG____AG______AC________
29._PA_137_[PER]___
____GG____AG______AC________
30._PA_137_[PER]___
____GG____AG______AC________
31._PA_137_[PER]___
__________AG______AC________
32._PA_137_[PER]___
__________AG______AC________
33._PA_137_[PER]___
____GG____AG______AC________
34._PA_137_[PER]___
____GG____AG______AC________
35._PA_137_[PER]___
____GG____AG______AC________
 57 58 59            
_Input profile
CTCCTTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._PA_137_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._PA_137_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._PA_137_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._PA_137_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._PA_137_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._PA_137_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._PA_137_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._PA_137_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._PA_137_[PER]___
CTCCTTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._PA_137_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._PA_137_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._PA_137_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._PA_137_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._PA_137_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._PA_137_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._PA_137_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._PA_137_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._PA_137_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._PA_137_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._PA_137_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._PA_137_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._PA_137_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._PA_137_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._PA_137_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._PA_137_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
26._PA_137_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
27._PA_137_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
28._PA_137_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
29._PA_137_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
30._PA_137_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
31._PA_137_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
32._PA_137_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
33._PA_137_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
34._PA_137_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
35._PA_137_[PER]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: PA_137_[PER] RUQ_1081

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

1._PA_137_[PER] RUQ_1081

identical
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._PA_137_[PER] RUQ_1081

identical
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

3._PA_137_[PER] RUQ_36

identical
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

4._PA_137_[PER] RUQ_1081

identical
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

5._PA_137_[PER]

identical
13 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row 7 C0181 28
 Dapeng Zhang, 2016

6._PA_137_[PER]

identical
13 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D274 T1
 Dapeng Zhang, 2014

7._PA_137_[PER]

identical
12 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D430
 Dapeng Zhang, 2016

8._PA_137_[PER]

identical
12 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D274 T1
 Dapeng Zhang, 2016

9._PA_137_[PER] RUQ_36

99.2 %
59 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
Par
0.995

10._PA_137_[PER]

96.2 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5319 3
 Dapeng Zhang, 2016

11._PA_137_[PER]

96.2 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 2
 Dapeng Zhang, 2016

12._PA_137_[PER]

96.2 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 4
 Dapeng Zhang, 2016

13._PA_137_[PER]

96.2 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 5
 Dapeng Zhang, 2016

14._PA_137_[PER]

96.2 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 1 > FP
 Dapeng Zhang, 2016

15._PA_137_[PER]

96.2 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 3 > FP
 Dapeng Zhang, 2016

16._PA_137_[PER]

96.2 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5319 2
 Dapeng Zhang, 2016

17._PA_137_[PER]

96.2 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5319 4
 Dapeng Zhang, 2016

18._PA_137_[PER]

96.2 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5319 5
 Dapeng Zhang, 2016

19._PA_137_[PER]

96.2 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5319 1 > FP
 Dapeng Zhang, 2016

20._PA_137_[PER] RUQ_36

93.8 %
8 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._PA_137_[PER] GC-05-009-1-09

92.9 %
21 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

22._PA_137_[PER] GC-05-009-1-09

92.9 %
21 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

23._PA_137_[PER] GC-05-009-1-09

92.9 %
21 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

24._PA_137_[PER] GC-05-009-1-09

92.9 %
21 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

25._PA_137_[PER] GC-05-009-1-09

92.9 %
21 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

26._PA_137_[PER] GC-05-117-3-19

92.9 %
21 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP3
 Mars, 2018

27._PA_137_[PER] GC-05-117-3-19

92.9 %
21 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

28._PA_137_[PER] GC-05-117-3-19

92.9 %
21 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

29._PA_137_[PER] GC-05-117-3-19

92.9 %
21 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

30._PA_137_[PER] GC-05-117-3-19

92.9 %
21 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

31._PA_137_[PER] RUQ_36

85 %
10 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

32._PA_137_[PER] PA137[PER]

71.4 %
7 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

33._PA_137_[PER] RUQ_36

64.7 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

34._PA_137_[PER] MITC-000400

64.7 %
17 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

35._PA_137_[PER] PA_137_[PER]_Fld#_201_Plt#_2

64.7 %
17 shared markers

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USDA-TARS, United States of America
Location: Field: 201, Tree: 2
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1527 2TcSNP1524 3TcSNP1458 4TcSNP1404 5TcSNP1401
6TcSNP1293 7TcSNP1275 8TcSNP1253 9TcSNP1230 10TcSNP1205
11TcSNP1144 12TcSNP1112 13TcSNP1062 14TcSNP1053 15TcSNP1019
16TcSNP1010 17TcSNP999 18TcSNP998 19TcSNP945 20TcSNP899
21TcSNP872 22TcSNP836 23TcSNP835 24TcSNP823 25TcSNP800
26TcSNP739 27TcSNP731 28TcSNP723 29TcSNP702 30TcSNP660
31TcSNP645 32TcSNP644 33TcSNP642 34TcSNP640 35TcSNP602
36TcSNP591 37TcSNP589 38TcSNP577 39TcSNP546 40TcSNP529
41TcSNP522 42TcSNP519 43TcSNP421 44TcSNP363 45TcSNP329
46TcSNP305 47TcSNP290 48TcSNP230 49TcSNP194 50TcSNP189
51TcSNP176 52TcSNP144 53TcSNP143 54TcSNP131 55TcSNP52
56TcSNP49 57TcSNP33 58TcSNP19 59TcSNP13