SNP Profiles of PA 137 [PER]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCTCCGGGGTTGGTTAAGGCCCTGGCT
1._RUQ_1081
____CC________TT____________
2._RUQ_1081
____CC________TT____CC__GG__
3._RUQ_36
____CC________TT____CC__GG__
4._RUQ_1081
____CC________TT____CC__GG__
5._PA_137_[PER]
____CC________TT____CC__GG__
6._PA_137_[PER]
____CC________TT____CC__GG__
7._PA_137_[PER]
____CC________TT________GG__
8._PA_137_[PER]
____CC________TT________GG__
9._RUQ_36
TTCTCCGGGGTTGGTTAAGGCCCTGGCT
10._PA_137_[PER]
____CC________TT____CC__GG__
11._PA_137_[PER]
____CC________TT____CC__GG__
12._PA_137_[PER]
____CC________TT____CC__GG__
13._PA_137_[PER]
____CC________TT____CC__GG__
14._PA_137_[PER]
____CC________TT____CC__GG__
15._PA_137_[PER]
____CC________TT____CC__GG__
16._PA_137_[PER]
____CC________TT____CC__GG__
17._PA_137_[PER]
____CC________TT____CC__GG__
18._PA_137_[PER]
____CC________TT____CC__GG__
19._PA_137_[PER]
____CC________TT____CC__GG__
20._RUQ_36
____________________________
21._GC-05-009-1-09
____CC________TT____CC__GG__
22._GC-05-009-1-09
____CC________TT____CC__GG__
23._GC-05-009-1-09
____CC________TT____CC__GG__
24._GC-05-009-1-09
____CC________TT____CC__GG__
25._GC-05-009-1-09
____CC________TT____CC__GG__
26._GC-05-117-3-19
____CC________TT____CC__GG__
27._GC-05-117-3-19
____CC________TT____CC__GG__
28._GC-05-117-3-19
____CC________TT____CC__GG__
29._GC-05-117-3-19
____CC________TT____CC__GG__
30._GC-05-117-3-19
____CC________TT____CC__GG__
31._RUQ_36
____CG________GT________GG__
32._PA137[PER]
____GG______________________
33._RUQ_36
____GG________AA________GG__
34._MITC-000400
____GG________AA________GG__
35._PA_137_[PER]_Fld#_201_Plt#_2
____GG________AA________GG__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AATTTTAGCCGGGGTTAAAATTCTGGGG
1._RUQ_1081
____TTAG____GG____AA____GGGG
2._RUQ_1081
______AG____GG____________GG
3._RUQ_36
______AG____GG____________GG
4._RUQ_1081
______AG____GG____________GG
5._PA_137_[PER]
______AG____GG____________GG
6._PA_137_[PER]
______AG____GGTT____________
7._PA_137_[PER]
______AG____GG____________GG
8._PA_137_[PER]
______AG____GG____________GG
9._RUQ_36
AATTTTAGCCGGGGTTAAAATTCTGGGG
10._PA_137_[PER]
______AG____GG____________GG
11._PA_137_[PER]
______AG____GG____________GG
12._PA_137_[PER]
______AG____GG____________GG
13._PA_137_[PER]
______AG____GG____________GG
14._PA_137_[PER]
______AG____GG____________GG
15._PA_137_[PER]
______AG____GG____________GG
16._PA_137_[PER]
______AG____GG____________GG
17._PA_137_[PER]
______AG____GG____________GG
18._PA_137_[PER]
______AG____GG____________GG
19._PA_137_[PER]
______AG____GG____________GG
20._RUQ_36
____CTAG__GG______________GG
21._GC-05-009-1-09
____TTAG__GGGGCG__AA____GGGG
22._GC-05-009-1-09
____TTAG__GGGGCG__AA____GGGG
23._GC-05-009-1-09
____TTAG__GGGGCG__AA____GGGG
24._GC-05-009-1-09
____TTAG__GGGGCG__AA____GGGG
25._GC-05-009-1-09
____TTAG__GGGGCG__AA____GGGG
26._GC-05-117-3-19
____TTAG__GGGGCG__AA____GGGG
27._GC-05-117-3-19
____TTAG__GGGGCG__AA____GGGG
28._GC-05-117-3-19
____TTAG__GGGGCG__AA____GGGG
29._GC-05-117-3-19
____TTAG__GGGGCG__AA____GGGG
30._GC-05-117-3-19
____TTAG__GGGGCG__AA____GGGG
31._RUQ_36
______AG__________________GT
32._PA137[PER]
____________CC______________
33._RUQ_36
______AG__GGCCCG__AA____GGCC
34._MITC-000400
______AG__GGCCCG__AA____GGCC
35._PA_137_[PER]_Fld#_201_Plt#_2
______AG__GGCCCG__AA____GGCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCCCAACCGGCCTTCCAACGAGACCCAA
1._RUQ_1081
CC__________TTCC__CG__AC____
2._RUQ_1081
____AA________CC__CG__AC____
3._RUQ_36
____AA________CC__CG__AC____
4._RUQ_1081
____AA________CC__CG__AC____
5._PA_137_[PER]
____AA________CC__CG__AC____
6._PA_137_[PER]
____AA________CC__CG__AC____
7._PA_137_[PER]
____AA________CC__CG__AC____
8._PA_137_[PER]
____AA________CC__CG__AC____
9._RUQ_36
CCCCAACCGGCCTTCCAACGAGAACCAA
10._PA_137_[PER]
____AG________CC__CG__AC____
11._PA_137_[PER]
____AG________CC__CG__AC____
12._PA_137_[PER]
____AG________CC__CG__AC____
13._PA_137_[PER]
____AG________CC__CG__AC____
14._PA_137_[PER]
____AG________CC__CG__AC____
15._PA_137_[PER]
____AG________CC__CG__AC____
16._PA_137_[PER]
____AG________CC__CG__AC____
17._PA_137_[PER]
____AG________CC__CG__AC____
18._PA_137_[PER]
____AG________CC__CG__AC____
19._PA_137_[PER]
____AG________CC__CG__AC____
20._RUQ_36
__________________CG__AC____
21._GC-05-009-1-09
CC__AG______TTCC__CG__AC____
22._GC-05-009-1-09
CC__AG______TTCC__CG__AC____
23._GC-05-009-1-09
CC__AG______TTCC__CG__AC____
24._GC-05-009-1-09
CC__AG______TTCC__CG__AC____
25._GC-05-009-1-09
CC__AG______TTCC__CG__AC____
26._GC-05-117-3-19
CC__AG______TTCC__CG__AC____
27._GC-05-117-3-19
CC__AG______TTCC__CG__AC____
28._GC-05-117-3-19
CC__AG______TTCC__CG__AC____
29._GC-05-117-3-19
CC__AG______TTCC__CG__AC____
30._GC-05-117-3-19
CC__AG______TTCC__CG__AC____
31._RUQ_36
____AA____________CG__AC____
32._PA137[PER]
____________TTCC__CG________
33._RUQ_36
____________AACC__CG__AC____
34._MITC-000400
____________AACC__CG__AC____
35._PA_137_[PER]_Fld#_201_Plt#_2
____________AACC__CG__AC____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CTAAGGAATTAGGGGGCCACAAGGGGCC
1._RUQ_1081
____GG____AG______AC________
2._RUQ_1081
__________AG______AC________
3._RUQ_36
__________AG______AC________
4._RUQ_1081
__________AG______AC________
5._PA_137_[PER]
__________AG______AC________
6._PA_137_[PER]
__________AG______AC________
7._PA_137_[PER]
__________AG______AC________
8._PA_137_[PER]
__________AG______AC________
9._RUQ_36
CTAAGGAATTAGGGGGCCACAAGGGGCC
10._PA_137_[PER]
__________AG______AC________
11._PA_137_[PER]
__________AG______AC________
12._PA_137_[PER]
__________AG______AC________
13._PA_137_[PER]
__________AG______AC________
14._PA_137_[PER]
__________AG______AC________
15._PA_137_[PER]
__________AG______AC________
16._PA_137_[PER]
__________AG______AC________
17._PA_137_[PER]
__________AG______AC________
18._PA_137_[PER]
__________AG______AC________
19._PA_137_[PER]
__________AG______AC________
20._RUQ_36
__________AG______AC________
21._GC-05-009-1-09
____GG____AG______AC________
22._GC-05-009-1-09
____GG____AG______AC________
23._GC-05-009-1-09
____GG____AG______AC________
24._GC-05-009-1-09
____GG____AG______AC________
25._GC-05-009-1-09
____GG____AG______AC________
26._GC-05-117-3-19
____GG____AG______AC________
27._GC-05-117-3-19
____GG____AG______AC________
28._GC-05-117-3-19
____GG____AG______AC________
29._GC-05-117-3-19
____GG____AG______AC________
30._GC-05-117-3-19
____GG____AG______AC________
31._RUQ_36
__________AG______AC________
32._PA137[PER]
__________AG______AC________
33._RUQ_36
____GG____AG______AC________
34._MITC-000400
____GG____AG______AC________
35._PA_137_[PER]_Fld#_201_Plt#_2
____GG____AG______AC________
 57 58 59            
_Input profile
CTCCTTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._RUQ_1081
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._RUQ_1081
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._RUQ_36
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._RUQ_1081
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._PA_137_[PER]
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._PA_137_[PER]
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._PA_137_[PER]
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._PA_137_[PER]
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._RUQ_36
CTCCTTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._PA_137_[PER]
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._PA_137_[PER]
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._PA_137_[PER]
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._PA_137_[PER]
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._PA_137_[PER]
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._PA_137_[PER]
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._PA_137_[PER]
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._PA_137_[PER]
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._PA_137_[PER]
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._PA_137_[PER]
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._RUQ_36
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._GC-05-009-1-09
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._GC-05-009-1-09
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._GC-05-009-1-09
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._GC-05-009-1-09
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._GC-05-009-1-09
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
26._GC-05-117-3-19
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
27._GC-05-117-3-19
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
28._GC-05-117-3-19
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
29._GC-05-117-3-19
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
30._GC-05-117-3-19
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
31._RUQ_36
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
32._PA137[PER]
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
33._RUQ_36
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
34._MITC-000400
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
35._PA_137_[PER]_Fld#_201_Plt#_2
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: PA_137_[PER] RUQ_1081

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

1._PA_137_[PER] RUQ_1081

identical
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._PA_137_[PER] RUQ_1081

identical
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

3._PA_137_[PER] RUQ_36

identical
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

4._PA_137_[PER] RUQ_1081

identical
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

5._PA_137_[PER]

identical
13 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row 7 C0181 28
 Dapeng Zhang, 2016

6._PA_137_[PER]

identical
13 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D274 T1
 Dapeng Zhang, 2014

7._PA_137_[PER]

identical
12 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D430
 Dapeng Zhang, 2016

8._PA_137_[PER]

identical
12 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D274 T1
 Dapeng Zhang, 2016

9._PA_137_[PER] RUQ_36

99.2 %
59 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

10._PA_137_[PER]

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 3
 Dapeng Zhang, 2016

11._PA_137_[PER]

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 2
 Dapeng Zhang, 2016

12._PA_137_[PER]

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 4
 Dapeng Zhang, 2016

13._PA_137_[PER]

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 5
 Dapeng Zhang, 2016

14._PA_137_[PER]

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 1 > FP
 Dapeng Zhang, 2016

15._PA_137_[PER]

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 3 > FP
 Dapeng Zhang, 2016

16._PA_137_[PER]

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 2
 Dapeng Zhang, 2016

17._PA_137_[PER]

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 4
 Dapeng Zhang, 2016

18._PA_137_[PER]

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 5
 Dapeng Zhang, 2016

19._PA_137_[PER]

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 1 > FP
 Dapeng Zhang, 2016

20._PA_137_[PER] RUQ_36

93.8 %
8 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._PA_137_[PER] GC-05-009-1-09

92.9 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

22._PA_137_[PER] GC-05-009-1-09

92.9 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

23._PA_137_[PER] GC-05-009-1-09

92.9 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

24._PA_137_[PER] GC-05-009-1-09

92.9 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

25._PA_137_[PER] GC-05-009-1-09

92.9 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

26._PA_137_[PER] GC-05-117-3-19

92.9 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP3
 Mars, 2018

27._PA_137_[PER] GC-05-117-3-19

92.9 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

28._PA_137_[PER] GC-05-117-3-19

92.9 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

29._PA_137_[PER] GC-05-117-3-19

92.9 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

30._PA_137_[PER] GC-05-117-3-19

92.9 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

31._PA_137_[PER] RUQ_36

85 %
10 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

32._PA_137_[PER] PA137[PER]

71.4 %
7 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

33._PA_137_[PER] RUQ_36

64.7 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

34._PA_137_[PER] MITC-000400

64.7 %
17 shared markers

USDA-SHRS, United States of America
 Mars, 2018

35._PA_137_[PER] PA_137_[PER]_Fld#_201_Plt#_2

64.7 %
17 shared markers

USDA-TARS, United States of America
Location: Field: 201, Tree: 2
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1527 2TcSNP1524 3TcSNP1458 4TcSNP1404 5TcSNP1401
6TcSNP1293 7TcSNP1275 8TcSNP1253 9TcSNP1230 10TcSNP1205
11TcSNP1144 12TcSNP1112 13TcSNP1062 14TcSNP1053 15TcSNP1019
16TcSNP1010 17TcSNP999 18TcSNP998 19TcSNP945 20TcSNP899
21TcSNP872 22TcSNP836 23TcSNP835 24TcSNP823 25TcSNP800
26TcSNP739 27TcSNP731 28TcSNP723 29TcSNP702 30TcSNP660
31TcSNP645 32TcSNP644 33TcSNP642 34TcSNP640 35TcSNP602
36TcSNP591 37TcSNP589 38TcSNP577 39TcSNP546 40TcSNP529
41TcSNP522 42TcSNP519 43TcSNP421 44TcSNP363 45TcSNP329
46TcSNP305 47TcSNP290 48TcSNP230 49TcSNP194 50TcSNP189
51TcSNP176 52TcSNP144 53TcSNP143 54TcSNP131 55TcSNP52
56TcSNP49 57TcSNP33 58TcSNP19 59TcSNP13