SNP Profiles of POUND 18   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
ATTTCGAGAGTTGTGTAAGGCCCCGGCC
1._POUND_18___
ATTTCGAGAGTTGTGTAAGGCCCCGGCC
2._POUND_18___
____CG________GT____________
3._POUND_18___
____CG________GT____CC__GG__
4._POUND_18___
____CG________GT____CC__GG__
5._POUND_18___
____CG________GT____CC__GG__
6._POUND_18___
____CG________GT____CC__GG__
7._POUND_18___
____CG________GT____CC__GG__
8._POUND_18___
____CG________GT____CC__GG__
9._POUND_18___
____CG________GT____CC__GG__
10._POUND_18___
____CG________GT____CC__GG__
11._POUND_18___
____CG________GT____CC__GG__
12._POUND_18___
____CG________GT____CC__GG__
13._POUND_18___
____CG________GT____CC__GG__
14._POUND_18___
____CG________GT____CC__GG__
15._POUND_18___
____CG________GT____CC__GG__
16._POUND_18___
____CG________GT____CC__GG__
17._POUND_18___
____CG________GT____CC__GG__
18._POUND_18___
____CG________GT____CC__GG__
19._POUND_18___
____CG________GT____CC__GG__
20._POUND_18___
____CG________GT____CC__GG__
21._POUND_18___
____CG________GT____CC__GG__
22._POUND_18___
____CG________GT____CC__GG__
23._POUND_18___
____CG________AC________GG__
24._POUND_18___
____CG________AC________GG__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACCCCAACCGGCCCTATACTTCTGGGG
1._POUND_18___
AACCCCAACCGGCCCTATACTTCTGGGG
2._POUND_18___
____CCAA____CC____AC____GGGG
3._POUND_18___
______AA____CC____________GG
4._POUND_18___
______AA____CC____________GG
5._POUND_18___
______AA____CC____________GG
6._POUND_18___
______AA____CC____________GG
7._POUND_18___
______AA____CC____________GG
8._POUND_18___
______AA____CC____________GG
9._POUND_18___
______AA____CC____________GG
10._POUND_18___
______AA____CC____________GG
11._POUND_18___
______AA____CC____________GG
12._POUND_18___
______AA____CC____________GG
13._POUND_18___
______AA____CC____________GG
14._POUND_18___
____CCAA__GGCCCG__AC____GGGG
15._POUND_18___
____CCAA__GGCCCG__AC____GGGG
16._POUND_18___
____CCAA__GGCCCG__AC____GGGG
17._POUND_18___
____CCAA__GGCCCG__AC____GGGG
18._POUND_18___
____CCAA__GGCCCG__AC____GGGG
19._POUND_18___
____CCAA__GGCCCG__AC____GGGG
20._POUND_18___
____CCAA__GGCCCG__AC____GGGG
21._POUND_18___
____CCAA__GGCCCG__AC____GGGG
22._POUND_18___
____CCAA__GGCCCG__AC____GGGG
23._POUND_18___
______AA__GGGGCG__AC____GGCC
24._POUND_18___
______AA__GGGGCG__AC____GGCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTCGAACCAGTTCCACTTGGAGACCCAA
1._POUND_18___
TTCGAACCAGTTCCACTTGGAGACCCAA
2._POUND_18___
TT__________CCAC__GG__AC____
3._POUND_18___
____AA________AC__GG__AC____
4._POUND_18___
____AA________AC__GG__AC____
5._POUND_18___
____AA________AC__GG__AC____
6._POUND_18___
____AA________AC__GG__AC____
7._POUND_18___
____AA________AC__GG__AC____
8._POUND_18___
____AA________AC__GG__AC____
9._POUND_18___
____AA________AC__GG__AC____
10._POUND_18___
____AA________AC__GG__AC____
11._POUND_18___
____AA________AC__GG__AC____
12._POUND_18___
____AA________AC__GG__AC____
13._POUND_18___
____AA________AC__GG__AC____
14._POUND_18___
CC__AA______CCAC__GG__AC____
15._POUND_18___
CC__AA______CCAC__GG__AC____
16._POUND_18___
CC__AA______CCAC__GG__AC____
17._POUND_18___
CC__AA______CCAC__GG__AC____
18._POUND_18___
CC__AA______CCAC__GG__AC____
19._POUND_18___
CC__AA______CCAC__GG__AC____
20._POUND_18___
CC__AA______CCAC__GG__AC____
21._POUND_18___
CC__AA______CCAC__GG__AC____
22._POUND_18___
CC__AA______CCAC__GG__AC____
23._POUND_18___
____________GGAC__GG__AC____
24._POUND_18___
____________GGAC__GG__AC____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CCAAAGAATTAAGTAGCCACATGTGGCC
1._POUND_18___
CCAAAGAATTAAGTAGCCACATGTGGCC
2._POUND_18___
____AG____AA______AC________
3._POUND_18___
__________AA______AC________
4._POUND_18___
__________AA______AC________
5._POUND_18___
__________AA______AC________
6._POUND_18___
__________AA______AC________
7._POUND_18___
__________AA______AC________
8._POUND_18___
__________AA______AC________
9._POUND_18___
__________AA______AC________
10._POUND_18___
__________AA______AC________
11._POUND_18___
__________AA______AC________
12._POUND_18___
__________AA______AC________
13._POUND_18___
__________AA______AC________
14._POUND_18___
____AG____AA______AC________
15._POUND_18___
____AG____AA______AC________
16._POUND_18___
____AG____AA______AC________
17._POUND_18___
____AG____AA______AC________
18._POUND_18___
____AG____AA______AC________
19._POUND_18___
____AG____AA______AC________
20._POUND_18___
____AG____AA______AC________
21._POUND_18___
____AG____AA______AC________
22._POUND_18___
____AG____AA______AC________
23._POUND_18___
____AG____AA______AC________
24._POUND_18___
____AG____AA______AC________
 57 58 59            
_Input profile
TTCCCTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._POUND_18___
TTCCCTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._POUND_18___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._POUND_18___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._POUND_18___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._POUND_18___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._POUND_18___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._POUND_18___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._POUND_18___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._POUND_18___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._POUND_18___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._POUND_18___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._POUND_18___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._POUND_18___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._POUND_18___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._POUND_18___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._POUND_18___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._POUND_18___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._POUND_18___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._POUND_18___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._POUND_18___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._POUND_18___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._POUND_18___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._POUND_18___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._POUND_18___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: POUND_18 RUQ_874B

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

1._POUND_18 RUQ_874

identical
59 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

2._POUND_18 RUQ_874

identical
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._POUND_18

identical
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 4
 Dapeng Zhang, 2016

4._POUND_18

identical
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 2 > FP
 Dapeng Zhang, 2016

5._POUND_18

identical
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 12
 Dapeng Zhang, 2016

6._POUND_18

identical
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 11
 Dapeng Zhang, 2016

7._POUND_18

identical
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 9
 Dapeng Zhang, 2016

8._POUND_18

identical
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 7
 Dapeng Zhang, 2016

9._POUND_18

identical
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 6
 Dapeng Zhang, 2016

10._POUND_18

identical
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 3
 Dapeng Zhang, 2016

11._POUND_18

identical
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 1
 Dapeng Zhang, 2016

12._POUND_18 RUQ_874

identical
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

13._POUND_18

identical
13 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F447 T2
 Dapeng Zhang, 2016

14._POUND_18 GC-08-064-1-86

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

15._POUND_18 GC-08-064-1-86

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

16._POUND_18 GC-08-064-1-86

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

17._POUND_18 GC-08-064-1-86

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

18._POUND_18 GC-08-064-1-86

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

19._POUND_18 GC-08-064-1-86

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

20._POUND_18 GC-08-064-1-86

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

21._POUND_18 GC-08-064-1-86

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

22._POUND_18 GC-08-064-1-86

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

23._POUND_18 GC-08-64-1-86

70.6 %
17 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 8, Block: 1, Rep: 86, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

24._POUND_18 RUQ_874

70.6 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1527 2TcSNP1524 3TcSNP1458 4TcSNP1404 5TcSNP1401
6TcSNP1293 7TcSNP1275 8TcSNP1253 9TcSNP1230 10TcSNP1205
11TcSNP1144 12TcSNP1112 13TcSNP1062 14TcSNP1053 15TcSNP1019
16TcSNP1010 17TcSNP999 18TcSNP998 19TcSNP945 20TcSNP899
21TcSNP872 22TcSNP836 23TcSNP835 24TcSNP823 25TcSNP800
26TcSNP739 27TcSNP731 28TcSNP723 29TcSNP702 30TcSNP660
31TcSNP645 32TcSNP644 33TcSNP642 34TcSNP640 35TcSNP602
36TcSNP591 37TcSNP589 38TcSNP577 39TcSNP546 40TcSNP529
41TcSNP522 42TcSNP519 43TcSNP421 44TcSNP363 45TcSNP329
46TcSNP305 47TcSNP290 48TcSNP230 49TcSNP194 50TcSNP189
51TcSNP176 52TcSNP144 53TcSNP143 54TcSNP131 55TcSNP52
56TcSNP49 57TcSNP33 58TcSNP19 59TcSNP13