SNP Profiles of EET 272 [ECU]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
ATCTCCGGGGATGGTTCCAAGTCCCCGG
1._RUQ_6
____CC________TT____________
2._EET_272_[ECU]
____CC________TT______CC__GG
3._EET_272_[ECU]
____CC________TT______CC__GG
4._EET_272_[ECU]
____CC________TT______CC__GG
5._EET_272_[ECU]
____CC________TT______CC__GG
6._EET_272_[ECU]
____CC________TT______CC__GG
7._EET_272_[ECU]
____CC________TT______CC__GG
8._EET_272_[ECU]
____CC________TT______CC__GG
9._EET_272_[ECU]
____CC________TT______CC__GG
10._EET_272_[ECU]
______________TT______CT____
11._GC-03-032-3-11
____CC________TT______CC__GG
12._GC-03-032-3-11
____CC________TT______CC__GG
13._GC-03-032-3-11
____CC________TT______CC__GG
14._GC-03-032-3-11
____CC________TT______CC__GG
15._GC-03-032-3-11
____CC________TT______CC__GG
16._GC-03-032-3-11
____CC________TT______CC__GG
17._GC-03-032-3-11
____CC________TT______CC__GG
18._GC-03-032-3-11
____CC________TT______CC__GG
19._EET_272_[ECU]
____GG________TT______CC__AG
20._EET_272_[ECU]
____GG________TT______CC__AG
21._RUQ_6
____GG________AA__________GG
22._MITC-000381
____GG________AA__________GG
23._GC-03-032-3-11
____GG________TT______CC__AG
24._GC-03-032-3-11
____GG________TT______CC__AG
25._GC-03-32-3-11
____CC________AA__________AG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CCAACTCTAGCGGGCCTTATACTTTTGG
1._RUQ_6
________AG____CC____AC____GG
2._EET_272_[ECU]
________AG____CC____________
3._EET_272_[ECU]
________AG____CC____________
4._EET_272_[ECU]
________AG____CC____________
5._EET_272_[ECU]
________AG____CC____________
6._EET_272_[ECU]
________AG____CC____________
7._EET_272_[ECU]
________AG____CC____________
8._EET_272_[ECU]
________AG____CC____________
9._EET_272_[ECU]
________AG____CC____________
10._EET_272_[ECU]
________AG__________________
11._GC-03-032-3-11
______CTAG__GGCCGG__AC____GG
12._GC-03-032-3-11
______CTAG__GGCCGG__AC____GG
13._GC-03-032-3-11
______CTAG__GGCCGG__AC____GG
14._GC-03-032-3-11
______CTAG__GGCCGG__AC____GG
15._GC-03-032-3-11
______CTAG__GGCCGG__AC____GG
16._GC-03-032-3-11
______CTAG__GGCCGG__AC____GG
17._GC-03-032-3-11
______CTAG__GGCCGG__AC____GG
18._GC-03-032-3-11
______CTAG__GGCCGG__AC____GG
19._EET_272_[ECU]
________AG____GG____________
20._EET_272_[ECU]
________AG____GG____________
21._RUQ_6
________AG__GGGGCC__AC____GG
22._MITC-000381
________AG__GGGGCC__AC____GG
23._GC-03-032-3-11
______CCAG__GGGGCG__AA____AG
24._GC-03-032-3-11
______CCAG__GGGGCG__AA____AG
25._GC-03-32-3-11
________AG__GGCCCG__AA____AG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGTTCCAACCAATTCCTTGGAGACCCAA
1._RUQ_6
GGTT__________CC__GG__CC____
2._EET_272_[ECU]
GG____AA__________GG__CC____
3._EET_272_[ECU]
GG____AA__________GG__CC____
4._EET_272_[ECU]
GG____AA__________GG__CC____
5._EET_272_[ECU]
GG____AA__________GG__CC____
6._EET_272_[ECU]
GG____AA__________GG__CC____
7._EET_272_[ECU]
GG____AA__________GG__CC____
8._EET_272_[ECU]
GG____AA__________GG__CC____
9._EET_272_[ECU]
GG____AA__________GG__CC____
10._EET_272_[ECU]
GG____AA____________________
11._GC-03-032-3-11
GGCC__AA______CC__GG__CC____
12._GC-03-032-3-11
GGCC__AA______CC__GG__CC____
13._GC-03-032-3-11
GGCC__AA______CC__GG__CC____
14._GC-03-032-3-11
GGCC__AA______CC__GG__CC____
15._GC-03-032-3-11
GGCC__AA______CC__GG__CC____
16._GC-03-032-3-11
GGCC__AA______CC__GG__CC____
17._GC-03-032-3-11
GGCC__AA______CC__GG__CC____
18._GC-03-032-3-11
GGCC__AA______CC__GG__CC____
19._EET_272_[ECU]
GG____AG__________CG__AC____
20._EET_272_[ECU]
GG____AG__________CG__AC____
21._RUQ_6
CC____________GG__GG__CC____
22._MITC-000381
CC____________GG__GG__CC____
23._GC-03-032-3-11
GGCT__AG______CT__CG__AC____
24._GC-03-032-3-11
GGCT__AG______CT__CG__AC____
25._GC-03-32-3-11
CC____________AG__CG__AC____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CCACAGAATTAAGGGGCTACATTTGGCC
1._RUQ_6
____AG____AA______AC________
2._EET_272_[ECU]
__________AA______AC________
3._EET_272_[ECU]
__________AA______AC________
4._EET_272_[ECU]
__________AA______AC________
5._EET_272_[ECU]
__________AA______AC________
6._EET_272_[ECU]
__________AA______AC________
7._EET_272_[ECU]
__________AA______AC________
8._EET_272_[ECU]
__________AA______AC________
9._EET_272_[ECU]
__________AA______AC________
10._EET_272_[ECU]
__________AA______AC________
11._GC-03-032-3-11
____AG____AA______AC________
12._GC-03-032-3-11
____AG____AA______AC________
13._GC-03-032-3-11
____AG____AA______AC________
14._GC-03-032-3-11
____AG____AA______AC________
15._GC-03-032-3-11
____AG____AA______AC________
16._GC-03-032-3-11
____AG____AA______AC________
17._GC-03-032-3-11
____AG____AA______AC________
18._GC-03-032-3-11
____AG____AA______AC________
19._EET_272_[ECU]
__________AG______CC________
20._EET_272_[ECU]
__________AG______CC________
21._RUQ_6
____AG____AA______AC________
22._MITC-000381
____AG____AA______AC________
23._GC-03-032-3-11
____GG____AG______CC________
24._GC-03-032-3-11
____GG____AG______CC________
25._GC-03-32-3-11
____GG____AG______CC________
 57 58 59            
_Input profile
TTACTTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._RUQ_6
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._EET_272_[ECU]
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._EET_272_[ECU]
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._EET_272_[ECU]
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._EET_272_[ECU]
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._EET_272_[ECU]
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._EET_272_[ECU]
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._EET_272_[ECU]
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._EET_272_[ECU]
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._EET_272_[ECU]
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._GC-03-032-3-11
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._GC-03-032-3-11
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._GC-03-032-3-11
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._GC-03-032-3-11
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._GC-03-032-3-11
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._GC-03-032-3-11
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._GC-03-032-3-11
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._GC-03-032-3-11
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._EET_272_[ECU]
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._EET_272_[ECU]
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._RUQ_6
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._MITC-000381
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._GC-03-032-3-11
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._GC-03-032-3-11
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._GC-03-32-3-11
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: EET_272_[ECU] RUQ_6

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

1._EET_272_[ECU] RUQ_6

96.4 %
14 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._EET_272_[ECU]

95.8 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 9
 Dapeng Zhang, 2016

3._EET_272_[ECU]

95.8 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 5
 Dapeng Zhang, 2016

4._EET_272_[ECU]

95.8 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 10
 Dapeng Zhang, 2016

5._EET_272_[ECU]

95.8 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 13
 Dapeng Zhang, 2016

6._EET_272_[ECU]

95.8 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 16
 Dapeng Zhang, 2016

7._EET_272_[ECU]

95.8 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 1 > FP
 Dapeng Zhang, 2016

8._EET_272_[ECU]

95.8 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 2 > FP
 Dapeng Zhang, 2016

9._EET_272_[ECU]

95.8 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 3 > FP
 Dapeng Zhang, 2016

10._EET_272_[ECU]

92.9 %
7 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 3 X16 Y8
 Dapeng Zhang, 2016

11._EET_272_[ECU] GC-03-032-3-11

87.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

12._EET_272_[ECU] GC-03-032-3-11

87.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

13._EET_272_[ECU] GC-03-032-3-11

87.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

14._EET_272_[ECU] GC-03-032-3-11

87.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

15._EET_272_[ECU] GC-03-032-3-11

87.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

16._EET_272_[ECU] GC-03-032-3-11

87.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

17._EET_272_[ECU] GC-03-032-3-11

87.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

18._EET_272_[ECU] GC-03-032-3-11

87.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

19._EET_272_[ECU]

62.5 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 7
 Dapeng Zhang, 2016

20._EET_272_[ECU]

62.5 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 8
 Dapeng Zhang, 2016

21._EET_272_[ECU] RUQ_6

59.4 %
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

22._EET_272_[ECU] MITC-000381

59.4 %
16 shared markers

USDA-SHRS, United States of America
 Mars, 2018

23._EET_272_[ECU] GC-03-032-3-11

57.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

24._EET_272_[ECU] GC-03-032-3-11

57.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

25._EET_272_[ECU] GC-03-32-3-11

53.1 %
16 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 3, Rep: 11, Tree: 7
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1527 2TcSNP1524 3TcSNP1458 4TcSNP1404 5TcSNP1401
6TcSNP1293 7TcSNP1275 8TcSNP1253 9TcSNP1237 10TcSNP1230
11TcSNP1205 12TcSNP1144 13TcSNP1112 14TcSNP1062 15TcSNP1053
16TcSNP1019 17TcSNP1010 18TcSNP999 19TcSNP998 20TcSNP945
21TcSNP899 22TcSNP872 23TcSNP836 24TcSNP835 25TcSNP823
26TcSNP800 27TcSNP739 28TcSNP731 29TcSNP723 30TcSNP702
31TcSNP660 32TcSNP645 33TcSNP644 34TcSNP642 35TcSNP640
36TcSNP602 37TcSNP589 38TcSNP577 39TcSNP546 40TcSNP529
41TcSNP522 42TcSNP519 43TcSNP421 44TcSNP363 45TcSNP329
46TcSNP305 47TcSNP290 48TcSNP230 49TcSNP194 50TcSNP189
51TcSNP176 52TcSNP144 53TcSNP143 54TcSNP131 55TcSNP52
56TcSNP49 57TcSNP33 58TcSNP19 59TcSNP13