SNP Profiles of PA 70 [PER] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AT	TT	GG	GG	GG	TT	GG	TT	CT	AA	GG	CC	TT	AG
1._RUQ_33	__	__	GG	__	__	__	__	TT	__	__	__	CC	__	AG
2._PA_70_[PER]	__	__	GG	__	__	__	__	TT	__	__	__	__	__	AG
3._RUQ_33	__	__	GG	__	__	__	__	TT	__	__	__	__	__	__
4._PA_70_[PER]	__	__	GG	__	__	__	__	TT	__	__	__	CC	__	AG
5._GC-04-053-3-17	__	__	GG	__	__	__	__	TT	__	__	__	CC	__	AG
6._PA70[PER]	__	__	CC	__	__	__	__	__	__	__	__	__	__	__
7._GC-04-53-3-17	__	__	CC	__	__	__	__	AA	__	__	__	__	__	AG
8._RUQ_33	__	__	CC	__	__	__	__	AA	__	__	__	__	__	AG
9._MITC-000025	__	__	CC	__	__	__	__	AA	__	__	__	__	__	AG
10._MITC-000026	__	__	CC	__	__	__	__	AA	__	__	__	__	__	AG
11._GC-04-053-3-17	__	__	GG	__	__	__	__	TT	__	__	__	TT	__	AA
12._PA_70_[PER]	__	__	GG	__	__	__	__	TT	__	__	__	TT	__	AA
13._PA_70_[PER]_Fld#_185_Plt#_1	__	__	CG	__	__	__	__	AA	__	__	__	__	__	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AA	TT	CT	AG	CC	GG	GG	TT	AA	AA	TT	CC	GG
1._RUQ_33	__	__	__	__	AG	__	__	GG	__	__	__	__	__	__
2._PA_70_[PER]	__	__	__	__	AG	__	__	GG	__	__	__	__	__	__
3._RUQ_33	__	__	__	CC	AG	__	GG	GG	__	__	AA	__	__	GG
4._PA_70_[PER]	__	__	__	__	AG	__	__	GG	__	__	__	__	__	__
5._GC-04-053-3-17	__	__	__	CT	AG	__	GG	GG	CC	__	AA	__	__	GG
6._PA70[PER]	__	__	__	__	__	__	__	CC	__	__	__	__	__	__
7._GC-04-53-3-17	__	__	__	__	AG	__	GG	CC	GG	__	AA	__	__	GG
8._RUQ_33	__	__	__	__	AG	__	GG	CC	GG	__	AA	__	__	GG
9._MITC-000025	__	__	__	__	AG	__	GG	CC	GG	__	AA	__	__	GG
10._MITC-000026	__	__	__	__	AG	__	GG	CC	GG	__	AA	__	__	GG
11._GC-04-053-3-17	__	__	__	CT	AG	__	AA	CG	GG	__	AC	__	__	GG
12._PA_70_[PER]	__	__	__	__	AG	__	__	CG	__	__	__	__	__	__
13._PA_70_[PER]_Fld#_185_Plt#_1	__	__	__	__	AG	__	GG	CC	CC	__	AA	__	__	AG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	GG	CC	CC	AA	CC	AG	CT	CT	AC	AT	CG	AA	AA	CC
1._RUQ_33	GG	__	__	AA	__	__	__	__	AC	__	CG	__	AA	__
2._PA_70_[PER]	GG	__	__	AA	__	__	__	__	AC	__	CG	__	AA	__
3._RUQ_33	GG	CC	__	__	__	__	__	CT	AC	__	CG	__	AA	__
4._PA_70_[PER]	GG	__	__	AG	__	__	__	__	AC	__	CG	__	AA	__
5._GC-04-053-3-17	GG	CC	__	AG	__	__	__	CT	AC	__	CG	__	AA	__
6._PA70[PER]	__	__	__	__	__	__	__	CT	AC	__	CG	__	__	__
7._GC-04-53-3-17	CC	__	__	__	__	__	__	AG	AC	__	CG	__	AA	__
8._RUQ_33	CC	__	__	__	__	__	__	AG	AC	__	CG	__	AA	__
9._MITC-000025	CC	__	__	__	__	__	__	AG	AC	__	CG	__	AA	__
10._MITC-000026	CC	__	__	__	__	__	__	AG	AC	__	CG	__	AA	__
11._GC-04-053-3-17	GT	CC	__	GG	__	__	__	CT	AC	__	CC	__	CC	__
12._PA_70_[PER]	GT	__	__	GG	__	__	__	__	AC	__	CC	__	CC	__
13._PA_70_[PER]_Fld#_185_Plt#_1	CC	__	__	__	__	__	__	GG	CC	__	GG	__	AA	__

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	AA	CC	AA	GG	AA	TT	AG	GG	GG	CC	AA	AA	GT	GG
1._RUQ_33	__	__	__	__	__	__	AG	__	__	__	AA	__	__	__
2._PA_70_[PER]	__	__	__	__	__	__	AG	__	__	__	AA	__	__	__
3._RUQ_33	__	__	__	GG	__	__	AG	__	__	__	AA	__	__	__
4._PA_70_[PER]	__	__	__	__	__	__	AG	__	__	__	AA	__	__	__
5._GC-04-053-3-17	__	__	__	GG	__	__	AG	__	__	__	AA	__	__	__
6._PA70[PER]	__	__	__	__	__	__	AG	__	__	__	AA	__	__	__
7._GC-04-53-3-17	__	__	__	GG	__	__	AG	__	__	__	AA	__	__	__
8._RUQ_33	__	__	__	GG	__	__	AG	__	__	__	AA	__	__	__
9._MITC-000025	__	__	__	GG	__	__	AG	__	__	__	AA	__	__	__
10._MITC-000026	__	__	__	GG	__	__	AG	__	__	__	AA	__	__	__
11._GC-04-053-3-17	__	__	__	AG	__	__	AG	__	__	__	AA	__	__	__
12._PA_70_[PER]	__	__	__	__	__	__	AG	__	__	__	AA	__	__	__
13._PA_70_[PER]_Fld#_185_Plt#_1	__	__	__	GG	__	__	AG	__	__	__	AA	__	__	__

	57	58	59	60
_Input profile	CC	CC	CC	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._RUQ_33	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._PA_70_[PER]	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._RUQ_33	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._PA_70_[PER]	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._GC-04-053-3-17	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._PA70[PER]	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._GC-04-53-3-17	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._RUQ_33	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._MITC-000025	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._MITC-000026	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._GC-04-053-3-17	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._PA_70_[PER]	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._PA_70_[PER]_Fld#_185_Plt#_1	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: PA_70_[PER] RUQ_33

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

1._PA_70_[PER] RUQ_33

identical
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

2._PA_70_[PER]

identical
12 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D634

Dapeng Zhang, 2016

3._PA_70_[PER] RUQ_33

97.1 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

4._PA_70_[PER]

96.2 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4317 6 > FP

Dapeng Zhang, 2016

5._PA_70_[PER] GC-04-053-3-17

92.9 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP2 (verde)

6._PA_70_[PER] PA70[PER]

71.4 %
7 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam

Location: CEFORTT

Jocelyn De Wever et al., 2019

7._PA_70_[PER] GC-04-53-3-17

64.7 %
17 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 4, Block: 3, Rep: 17, Tree: 6 > FP2 (verde)

Notes: MCCS_Structure_refs_above_0.9membership

8._PA_70_[PER] RUQ_33

64.7 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

9._PA_70_[PER] MITC-000025

64.7 %
17 shared markers

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USDA-SHRS, United States of America

10._PA_70_[PER] MITC-000026

64.7 %
17 shared markers

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USDA-SHRS, United States of America

11._PA_70_[PER] GC-04-053-3-17

61.9 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP1 (roxo)

12._PA_70_[PER]

61.5 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4317 2 > FP

Dapeng Zhang, 2016

13._PA_70_[PER] PA_70_[PER]_Fld#_185_Plt#_1

55.9 %
17 shared markers

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USDA-TARS, United States of America

Location: Field: 185, Tree: 1

Key to SNP Markers

Key to SNP Markers

1	TcSNP1527	2	TcSNP1524	3	TcSNP1458	4	TcSNP1404	5	TcSNP1401
6	TcSNP1293	7	TcSNP1275	8	TcSNP1253	9	TcSNP1237	10	TcSNP1230
11	TcSNP1205	12	TcSNP1144	13	TcSNP1112	14	TcSNP1062	15	TcSNP1053
16	TcSNP1019	17	TcSNP1010	18	TcSNP999	19	TcSNP998	20	TcSNP945
21	TcSNP899	22	TcSNP872	23	TcSNP836	24	TcSNP835	25	TcSNP823
26	TcSNP800	27	TcSNP739	28	TcSNP731	29	TcSNP723	30	TcSNP702
31	TcSNP660	32	TcSNP645	33	TcSNP644	34	TcSNP642	35	TcSNP640
36	TcSNP602	37	TcSNP591	38	TcSNP589	39	TcSNP577	40	TcSNP546
41	TcSNP529	42	TcSNP522	43	TcSNP519	44	TcSNP421	45	TcSNP363
46	TcSNP329	47	TcSNP305	48	TcSNP290	49	TcSNP230	50	TcSNP194
51	TcSNP189	52	TcSNP176	53	TcSNP144	54	TcSNP143	55	TcSNP131
56	TcSNP52	57	TcSNP49	58	TcSNP33	59	TcSNP19	60	TcSNP13