SNP Profiles of PA 137 [PER]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCTCCGGGGTTGGTTCCAAGGCCCTGG
1._RUQ_1081
TTCTCCGGGGTTGGTT__AAGGCCCTGG
2._RUQ_1081
____CC________TT____________
3._RUQ_1081
____CC________TT______CC__GG
4._RUQ_36
____CC________TT______CC__GG
5._RUQ_1081
____CC________TT______CC__GG
6._PA_137_[PER]
____CC________TT______CC__GG
7._PA_137_[PER]
____CC________TT______CC__GG
8._PA_137_[PER]
____CC________TT__________GG
9._PA_137_[PER]
____CC________TT__________GG
10._PA_137_[PER]
____CC________TT______CC__GG
11._PA_137_[PER]
____CC________TT______CC__GG
12._PA_137_[PER]
____CC________TT______CC__GG
13._PA_137_[PER]
____CC________TT______CC__GG
14._PA_137_[PER]
____CC________TT______CC__GG
15._PA_137_[PER]
____CC________TT______CC__GG
16._PA_137_[PER]
____CC________TT______CC__GG
17._PA_137_[PER]
____CC________TT______CC__GG
18._PA_137_[PER]
____CC________TT______CC__GG
19._PA_137_[PER]
____CC________TT______CC__GG
20._GC-05-009-1-09
____CC________TT______CC__GG
21._GC-05-009-1-09
____CC________TT______CC__GG
22._GC-05-009-1-09
____CC________TT______CC__GG
23._GC-05-009-1-09
____CC________TT______CC__GG
24._GC-05-009-1-09
____CC________TT______CC__GG
25._GC-05-117-3-19
____CC________TT______CC__GG
26._GC-05-117-3-19
____CC________TT______CC__GG
27._GC-05-117-3-19
____CC________TT______CC__GG
28._GC-05-117-3-19
____CC________TT______CC__GG
29._GC-05-117-3-19
____CC________TT______CC__GG
30._RUQ_36
____________________________
31._RUQ_36
____CG________GT__________GG
32._PA137[PER]
____GG______________________
33._RUQ_36
____GG________AA__________GG
34._MITC-000400
____GG________AA__________GG
35._PA_137_[PER]_Fld#_201_Plt#_2
____GG________AA__________GG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CTAATTTTAGCCGGGGTTAAAATTCTGG
1._RUQ_1081
CTAATTTTAGCCGGGGTTAAAATTCTGG
2._RUQ_1081
______TTAG____GG____AA____GG
3._RUQ_1081
________AG____GG____________
4._RUQ_36
________AG____GG____________
5._RUQ_1081
________AG____GG____________
6._PA_137_[PER]
________AG____GG____________
7._PA_137_[PER]
________AG____GGTT__________
8._PA_137_[PER]
________AG____GG____________
9._PA_137_[PER]
________AG____GG____________
10._PA_137_[PER]
________AG____GG____________
11._PA_137_[PER]
________AG____GG____________
12._PA_137_[PER]
________AG____GG____________
13._PA_137_[PER]
________AG____GG____________
14._PA_137_[PER]
________AG____GG____________
15._PA_137_[PER]
________AG____GG____________
16._PA_137_[PER]
________AG____GG____________
17._PA_137_[PER]
________AG____GG____________
18._PA_137_[PER]
________AG____GG____________
19._PA_137_[PER]
________AG____GG____________
20._GC-05-009-1-09
______TTAG__GGGGCG__AA____GG
21._GC-05-009-1-09
______TTAG__GGGGCG__AA____GG
22._GC-05-009-1-09
______TTAG__GGGGCG__AA____GG
23._GC-05-009-1-09
______TTAG__GGGGCG__AA____GG
24._GC-05-009-1-09
______TTAG__GGGGCG__AA____GG
25._GC-05-117-3-19
______TTAG__GGGGCG__AA____GG
26._GC-05-117-3-19
______TTAG__GGGGCG__AA____GG
27._GC-05-117-3-19
______TTAG__GGGGCG__AA____GG
28._GC-05-117-3-19
______TTAG__GGGGCG__AA____GG
29._GC-05-117-3-19
______TTAG__GGGGCG__AA____GG
30._RUQ_36
______CTAG__GG______________
31._RUQ_36
________AG__________________
32._PA137[PER]
______________CC____________
33._RUQ_36
________AG__GGCCCG__AA____GG
34._MITC-000400
________AG__GGCCCG__AA____GG
35._PA_137_[PER]_Fld#_201_Plt#_2
________AG__GGCCCG__AA____GG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGCCCCAACCGGCCTTCCAACGAGAACC
1._RUQ_1081
GGCCCCAACCGGCCTTCCAACGAGACCC
2._RUQ_1081
GGCC__________TTCC__CG__AC__
3._RUQ_1081
GG____AA________CC__CG__AC__
4._RUQ_36
GG____AA________CC__CG__AC__
5._RUQ_1081
GG____AA________CC__CG__AC__
6._PA_137_[PER]
GG____AA________CC__CG__AC__
7._PA_137_[PER]
______AA________CC__CG__AC__
8._PA_137_[PER]
GG____AA________CC__CG__AC__
9._PA_137_[PER]
GG____AA________CC__CG__AC__
10._PA_137_[PER]
GG____AG________CC__CG__AC__
11._PA_137_[PER]
GG____AG________CC__CG__AC__
12._PA_137_[PER]
GG____AG________CC__CG__AC__
13._PA_137_[PER]
GG____AG________CC__CG__AC__
14._PA_137_[PER]
GG____AG________CC__CG__AC__
15._PA_137_[PER]
GG____AG________CC__CG__AC__
16._PA_137_[PER]
GG____AG________CC__CG__AC__
17._PA_137_[PER]
GG____AG________CC__CG__AC__
18._PA_137_[PER]
GG____AG________CC__CG__AC__
19._PA_137_[PER]
GG____AG________CC__CG__AC__
20._GC-05-009-1-09
GGCC__AG______TTCC__CG__AC__
21._GC-05-009-1-09
GGCC__AG______TTCC__CG__AC__
22._GC-05-009-1-09
GGCC__AG______TTCC__CG__AC__
23._GC-05-009-1-09
GGCC__AG______TTCC__CG__AC__
24._GC-05-009-1-09
GGCC__AG______TTCC__CG__AC__
25._GC-05-117-3-19
GGCC__AG______TTCC__CG__AC__
26._GC-05-117-3-19
GGCC__AG______TTCC__CG__AC__
27._GC-05-117-3-19
GGCC__AG______TTCC__CG__AC__
28._GC-05-117-3-19
GGCC__AG______TTCC__CG__AC__
29._GC-05-117-3-19
GGCC__AG______TTCC__CG__AC__
30._RUQ_36
GG__________________CG__AC__
31._RUQ_36
GT____AA____________CG__AC__
32._PA137[PER]
______________TTCC__CG______
33._RUQ_36
CC____________AACC__CG__AC__
34._MITC-000400
CC____________AACC__CG__AC__
35._PA_137_[PER]_Fld#_201_Plt#_2
CC____________AACC__CG__AC__
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AACTAAGGAATTAGGGGGCCACAAGGGG
1._RUQ_1081
AACTAAGGAATTAGGGGGCCACAAGGGG
2._RUQ_1081
______GG____AG______AC______
3._RUQ_1081
____________AG______AC______
4._RUQ_36
____________AG______AC______
5._RUQ_1081
____________AG______AC______
6._PA_137_[PER]
____________AG______AC______
7._PA_137_[PER]
____________AG______AC______
8._PA_137_[PER]
____________AG______AC______
9._PA_137_[PER]
____________AG______AC______
10._PA_137_[PER]
____________AG______AC______
11._PA_137_[PER]
____________AG______AC______
12._PA_137_[PER]
____________AG______AC______
13._PA_137_[PER]
____________AG______AC______
14._PA_137_[PER]
____________AG______AC______
15._PA_137_[PER]
____________AG______AC______
16._PA_137_[PER]
____________AG______AC______
17._PA_137_[PER]
____________AG______AC______
18._PA_137_[PER]
____________AG______AC______
19._PA_137_[PER]
____________AG______AC______
20._GC-05-009-1-09
______GG____AG______AC______
21._GC-05-009-1-09
______GG____AG______AC______
22._GC-05-009-1-09
______GG____AG______AC______
23._GC-05-009-1-09
______GG____AG______AC______
24._GC-05-009-1-09
______GG____AG______AC______
25._GC-05-117-3-19
______GG____AG______AC______
26._GC-05-117-3-19
______GG____AG______AC______
27._GC-05-117-3-19
______GG____AG______AC______
28._GC-05-117-3-19
______GG____AG______AC______
29._GC-05-117-3-19
______GG____AG______AC______
30._RUQ_36
____________AG______AC______
31._RUQ_36
____________AG______AC______
32._PA137[PER]
____________AG______AC______
33._RUQ_36
______GG____AG______AC______
34._MITC-000400
______GG____AG______AC______
35._PA_137_[PER]_Fld#_201_Plt#_2
______GG____AG______AC______
 57 58 59 60           
_Input profile
CCCTCCTTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._RUQ_1081
CCCTCCTTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._RUQ_1081
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._RUQ_1081
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._RUQ_36
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._RUQ_1081
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._PA_137_[PER]
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._PA_137_[PER]
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._PA_137_[PER]
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._PA_137_[PER]
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._PA_137_[PER]
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._PA_137_[PER]
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._PA_137_[PER]
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._PA_137_[PER]
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._PA_137_[PER]
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._PA_137_[PER]
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._PA_137_[PER]
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._PA_137_[PER]
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._PA_137_[PER]
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._PA_137_[PER]
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._GC-05-009-1-09
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._GC-05-009-1-09
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._GC-05-009-1-09
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._GC-05-009-1-09
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._GC-05-009-1-09
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._GC-05-117-3-19
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
26._GC-05-117-3-19
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
27._GC-05-117-3-19
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
28._GC-05-117-3-19
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
29._GC-05-117-3-19
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
30._RUQ_36
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
31._RUQ_36
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
32._PA137[PER]
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
33._RUQ_36
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
34._MITC-000400
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
35._PA_137_[PER]_Fld#_201_Plt#_2
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: PA_137_[PER] RUQ_36

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

1._PA_137_[PER] RUQ_1081

99.2 %
59 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

2._PA_137_[PER] RUQ_1081

96.9 %
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._PA_137_[PER] RUQ_1081

96.2 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

4._PA_137_[PER] RUQ_36

96.2 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

5._PA_137_[PER] RUQ_1081

96.2 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

6._PA_137_[PER]

96.2 %
13 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row 7 C0181 28
 Dapeng Zhang, 2016

7._PA_137_[PER]

96.2 %
13 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D274 T1
 Dapeng Zhang, 2014

8._PA_137_[PER]

95.8 %
12 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D430
 Dapeng Zhang, 2016

9._PA_137_[PER]

95.8 %
12 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D274 T1
 Dapeng Zhang, 2016

10._PA_137_[PER]

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 3
 Dapeng Zhang, 2016

11._PA_137_[PER]

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 2
 Dapeng Zhang, 2016

12._PA_137_[PER]

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 4
 Dapeng Zhang, 2016

13._PA_137_[PER]

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 5
 Dapeng Zhang, 2016

14._PA_137_[PER]

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 1 > FP
 Dapeng Zhang, 2016

15._PA_137_[PER]

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 3 > FP
 Dapeng Zhang, 2016

16._PA_137_[PER]

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 2
 Dapeng Zhang, 2016

17._PA_137_[PER]

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 4
 Dapeng Zhang, 2016

18._PA_137_[PER]

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 5
 Dapeng Zhang, 2016

19._PA_137_[PER]

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 1 > FP
 Dapeng Zhang, 2016

20._PA_137_[PER] GC-05-009-1-09

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

21._PA_137_[PER] GC-05-009-1-09

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

22._PA_137_[PER] GC-05-009-1-09

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

23._PA_137_[PER] GC-05-009-1-09

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

24._PA_137_[PER] GC-05-009-1-09

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

25._PA_137_[PER] GC-05-117-3-19

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP3
 Mars, 2018

26._PA_137_[PER] GC-05-117-3-19

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

27._PA_137_[PER] GC-05-117-3-19

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

28._PA_137_[PER] GC-05-117-3-19

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

29._PA_137_[PER] GC-05-117-3-19

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

30._PA_137_[PER] RUQ_36

87.5 %
8 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

31._PA_137_[PER] RUQ_36

80 %
10 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

32._PA_137_[PER] PA137[PER]

71.4 %
7 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

33._PA_137_[PER] RUQ_36

61.8 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

34._PA_137_[PER] MITC-000400

61.8 %
17 shared markers

USDA-SHRS, United States of America
 Mars, 2018

35._PA_137_[PER] PA_137_[PER]_Fld#_201_Plt#_2

61.8 %
17 shared markers

USDA-TARS, United States of America
Location: Field: 201, Tree: 2
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1527 2TcSNP1524 3TcSNP1458 4TcSNP1404 5TcSNP1401
6TcSNP1293 7TcSNP1275 8TcSNP1253 9TcSNP1237 10TcSNP1230
11TcSNP1205 12TcSNP1144 13TcSNP1112 14TcSNP1062 15TcSNP1053
16TcSNP1019 17TcSNP1010 18TcSNP999 19TcSNP998 20TcSNP945
21TcSNP899 22TcSNP872 23TcSNP836 24TcSNP835 25TcSNP823
26TcSNP800 27TcSNP739 28TcSNP731 29TcSNP723 30TcSNP702
31TcSNP660 32TcSNP645 33TcSNP644 34TcSNP642 35TcSNP640
36TcSNP602 37TcSNP591 38TcSNP589 39TcSNP577 40TcSNP546
41TcSNP529 42TcSNP522 43TcSNP519 44TcSNP421 45TcSNP363
46TcSNP329 47TcSNP305 48TcSNP290 49TcSNP230 50TcSNP194
51TcSNP189 52TcSNP176 53TcSNP144 54TcSNP143 55TcSNP131
56TcSNP52 57TcSNP49 58TcSNP33 59TcSNP19 60TcSNP13