SNP Profiles of PA 175 [PER] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AA	GG	CC	CT	AG	CC	AA	TT	CT	AA	CC	AG	GG
1._RUQ_37	__	__	__	CC	__	AG	__	__	__	__	AA	__	__	GG
2._PA_175_[PER]	__	__	__	CC	__	AG	__	__	__	__	AA	__	__	GG
3._PA_175_[PER]	__	__	__	CC	__	AG	__	__	__	__	AA	__	__	GG
4._RUQ_37	__	__	__	__	__	__	__	__	__	CC	AA	__	__	GG
5._PA_175_[PER]	__	__	__	CC	__	AG	__	__	__	__	AA	__	__	GG
6._PA_175_[PER]	__	__	__	CC	__	AG	__	__	__	__	AA	__	__	GG
7._PA_175_[PER]	__	__	__	CC	__	AG	__	__	__	__	AA	__	__	GG
8._PA_175_[PER]	__	__	__	CC	__	AG	__	__	__	__	AA	__	__	GG
9._NA	__	__	__	CC	__	AG	__	__	__	CT	AA	__	AG	GG
10._NA	__	__	__	CC	__	AG	__	__	__	CT	AA	__	AG	GG
11._NA	__	__	__	CC	__	AG	__	__	__	CT	AA	__	AG	GG
12._NA	__	__	__	CC	__	AG	__	__	__	CT	AA	__	AG	GG
13._-	__	__	__	__	__	AG	__	__	__	__	AA	__	AG	CC
14._RUQ_37	__	__	__	__	__	AG	__	__	__	__	AA	__	AG	CC
15._MITC-000016	__	__	__	__	__	AG	__	__	__	__	AA	__	AG	CC

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	AA	AA	TT	CT	AG	GG	CT	GG	AA	CC	AG	CC	TT
1._RUQ_37	__	__	__	__	__	__	GG	__	__	AA	__	__	__	__
2._PA_175_[PER]	__	__	__	__	__	__	GG	__	__	AA	__	__	__	__
3._PA_175_[PER]	TT	__	__	__	__	__	__	__	__	AA	__	__	__	__
4._RUQ_37	__	__	AA	__	__	AG	GG	CT	__	__	__	__	__	TT
5._PA_175_[PER]	__	__	__	__	__	__	GG	__	__	GG	__	__	__	__
6._PA_175_[PER]	__	__	__	__	__	__	GG	__	__	GG	__	__	__	__
7._PA_175_[PER]	__	__	__	__	__	__	GG	__	__	GG	__	__	__	__
8._PA_175_[PER]	__	__	__	__	__	__	GG	__	__	GG	__	__	__	__
9._NA	CG	__	AA	__	__	AG	GG	CC	__	GG	__	__	__	TT
10._NA	CG	__	AA	__	__	AG	GG	CC	__	GG	__	__	__	TT
11._NA	CG	__	AA	__	__	AG	GG	CC	__	GG	__	__	__	TT
12._NA	CG	__	AA	__	__	AG	GG	CC	__	GG	__	__	__	TT
13._-	CG	__	AA	__	__	AG	CC	__	__	__	__	__	__	AA
14._RUQ_37	CG	__	AA	__	__	AG	CC	__	__	__	__	__	__	AA
15._MITC-000016	CG	__	AA	__	__	AG	CC	__	__	__	__	__	__	AA

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AC	AA	CG	AG	AA	CC	AC	CT	AA	GG	AA	CT	GG	GG
1._RUQ_37	AC	__	CG	__	AC	__	__	__	__	__	__	__	GG	__
2._PA_175_[PER]	AC	__	CG	__	AC	__	__	__	__	__	__	__	GG	__
3._PA_175_[PER]	AC	__	CG	__	AC	__	__	__	__	__	__	__	GG	__
4._RUQ_37	AC	__	CG	__	AC	__	__	__	__	GG	__	__	GG	__
5._PA_175_[PER]	AC	__	CG	__	AC	__	__	__	__	__	__	__	GG	__
6._PA_175_[PER]	AC	__	CG	__	AC	__	__	__	__	__	__	__	GG	__
7._PA_175_[PER]	AC	__	CG	__	AC	__	__	__	__	__	__	__	GG	__
8._PA_175_[PER]	AC	__	CG	__	AC	__	__	__	__	__	__	__	GG	__
9._NA	AC	__	CG	__	AC	__	__	__	__	GG	__	__	GG	__
10._NA	AC	__	CG	__	AC	__	__	__	__	GG	__	__	GG	__
11._NA	AC	__	CG	__	AC	__	__	__	__	GG	__	__	GG	__
12._NA	AC	__	CG	__	AC	__	__	__	__	GG	__	__	GG	__
13._-	AC	__	CG	__	AC	__	__	__	__	GG	__	__	GG	__
14._RUQ_37	AC	__	CG	__	AC	__	__	__	__	GG	__	__	GG	__
15._MITC-000016	AC	__	CG	__	AC	__	__	__	__	GG	__	__	GG	__

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	GG	CC	CC	AA	GG	GG	CC	CT	CC	TT	TT	CT	CG	GG
1._RUQ_37	__	__	CC	__	__	__	__	__	__	__	__	__	CG	__
2._PA_175_[PER]	__	__	CC	__	__	__	__	__	__	__	__	__	CG	__
3._PA_175_[PER]	__	__	CC	__	__	__	__	__	__	__	__	__	CG	__
4._RUQ_37	__	__	CC	__	__	__	__	__	__	__	__	__	CG	__
5._PA_175_[PER]	__	__	CC	__	__	__	__	__	__	__	__	__	CG	__
6._PA_175_[PER]	__	__	CC	__	__	__	__	__	__	__	__	__	CG	__
7._PA_175_[PER]	__	__	CC	__	__	__	__	__	__	__	__	__	CG	__
8._PA_175_[PER]	__	__	CC	__	__	__	__	__	__	__	__	__	CG	__
9._NA	__	__	CC	__	__	__	__	__	__	__	__	__	CG	__
10._NA	__	__	CC	__	__	__	__	__	__	__	__	__	CG	__
11._NA	__	__	CC	__	__	__	__	__	__	__	__	__	CG	__
12._NA	__	__	CC	__	__	__	__	__	__	__	__	__	CG	__
13._-	__	__	CC	__	__	__	__	__	__	__	__	__	CG	__
14._RUQ_37	__	__	CC	__	__	__	__	__	__	__	__	__	CG	__
15._MITC-000016	__	__	CC	__	__	__	__	__	__	__	__	__	CG	__

	57	58	59	60
_Input profile	GG	TT	GG	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._RUQ_37	__	__	__	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._PA_175_[PER]	__	__	__	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._PA_175_[PER]	__	__	__	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._RUQ_37	__	__	__	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._PA_175_[PER]	__	__	__	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._PA_175_[PER]	__	__	__	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._PA_175_[PER]	__	__	__	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._PA_175_[PER]	__	__	__	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._NA	__	__	__	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._NA	__	__	__	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._NA	__	__	__	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._NA	__	__	__	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._-	__	__	__	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._RUQ_37	__	__	__	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._MITC-000016	__	__	__	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: PA_175_[PER] RUQ_37

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

1._PA_175_[PER] RUQ_37

96.2 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

2._PA_175_[PER]

96.2 %
13 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D 738

Dapeng Zhang, 2016

3._PA_175_[PER]

96.2 %
13 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5B F473 T6

Dapeng Zhang, 2014

4._PA_175_[PER] RUQ_37

93.8 %
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

5._PA_175_[PER]

88.5 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8127 5

Dapeng Zhang, 2016

6._PA_175_[PER]

88.5 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8127 8

Dapeng Zhang, 2016

7._PA_175_[PER]

88.5 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8127 9

Dapeng Zhang, 2016

8._PA_175_[PER]

88.5 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8127 12

Dapeng Zhang, 2016

9._PA_175_[PER] NA

85.7 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

10._PA_175_[PER] NA

85.7 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

11._PA_175_[PER] NA

85.7 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

12._PA_175_[PER] NA

85.7 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

13._PA_175_[PER] -

67.6 %
17 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 8, Block: 1, Rep: 27, Tree: 5

Notes: MCCS_Structure_refs_above_0.9membership

14._PA_175_[PER] RUQ_37

67.6 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

15._PA_175_[PER] MITC-000016

67.6 %
17 shared markers

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USDA-SHRS, United States of America

Key to SNP Markers

Key to SNP Markers

1	TcSNP1237	2	TcSNP1230	3	TcSNP1205	4	TcSNP1144	5	TcSNP1112
6	TcSNP1062	7	TcSNP1053	8	TcSNP1019	9	TcSNP1010	10	TcSNP999
11	TcSNP998	12	TcSNP945	13	TcSNP899	14	TcSNP872	15	TcSNP836
16	TcSNP835	17	TcSNP823	18	TcSNP800	19	TcSNP739	20	TcSNP731
21	TcSNP723	22	TcSNP702	23	TcSNP660	24	TcSNP645	25	TcSNP644
26	TcSNP642	27	TcSNP640	28	TcSNP602	29	TcSNP591	30	TcSNP589
31	TcSNP577	32	TcSNP546	33	TcSNP529	34	TcSNP522	35	TcSNP519
36	TcSNP421	37	TcSNP363	38	TcSNP329	39	TcSNP305	40	TcSNP290
41	TcSNP230	42	TcSNP194	43	TcSNP189	44	TcSNP176	45	TcSNP144
46	TcSNP143	47	TcSNP131	48	TcSNP52	49	TcSNP49	50	TcSNP33
51	TcSNP19	52	TcSNP13	53	TcSNP1527	54	TcSNP1524	55	TcSNP1458
56	TcSNP1404	57	TcSNP1401	58	TcSNP1293	59	TcSNP1275	60	TcSNP1253