SNP Profiles of UF 667 View Data

Show/Hide Profiles

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AT	CT	CG	GG	GG	TT	GG	GT	CC	AC	GT	CT	TT	AA
1._UF_667	__	__	CG	__	__	__	__	GT	__	__	__	CT	__	AA
2._RUQ_55	__	__	CG	__	__	__	__	GT	__	__	__	CT	__	AA
3._UF_667	__	__	CG	__	__	__	__	GT	__	__	__	CT	__	AA
4._UF_667	__	__	CG	__	__	__	__	GT	__	__	__	CT	__	AA
5._UF_667	__	__	CG	__	__	__	__	GT	__	__	__	CT	__	AA
6._UF_667	__	__	CG	__	__	__	__	GT	__	__	__	CT	__	AA
7._UF_667	__	__	CG	__	__	__	__	GT	__	__	__	CT	__	AA
8._UF_667	__	__	CG	__	__	__	__	GT	__	__	__	CT	__	AA
9._UF_667	__	__	CG	__	__	__	__	GT	__	__	__	CT	__	AA
10._UF_667	__	__	CG	__	__	__	__	GT	__	__	__	CT	__	AA
11._UF_667	__	__	CG	__	__	__	__	GT	__	__	__	CT	__	AA
12._RUQ_55	__	__	CG	__	__	__	__	GT	__	__	__	__	__	__
13._GC-01-029-2-06	__	__	CG	__	__	__	__	GT	__	__	__	CT	__	AA
14._GC-01-029-2-06	__	__	CG	__	__	__	__	GT	__	__	__	CT	__	AA
15._GC-01-029-2-06	__	__	CG	__	__	__	__	GT	__	__	__	CT	__	AA
16._GC-01-029-2-06	__	__	CG	__	__	__	__	GT	__	__	__	CT	__	AA
17._GC-01-029-2-06	__	__	CG	__	__	__	__	GT	__	__	__	CT	__	AA
18._GC-01-029-2-06	__	__	CG	__	__	__	__	GT	__	__	__	CT	__	AA
19._GC-01-029-2-06	__	__	CG	__	__	__	__	GT	__	__	__	CT	__	AA
20._GC-01-29-2-6	__	__	CG	__	__	__	__	AA	__	__	__	__	__	AA
21._RUQ_55	__	__	CG	__	__	__	__	AA	__	__	__	__	__	AA
22._UF_667	__	__	CG	__	__	__	__	TT	__	__	__	CC	__	GG
23._UF_667_Fld#_119_Plt#_1	__	__	CC	__	__	__	__	AA	__	__	__	__	__	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CC	AA	TT	CT	AG	CG	AG	CG	TT	AA	AC	CT	CT	AG
1._UF_667	__	__	__	__	AG	__	__	CG	__	__	__	__	__	__
2._RUQ_55	__	__	__	__	AG	__	__	CG	__	__	__	__	__	__
3._UF_667	__	__	__	__	AG	__	__	CG	__	__	__	__	__	__
4._UF_667	__	__	__	__	AG	__	__	CG	__	__	__	__	__	__
5._UF_667	__	__	__	__	AG	__	__	CG	__	__	__	__	__	__
6._UF_667	__	__	__	__	AG	__	__	CG	__	__	__	__	__	__
7._UF_667	__	__	__	__	AG	__	__	CG	__	__	__	__	__	__
8._UF_667	__	__	__	__	AG	__	__	CG	__	__	__	__	__	__
9._UF_667	__	__	__	__	AG	__	__	CG	__	__	__	__	__	__
10._UF_667	__	__	__	__	AG	__	__	CG	__	__	__	__	__	__
11._UF_667	__	__	__	__	AG	__	__	CG	__	__	__	__	__	__
12._RUQ_55	__	__	__	CC	AG	__	__	CG	__	__	AC	__	__	AG
13._GC-01-029-2-06	__	__	__	CT	AG	__	AG	CG	GG	__	AC	__	__	AG
14._GC-01-029-2-06	__	__	__	CT	AG	__	AG	CG	GG	__	AC	__	__	AG
15._GC-01-029-2-06	__	__	__	CT	AG	__	AG	CG	GG	__	AC	__	__	AG
16._GC-01-029-2-06	__	__	__	CT	AG	__	AG	CG	GG	__	AC	__	__	AG
17._GC-01-029-2-06	__	__	__	CT	AG	__	AG	CG	GG	__	AC	__	__	AG
18._GC-01-029-2-06	__	__	__	CT	AG	__	AG	CG	GG	__	AC	__	__	AG
19._GC-01-029-2-06	__	__	__	CT	AG	__	__	CG	GG	__	AC	__	__	AG
20._GC-01-29-2-6	__	__	__	__	AG	__	AG	CG	CC	__	AC	__	__	AG
21._RUQ_55	__	__	__	__	AG	__	AG	CG	CC	__	AC	__	__	AG
22._UF_667	__	__	__	__	AG	__	__	GG	__	__	__	__	__	__
23._UF_667_Fld#_119_Plt#_1	__	__	__	__	AA	__	GG	GG	CG	__	CC	__	__	GG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	GT	CT	CG	AG	CC	AG	TT	CC	AC	AT	CC	AG	AC	CT
1._UF_667	GT	__	__	AG	__	__	__	__	AC	__	CC	__	CC	__
2._RUQ_55	GT	__	__	AG	__	__	__	__	AC	__	CC	__	CC	__
3._UF_667	GT	__	__	AG	__	__	__	__	AC	__	CC	__	CC	__
4._UF_667	GT	__	__	AG	__	__	__	__	AC	__	CC	__	CC	__
5._UF_667	GT	__	__	GG	__	__	__	__	AC	__	CC	__	CC	__
6._UF_667	GT	__	__	GG	__	__	__	__	AC	__	CC	__	CC	__
7._UF_667	GT	__	__	GG	__	__	__	__	AC	__	CC	__	CC	__
8._UF_667	GT	__	__	GG	__	__	__	__	AC	__	CC	__	CC	__
9._UF_667	GT	__	__	GG	__	__	__	__	AC	__	CC	__	CC	__
10._UF_667	GT	__	__	GG	__	__	__	__	AC	__	CC	__	CC	__
11._UF_667	GT	__	__	GG	__	__	__	__	AC	__	CC	__	CC	__
12._RUQ_55	GT	CT	__	__	__	__	__	CC	AA	__	CC	__	CC	__
13._GC-01-029-2-06	GT	CT	__	GG	__	__	__	CC	AC	__	CC	__	CC	__
14._GC-01-029-2-06	GT	CT	__	GG	__	__	__	CC	AC	__	CC	__	CC	__
15._GC-01-029-2-06	GT	CT	__	GG	__	__	__	CC	AC	__	CC	__	CC	__
16._GC-01-029-2-06	GT	CT	__	GG	__	__	__	CC	AC	__	CC	__	CC	__
17._GC-01-029-2-06	GT	CT	__	GG	__	__	__	CC	AC	__	CC	__	CC	__
18._GC-01-029-2-06	GT	CT	__	GG	__	__	__	CC	AC	__	CC	__	CC	__
19._GC-01-029-2-06	GT	CT	__	GG	__	__	__	CC	AC	__	CC	__	CC	__
20._GC-01-29-2-6	AC	__	__	__	__	__	__	GG	AC	__	CC	__	CC	__
21._RUQ_55	AC	__	__	__	__	__	__	GG	AC	__	CC	__	CC	__
22._UF_667	GG	__	__	AA	__	__	__	__	CC	__	CG	__	AA	__
23._UF_667_Fld#_119_Plt#_1	CC	__	__	__	__	__	__	GG	AC	__	CG	__	AC	__

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	AC	CC	AC	AG	AC	TT	AG	GG	AG	CT	AC	AT	GT	TT
1._UF_667	__	__	__	__	__	__	AG	__	__	__	AC	__	__	__
2._RUQ_55	__	__	__	__	__	__	AG	__	__	__	AC	__	__	__
3._UF_667	__	__	__	__	__	__	AG	__	__	__	AC	__	__	__
4._UF_667	__	__	__	__	__	__	AG	__	__	__	AC	__	__	__
5._UF_667	__	__	__	__	__	__	AG	__	__	__	AC	__	__	__
6._UF_667	__	__	__	__	__	__	AG	__	__	__	AC	__	__	__
7._UF_667	__	__	__	__	__	__	AG	__	__	__	AC	__	__	__
8._UF_667	__	__	__	__	__	__	AG	__	__	__	AC	__	__	__
9._UF_667	__	__	__	__	__	__	AG	__	__	__	AC	__	__	__
10._UF_667	__	__	__	__	__	__	AG	__	__	__	AC	__	__	__
11._UF_667	__	__	__	__	__	__	AG	__	__	__	AC	__	__	__
12._RUQ_55	__	__	__	AG	__	__	AG	__	__	__	AC	__	__	__
13._GC-01-029-2-06	__	__	__	AG	__	__	AG	__	__	__	AC	__	__	__
14._GC-01-029-2-06	__	__	__	AG	__	__	AG	__	__	__	AC	__	__	__
15._GC-01-029-2-06	__	__	__	AG	__	__	AG	__	__	__	AC	__	__	__
16._GC-01-029-2-06	__	__	__	AG	__	__	AG	__	__	__	AC	__	__	__
17._GC-01-029-2-06	__	__	__	AG	__	__	AG	__	__	__	AC	__	__	__
18._GC-01-029-2-06	__	__	__	AG	__	__	AG	__	__	__	AC	__	__	__
19._GC-01-029-2-06	__	__	__	AG	__	__	AG	__	__	__	AC	__	__	__
20._GC-01-29-2-6	__	__	__	AG	__	__	AG	__	__	__	AC	__	__	__
21._RUQ_55	__	__	__	AG	__	__	AG	__	__	__	AC	__	__	__
22._UF_667	__	__	__	__	__	__	AG	__	__	__	AC	__	__	__
23._UF_667_Fld#_119_Plt#_1	__	__	__	AA	__	__	AA	__	__	__	CC	__	__	__

	57	58	59	60
_Input profile	CC	CT	AC	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._UF_667	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._RUQ_55	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._UF_667	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._UF_667	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._UF_667	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._UF_667	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._UF_667	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._UF_667	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._UF_667	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._UF_667	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._UF_667	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._RUQ_55	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._GC-01-029-2-06	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._GC-01-029-2-06	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._GC-01-029-2-06	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
16._GC-01-029-2-06	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
17._GC-01-029-2-06	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
18._GC-01-029-2-06	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
19._GC-01-029-2-06	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
20._GC-01-29-2-6	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
21._RUQ_55	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
22._UF_667	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
23._UF_667_Fld#_119_Plt#_1	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: UF_667 RUQ_55

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

1._UF_667

96.2 %
13 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

2._UF_667 RUQ_55

96.2 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

3._UF_667

96.2 %
13 shared markers

View View all Clone Any

Malaysian Cocoa Board (MCB), Malaysia

Location: C0244

Dapeng Zhang, 2016

4._UF_667

96.2 %
13 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B F466 T2

Dapeng Zhang, 2016

5._UF_667

92.3 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1206 10

Dapeng Zhang, 2016

6._UF_667

92.3 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1206 5 > FP

Dapeng Zhang, 2016

7._UF_667

92.3 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1206 11 > F

Dapeng Zhang, 2016

8._UF_667

92.3 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1206 1 > FP

Dapeng Zhang, 2016

9._UF_667

92.3 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1206 7

Dapeng Zhang, 2016

10._UF_667

92.3 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1206 3

Dapeng Zhang, 2016

11._UF_667

92.3 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1206 2

Dapeng Zhang, 2016

12._UF_667 RUQ_55

90.6 %
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

13._UF_667 GC-01-029-2-06

90.5 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11 > FP4

14._UF_667 GC-01-029-2-06

90.5 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

15._UF_667 GC-01-029-2-06

90.5 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

16._UF_667 GC-01-029-2-06

90.5 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP2

17._UF_667 GC-01-029-2-06

90.5 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

18._UF_667 GC-01-029-2-06

90.5 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

19._UF_667 GC-01-029-2-06

90 %
20 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

20._UF_667 GC-01-29-2-6

73.5 %
17 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 2, Rep: 6, Tree: 1 > FP1

Notes: Brazil_Selections_Poss_grandparent

21._UF_667 RUQ_55

73.5 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

22._UF_667

61.5 %
13 shared markers

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Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia

Location: KW 292 I-042

Dapeng Zhang, 2016

23._UF_667 UF_667_Fld#_119_Plt#_1

44.1 %
17 shared markers

View View all Clone Any

USDA-TARS, United States of America

Location: Field: 119, Tree: 1

Key to SNP Markers

Key to SNP Markers

1	TcSNP1527	2	TcSNP1524	3	TcSNP1458	4	TcSNP1404	5	TcSNP1401
6	TcSNP1293	7	TcSNP1275	8	TcSNP1253	9	TcSNP1237	10	TcSNP1230
11	TcSNP1205	12	TcSNP1144	13	TcSNP1112	14	TcSNP1062	15	TcSNP1053
16	TcSNP1019	17	TcSNP1010	18	TcSNP999	19	TcSNP998	20	TcSNP945
21	TcSNP899	22	TcSNP872	23	TcSNP836	24	TcSNP835	25	TcSNP823
26	TcSNP800	27	TcSNP739	28	TcSNP731	29	TcSNP723	30	TcSNP702
31	TcSNP660	32	TcSNP645	33	TcSNP644	34	TcSNP642	35	TcSNP640
36	TcSNP602	37	TcSNP591	38	TcSNP589	39	TcSNP577	40	TcSNP546
41	TcSNP529	42	TcSNP522	43	TcSNP519	44	TcSNP421	45	TcSNP363
46	TcSNP329	47	TcSNP305	48	TcSNP290	49	TcSNP230	50	TcSNP194
51	TcSNP189	52	TcSNP176	53	TcSNP144	54	TcSNP143	55	TcSNP131
56	TcSNP52	57	TcSNP49	58	TcSNP33	59	TcSNP19	60	TcSNP13