SNP Profiles of GU 221/C   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AATTGGGGAATTGGTTTTAAGTCCTTGG
1._RUQ_200
AATTGGGGAATTGGTT__AAGTCCTTGG
2._RUQ_200
____GG________TT____________
3._RUQ_200
____GG________TT______CC__GG
4._GU_221_/C
____GG________TT______CC__GG
5._GU_221_/C
____GG________TT______CC__GG
6._GU_221_/C
____GG________TT______CC__GG
7._GU_221_/C
____GG________TT______CC__GG
8._GU_221_/C
____GG________TT______CC__GG
9._GU_221_/C
____GG________TT______CC__GG
10._GU_221_/C
____GG________TT______CC__GG
11._GU_221_/C
____GG________TT______CC__GG
12._GU_221_/C
____GG________TT______CC__GG
13._GU_221_/C
____GG________TT______CC__GG
14._GU_221_/C
____GG________TT______CC__GG
15._GU_221_/C
____GG________TT______CC__GG
16._GC-01-075-4-11
____GG________TT______CC__GG
17._GC-01-075-4-11
____GG________TT______CC__GG
18._GC-01-075-4-11
____GG________TT______CC__GG
19._GC-01-075-4-11
____GG________TT______CC__GG
20._GC-01-075-4-11
____GG________TT______CC__GG
21._GC-01-075-4-11
____GG________TT______CC__GG
22._GC-01-075-4-11
____GG________TT______CC__GG
23._GC-01-075-4-11
____GG________TT______CC__GG
24._GC-01-075-4-11
____GG________TT______CC__GG
25._GC-01-075-4-11
____GG________TT______CC__GG
26._GC-01-075-4-11
____GG________TT______CC__GG
27._GC-01-075-4-11
____GG________TT______CC__GG
28._GC-01-075-4-11
____CC________TT______CC__GG
29._GC-01-075-4-11
____CC________TT______CC__GG
30._GU_221_/C
____CC________TT______CC__GG
31._GU_221_/C
____CC________TT______CC__GG
32._GC-01-75-4-11
____CC________AA__________GG
33._RUQ_200
____CC________AA__________GG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CTAACCCCAACCGGGGCCAAAATTTTAA
1._RUQ_200
CTAACCCCAACCGGGGCCAAAATTTTAA
2._RUQ_200
______CCAA____GG____AA____AA
3._RUQ_200
________AA____GG____________
4._GU_221_/C
________AA____GG____________
5._GU_221_/C
________AA____GG____________
6._GU_221_/C
________AA____GG____________
7._GU_221_/C
________AA____GG____________
8._GU_221_/C
________AA____GG____________
9._GU_221_/C
________AA____GG____________
10._GU_221_/C
________AA____GG____________
11._GU_221_/C
________AA____GG____________
12._GU_221_/C
________AA____GG____________
13._GU_221_/C
________AA____GG____________
14._GU_221_/C
________AA____GG____________
15._GU_221_/C
________AA____GG____________
16._GC-01-075-4-11
______CCAA__GGGGGG__AA____AA
17._GC-01-075-4-11
______CCAA__GGGGGG__AA____AA
18._GC-01-075-4-11
______CCAA__GGGGGG__AA____AA
19._GC-01-075-4-11
______CCAA__GGGGGG__AA____AA
20._GC-01-075-4-11
______CCAA__GGGGGG__AA____AA
21._GC-01-075-4-11
______CCAA__GGGGGG__AA____AA
22._GC-01-075-4-11
______CCAA__GGGGGG__AA____AA
23._GC-01-075-4-11
______CCAA__GGGGGG__AA____AA
24._GC-01-075-4-11
______CCAA__GGGGGG__AA____AA
25._GC-01-075-4-11
______CCAA__GGGGGG__AA____AA
26._GC-01-075-4-11
______CCAA__GGGGGG__AA____AA
27._GC-01-075-4-11
______CCAA__GGGGGG__AA______
28._GC-01-075-4-11
______CCGG__GGGGGG__AA____AA
29._GC-01-075-4-11
______CCGG__GGGGGG__AA____AA
30._GU_221_/C
________GG____GG____________
31._GU_221_/C
________GG____GG____________
32._GC-01-75-4-11
________AA__GGCCCC__AA____AA
33._RUQ_200
________AA__GGCCCC__AA____AA
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGCCAACCAGCTCCACATCCAGAACTAC
1._RUQ_200
GGCCAACCAGCTCCACATCCAGAACTAC
2._RUQ_200
GGCC________CCAC__CC__AA____
3._RUQ_200
GG__AA________AC__CC__AA____
4._GU_221_/C
GG__AG________AC__CC__AA____
5._GU_221_/C
GG__AG________AC__CC__AA____
6._GU_221_/C
GG__AG________AC__CC__AA____
7._GU_221_/C
GG__AG________AC__CC__AA____
8._GU_221_/C
GG__AG________AC__CC__AA____
9._GU_221_/C
GG__AG________AC__CC__AA____
10._GU_221_/C
GG__AG________AC__CC__AA____
11._GU_221_/C
GG__AG________AC__CC__AA____
12._GU_221_/C
GG__AG________AC__CC__AA____
13._GU_221_/C
GG__AG________AC__CC__AA____
14._GU_221_/C
GG__AG________AC__CC__AA____
15._GU_221_/C
GG__AG________AC__CC__AA____
16._GC-01-075-4-11
GGCTAG______CCAC__CC__AA____
17._GC-01-075-4-11
GGCTAG______CCAC__CC__AA____
18._GC-01-075-4-11
GGCTAG______CCAC__CC__AA____
19._GC-01-075-4-11
GGCTAG______CCAC__CC__AA____
20._GC-01-075-4-11
GGCTAG______CCAC__CC__AA____
21._GC-01-075-4-11
GGCTAG______CCAC__CC__AA____
22._GC-01-075-4-11
GGCTAG______CCAC__CC__AA____
23._GC-01-075-4-11
GGCTAG______CCAC__CC__AA____
24._GC-01-075-4-11
GGCTAG______CCAC__CC__AA____
25._GC-01-075-4-11
GGCTAG______CCAC__CC__AA____
26._GC-01-075-4-11
GGCTAG______CCAC__CC__AA____
27._GC-01-075-4-11
GGCTAG______CCAC__CC__AA____
28._GC-01-075-4-11
GGCCAA______CCCC__CC__AA____
29._GC-01-075-4-11
GGCCAA______CCCC__CC__AA____
30._GU_221_/C
GG__AA________CC__CC__AA____
31._GU_221_/C
GG__AA________CC__CC__AA____
32._GC-01-75-4-11
CC__________GGAC__CC__AA____
33._RUQ_200
CC__________GGAC__CC__AA____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CTAAGGAACCGGGGGGCCAAAATTGGCC
1._RUQ_200
CTAAGGAACCGGGGGGCCAAAATTGGCC
2._RUQ_200
____GG____GG______AA________
3._RUQ_200
__________GG______AA________
4._GU_221_/C
__________GG______AA________
5._GU_221_/C
__________GG______AA________
6._GU_221_/C
__________GG______AA________
7._GU_221_/C
__________GG______AA________
8._GU_221_/C
__________GG______AA________
9._GU_221_/C
__________GG______AA________
10._GU_221_/C
__________GG______AA________
11._GU_221_/C
__________GG______AA________
12._GU_221_/C
__________GG______AA________
13._GU_221_/C
__________GG______AA________
14._GU_221_/C
__________GG______AA________
15._GU_221_/C
__________GG______AA________
16._GC-01-075-4-11
____GG____GG______AA________
17._GC-01-075-4-11
____GG____GG______AA________
18._GC-01-075-4-11
____GG____GG______AA________
19._GC-01-075-4-11
____GG____GG______AA________
20._GC-01-075-4-11
____GG____GG______AA________
21._GC-01-075-4-11
____GG____GG______AA________
22._GC-01-075-4-11
____GG____GG______AA________
23._GC-01-075-4-11
____GG____GG______AA________
24._GC-01-075-4-11
____GG____GG______AA________
25._GC-01-075-4-11
____GG____GG______AA________
26._GC-01-075-4-11
____GG____GG______AA________
27._GC-01-075-4-11
____GG____GG______AA________
28._GC-01-075-4-11
____GG____GG______AA________
29._GC-01-075-4-11
____GG____GG______AA________
30._GU_221_/C
__________GG______AA________
31._GU_221_/C
__________GG______AA________
32._GC-01-75-4-11
____GG____GG______AA________
33._RUQ_200
____GG____GG______AA________
 57 58 59            
_Input profile
TTACTTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._RUQ_200
TTACTTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._RUQ_200
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._RUQ_200
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._GU_221_/C
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._GU_221_/C
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._GU_221_/C
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._GU_221_/C
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._GU_221_/C
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._GU_221_/C
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._GU_221_/C
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._GU_221_/C
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._GU_221_/C
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._GU_221_/C
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._GU_221_/C
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._GU_221_/C
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._GC-01-075-4-11
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._GC-01-075-4-11
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._GC-01-075-4-11
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._GC-01-075-4-11
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._GC-01-075-4-11
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._GC-01-075-4-11
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._GC-01-075-4-11
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._GC-01-075-4-11
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._GC-01-075-4-11
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._GC-01-075-4-11
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
26._GC-01-075-4-11
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
27._GC-01-075-4-11
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
28._GC-01-075-4-11
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
29._GC-01-075-4-11
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
30._GU_221_/C
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
31._GU_221_/C
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
32._GC-01-75-4-11
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
33._RUQ_200
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: GU_221_/C RUQ_200B

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

1._GU_221_/C RUQ_200

identical
58 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

2._GU_221_/C RUQ_200

identical
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._GU_221_/C RUQ_200

identical
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

4._GU_221_/C

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 2
 Dapeng Zhang, 2016

5._GU_221_/C

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 6
 Dapeng Zhang, 2016

6._GU_221_/C

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 8
 Dapeng Zhang, 2016

7._GU_221_/C

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 9
 Dapeng Zhang, 2016

8._GU_221_/C

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 10
 Dapeng Zhang, 2016

9._GU_221_/C

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 12
 Dapeng Zhang, 2016

10._GU_221_/C

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 14
 Dapeng Zhang, 2016

11._GU_221_/C

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 16
 Dapeng Zhang, 2016

12._GU_221_/C

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 13 > F
 Dapeng Zhang, 2016

13._GU_221_/C

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 15 > F
 Dapeng Zhang, 2016

14._GU_221_/C

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 15 > F
 Dapeng Zhang, 2016

15._GU_221_/C

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 4 > FP
 Dapeng Zhang, 2016

16._GU_221_/C GC-01-075-4-11

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

17._GU_221_/C GC-01-075-4-11

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

18._GU_221_/C GC-01-075-4-11

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

19._GU_221_/C GC-01-075-4-11

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

20._GU_221_/C GC-01-075-4-11

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

21._GU_221_/C GC-01-075-4-11

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

22._GU_221_/C GC-01-075-4-11

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

23._GU_221_/C GC-01-075-4-11

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

24._GU_221_/C GC-01-075-4-11

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

25._GU_221_/C GC-01-075-4-11

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

26._GU_221_/C GC-01-075-4-11

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

27._GU_221_/C GC-01-075-4-11

90 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

28._GU_221_/C GC-01-075-4-11

83.3 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

29._GU_221_/C GC-01-075-4-11

83.3 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

30._GU_221_/C

80.8 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 11
 Dapeng Zhang, 2016

31._GU_221_/C

80.8 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 1 > FP
 Dapeng Zhang, 2016

32._GU_221_/C GC-01-75-4-11

70.6 %
17 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 11, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

33._GU_221_/C RUQ_200

70.6 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1527 2TcSNP1524 3TcSNP1458 4TcSNP1404 5TcSNP1401
6TcSNP1293 7TcSNP1275 8TcSNP1253 9TcSNP1237 10TcSNP1230
11TcSNP1205 12TcSNP1144 13TcSNP1112 14TcSNP1062 15TcSNP1053
16TcSNP1019 17TcSNP1010 18TcSNP999 19TcSNP998 20TcSNP945
21TcSNP899 22TcSNP872 23TcSNP836 24TcSNP835 25TcSNP823
26TcSNP800 27TcSNP739 28TcSNP731 29TcSNP723 30TcSNP702
31TcSNP645 32TcSNP644 33TcSNP642 34TcSNP640 35TcSNP602
36TcSNP591 37TcSNP589 38TcSNP577 39TcSNP546 40TcSNP529
41TcSNP522 42TcSNP519 43TcSNP421 44TcSNP363 45TcSNP329
46TcSNP305 47TcSNP290 48TcSNP230 49TcSNP194 50TcSNP189
51TcSNP176 52TcSNP144 53TcSNP143 54TcSNP131 55TcSNP52
56TcSNP49 57TcSNP33 58TcSNP19 59TcSNP13