SNP Profiles of GU 296 /H View Data

Show/Hide Profiles

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AA	TT	CG	GG	AA	TT	GG	TT	TT	AA	TT	CC	TT	GG
1._GC-01-076-4-12	__	__	CG	__	__	__	__	TT	__	__	__	CC	__	GG
2._GC-01-076-4-12	__	__	CG	__	__	__	__	TT	__	__	__	CC	__	GG
3._GC-01-076-4-12	__	__	CG	__	__	__	__	TT	__	__	__	CC	__	GG
4._GC-01-076-4-12	__	__	CG	__	__	__	__	TT	__	__	__	CC	__	GG
5._GC-01-076-4-12	__	__	CG	__	__	__	__	TT	__	__	__	CC	__	GG
6._GC-01-076-4-12	__	__	CG	__	__	__	__	TT	__	__	__	CC	__	GG
7._GC-01-076-4-12	__	__	CG	__	__	__	__	TT	__	__	__	CC	__	GG
8._GC-01-076-4-12	__	__	CG	__	__	__	__	TT	__	__	__	CC	__	GG
9._GC-01-076-4-12	__	__	CG	__	__	__	__	TT	__	__	__	CC	__	GG
10._GC-01-076-4-12	__	__	CG	__	__	__	__	TT	__	__	__	CC	__	GG
11._GC-01-076-4-12	__	__	CG	__	__	__	__	TT	__	__	__	CC	__	GG
12._GC-01-076-4-12	__	__	CG	__	__	__	__	TT	__	__	__	CC	__	GG
13._GC-01-076-4-12	__	__	CG	__	__	__	__	TT	__	__	__	CC	__	GG
14._GC-01-076-4-12	__	__	CG	__	__	__	__	TT	__	__	__	CC	__	GG
15._GC-01-076-4-12	__	__	CG	__	__	__	__	TT	__	__	__	CC	__	GG
16._GC-01-076-4-12	__	__	CG	__	__	__	__	TT	__	__	__	CC	__	GG
17._GC-01-76-4-12	__	__	CG	__	__	__	__	AA	__	__	__	__	__	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CC	AA	CT	CC	GG	CC	GG	GG	CC	AA	AA	TT	CT	AA
1._GC-01-076-4-12	__	__	__	CC	GG	__	GG	GG	__	__	AA	__	__	AA
2._GC-01-076-4-12	__	__	__	CC	GG	__	GG	GG	GG	__	AA	__	__	AA
3._GC-01-076-4-12	__	__	__	CC	GG	__	GG	GG	GG	__	AA	__	__	AA
4._GC-01-076-4-12	__	__	__	CC	GG	__	GG	GG	GG	__	AA	__	__	AA
5._GC-01-076-4-12	__	__	__	CC	GG	__	GG	GG	GG	__	AA	__	__	AA
6._GC-01-076-4-12	__	__	__	CC	GG	__	GG	GG	GG	__	AA	__	__	AA
7._GC-01-076-4-12	__	__	__	CC	GG	__	GG	GG	GG	__	AA	__	__	AA
8._GC-01-076-4-12	__	__	__	CC	GG	__	GG	GG	GG	__	AA	__	__	AA
9._GC-01-076-4-12	__	__	__	CC	GG	__	GG	GG	GG	__	AA	__	__	AA
10._GC-01-076-4-12	__	__	__	CC	GG	__	GG	GG	GG	__	AA	__	__	AA
11._GC-01-076-4-12	__	__	__	CC	GG	__	GG	GG	GG	__	AA	__	__	AA
12._GC-01-076-4-12	__	__	__	CC	GG	__	GG	GG	GG	__	AA	__	__	AA
13._GC-01-076-4-12	__	__	__	CC	GG	__	GG	GG	GG	__	AA	__	__	AA
14._GC-01-076-4-12	__	__	__	CC	GG	__	GG	GG	GG	__	AA	__	__	AA
15._GC-01-076-4-12	__	__	__	CC	GG	__	GG	GG	GG	__	AA	__	__	AA
16._GC-01-076-4-12	__	__	__	CC	GG	__	GG	GG	GG	__	AA	__	__	AA
17._GC-01-76-4-12	__	__	__	__	GG	__	GG	CC	CC	__	AA	__	__	AA

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	GG	CC	CC	AA	CC	GG	CT	CC	AC	AT	CC	AA	AA	CT
1._GC-01-076-4-12	GG	CT	__	GG	__	__	__	CC	AC	__	CC	__	AA	__
2._GC-01-076-4-12	GG	CT	__	GG	__	__	__	CC	AC	__	CC	__	AA	__
3._GC-01-076-4-12	GG	CT	__	GG	__	__	__	CC	AC	__	CC	__	AA	__
4._GC-01-076-4-12	GG	CT	__	GG	__	__	__	CC	AC	__	CC	__	AA	__
5._GC-01-076-4-12	GG	CT	__	GG	__	__	__	CC	AC	__	CC	__	AA	__
6._GC-01-076-4-12	GG	CT	__	GG	__	__	__	CC	AC	__	CC	__	AA	__
7._GC-01-076-4-12	GG	CT	__	GG	__	__	__	CC	AC	__	CC	__	AA	__
8._GC-01-076-4-12	GG	CT	__	GG	__	__	__	CC	AC	__	CC	__	AA	__
9._GC-01-076-4-12	GG	CT	__	GG	__	__	__	CC	AC	__	CC	__	AA	__
10._GC-01-076-4-12	GG	CT	__	GG	__	__	__	CC	AC	__	CC	__	AA	__
11._GC-01-076-4-12	GG	CT	__	GG	__	__	__	CC	AC	__	CC	__	AA	__
12._GC-01-076-4-12	GG	CT	__	GG	__	__	__	CC	AC	__	CC	__	AA	__
13._GC-01-076-4-12	GG	CT	__	GG	__	__	__	CC	AC	__	CC	__	AA	__
14._GC-01-076-4-12	GG	CT	__	GG	__	__	__	CC	AC	__	CC	__	AA	__
15._GC-01-076-4-12	GG	CT	__	GG	__	__	__	CC	AC	__	CC	__	AA	__
16._GC-01-076-4-12	GG	CT	__	GG	__	__	__	CC	AC	__	CC	__	AA	__
17._GC-01-76-4-12	CC	__	__	__	__	__	__	GG	AC	__	CC	__	AA	__

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	AC	CT	AA	GG	AA	CC	GG	GG	GG	CC	AA	AA	TT	GG
1._GC-01-076-4-12	__	__	__	GG	__	__	GG	__	__	__	AA	__	__	__
2._GC-01-076-4-12	__	__	__	GG	__	__	GG	__	__	__	AA	__	__	__
3._GC-01-076-4-12	__	__	__	GG	__	__	GG	__	__	__	AA	__	__	__
4._GC-01-076-4-12	__	__	__	GG	__	__	GG	__	__	__	AA	__	__	__
5._GC-01-076-4-12	__	__	__	GG	__	__	GG	__	__	__	AA	__	__	__
6._GC-01-076-4-12	__	__	__	GG	__	__	GG	__	__	__	AA	__	__	__
7._GC-01-076-4-12	__	__	__	GG	__	__	GG	__	__	__	AA	__	__	__
8._GC-01-076-4-12	__	__	__	GG	__	__	GG	__	__	__	AA	__	__	__
9._GC-01-076-4-12	__	__	__	GG	__	__	GG	__	__	__	AA	__	__	__
10._GC-01-076-4-12	__	__	__	GG	__	__	GG	__	__	__	AA	__	__	__
11._GC-01-076-4-12	__	__	__	GG	__	__	GG	__	__	__	AA	__	__	__
12._GC-01-076-4-12	__	__	__	GG	__	__	GG	__	__	__	AA	__	__	__
13._GC-01-076-4-12	__	__	__	GG	__	__	GG	__	__	__	AA	__	__	__
14._GC-01-076-4-12	__	__	__	GG	__	__	GG	__	__	__	AA	__	__	__
15._GC-01-076-4-12	__	__	__	GG	__	__	GG	__	__	__	AA	__	__	__
16._GC-01-076-4-12	__	__	__	GG	__	__	GG	__	__	__	AA	__	__	__
17._GC-01-76-4-12	__	__	__	GG	__	__	GG	__	__	__	AA	__	__	__

	57	58	59	60
_Input profile	CC	TT	AC	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._GC-01-076-4-12	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._GC-01-076-4-12	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._GC-01-076-4-12	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._GC-01-076-4-12	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._GC-01-076-4-12	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._GC-01-076-4-12	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._GC-01-076-4-12	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._GC-01-076-4-12	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._GC-01-076-4-12	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._GC-01-076-4-12	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._GC-01-076-4-12	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._GC-01-076-4-12	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._GC-01-076-4-12	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._GC-01-076-4-12	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._GC-01-076-4-12	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
16._GC-01-076-4-12	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
17._GC-01-76-4-12	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: GU_296_/H RUQ_230

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

View Data

GU
0.993

1._GU_296_/H GC-01-076-4-12

92.5 %
20 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12 > FP2

Mars, 2018

2._GU_296_/H GC-01-076-4-12

88.1 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

Mars, 2018

3._GU_296_/H GC-01-076-4-12

88.1 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 16

Notes: 16

Mars, 2018

4._GU_296_/H GC-01-076-4-12

88.1 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 15

Notes: 15

Mars, 2018

5._GU_296_/H GC-01-076-4-12

88.1 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14

Mars, 2018

6._GU_296_/H GC-01-076-4-12

88.1 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13

Mars, 2018

7._GU_296_/H GC-01-076-4-12

88.1 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11

Mars, 2018

8._GU_296_/H GC-01-076-4-12

88.1 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

Mars, 2018

9._GU_296_/H GC-01-076-4-12

88.1 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

Mars, 2018

10._GU_296_/H GC-01-076-4-12

88.1 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

Mars, 2018

11._GU_296_/H GC-01-076-4-12

88.1 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

Mars, 2018

12._GU_296_/H GC-01-076-4-12

88.1 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

Mars, 2018

13._GU_296_/H GC-01-076-4-12

88.1 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

Mars, 2018

14._GU_296_/H GC-01-076-4-12

88.1 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

Mars, 2018

15._GU_296_/H GC-01-076-4-12

88.1 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

Mars, 2018

16._GU_296_/H GC-01-076-4-12

88.1 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

Mars, 2018

17._GU_296_/H GC-01-76-4-12

76.5 %
17 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 4, Rep: 12, Tree: 2

Notes: MCCS_Structure_refs_above_0.9membership

Mars, 2018

Key to SNP Markers

1	TcSNP1527	2	TcSNP1524	3	TcSNP1458	4	TcSNP1404	5	TcSNP1401
6	TcSNP1293	7	TcSNP1275	8	TcSNP1253	9	TcSNP1237	10	TcSNP1230
11	TcSNP1205	12	TcSNP1144	13	TcSNP1112	14	TcSNP1062	15	TcSNP1053
16	TcSNP1019	17	TcSNP1010	18	TcSNP999	19	TcSNP998	20	TcSNP945
21	TcSNP899	22	TcSNP872	23	TcSNP836	24	TcSNP835	25	TcSNP823
26	TcSNP800	27	TcSNP739	28	TcSNP731	29	TcSNP723	30	TcSNP702
31	TcSNP660	32	TcSNP645	33	TcSNP644	34	TcSNP642	35	TcSNP640
36	TcSNP602	37	TcSNP591	38	TcSNP589	39	TcSNP577	40	TcSNP546
41	TcSNP529	42	TcSNP522	43	TcSNP519	44	TcSNP421	45	TcSNP363
46	TcSNP329	47	TcSNP305	48	TcSNP290	49	TcSNP230	50	TcSNP194
51	TcSNP189	52	TcSNP176	53	TcSNP144	54	TcSNP143	55	TcSNP131
56	TcSNP52	57	TcSNP49	58	TcSNP33	59	TcSNP19	60	TcSNP13

SNP Profiles of GU 296 /H View Data

Show/Hide Profiles

Input profile: GU_296_/H RUQ_230

1._GU_296_/H GC-01-076-4-12

92.5 % 20 shared markers

2._GU_296_/H GC-01-076-4-12

88.1 % 21 shared markers

3._GU_296_/H GC-01-076-4-12

88.1 % 21 shared markers

4._GU_296_/H GC-01-076-4-12

88.1 % 21 shared markers

5._GU_296_/H GC-01-076-4-12

88.1 % 21 shared markers

6._GU_296_/H GC-01-076-4-12

88.1 % 21 shared markers

7._GU_296_/H GC-01-076-4-12

88.1 % 21 shared markers

8._GU_296_/H GC-01-076-4-12

88.1 % 21 shared markers

9._GU_296_/H GC-01-076-4-12

88.1 % 21 shared markers

10._GU_296_/H GC-01-076-4-12

88.1 % 21 shared markers

11._GU_296_/H GC-01-076-4-12

88.1 % 21 shared markers

12._GU_296_/H GC-01-076-4-12

88.1 % 21 shared markers

13._GU_296_/H GC-01-076-4-12

88.1 % 21 shared markers

14._GU_296_/H GC-01-076-4-12

88.1 % 21 shared markers

15._GU_296_/H GC-01-076-4-12

88.1 % 21 shared markers

16._GU_296_/H GC-01-076-4-12

88.1 % 21 shared markers

17._GU_296_/H GC-01-76-4-12

76.5 % 17 shared markers

92.5 %
20 shared markers

88.1 %
21 shared markers

88.1 %
21 shared markers

88.1 %
21 shared markers

88.1 %
21 shared markers

88.1 %
21 shared markers

88.1 %
21 shared markers

88.1 %
21 shared markers

88.1 %
21 shared markers

88.1 %
21 shared markers

88.1 %
21 shared markers

88.1 %
21 shared markers

88.1 %
21 shared markers

88.1 %
21 shared markers

88.1 %
21 shared markers

88.1 %
21 shared markers

76.5 %
17 shared markers