SNP Profiles of NACIONAL View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AA	TT	GG	GG	GG	TT	GG	TT	CC	AA	TT	CC	TT	AA
1._APA_4___	__	__	GG	__	__	__	__	TT	__	__	__	__	__	__
2._APA_4___	__	__	CC	__	__	__	__	__	__	__	__	__	__	__
3._APA_4___	__	__	CC	__	__	__	__	AA	__	__	__	__	__	AA
4._APA_4___	__	__	CC	__	__	__	__	AA	__	__	__	__	__	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CC	AA	CC	TT	GG	CC	AA	GG	TT	TT	AA	TT	TT	GG
1._APA_4___	__	__	__	TT	GG	__	__	GG	__	__	AA	__	__	GG
2._APA_4___	__	__	__	__	__	__	__	CC	__	__	__	__	__	__
3._APA_4___	__	__	__	__	GG	__	AA	CC	CC	__	AA	__	__	GG
4._APA_4___	__	__	__	__	GG	__	AA	CC	CC	__	AA	__	__	GG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	GG	TT	GG	AA	CC	AA	TT	CC	AA	TT	CC	GG	AC	TT
1._APA_4___	GG	TT	__	__	__	__	__	CC	AA	__	CC	__	CC	__
2._APA_4___	__	__	__	__	__	__	__	CC	AA	__	CC	__	__	__
3._APA_4___	CC	__	__	__	__	__	__	GG	AA	__	CC	__	CC	__
4._APA_4___	CC	__	__	__	__	__	__	GG	AA	__	CC	__	CC	__

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	CC	CC	AA	GG	AA	TT	AA	TT	GG	CC	CC	TT	TT	GG
1._APA_4___	__	__	__	GG	__	__	AA	__	__	__	CC	__	__	__
2._APA_4___	__	__	__	__	__	__	AA	__	__	__	CC	__	__	__
3._APA_4___	__	__	__	GG	__	__	AA	__	__	__	CC	__	__	__
4._APA_4___	__	__	__	GG	__	__	AA	__	__	__	CC	__	__	__

	57	58	59	60
_Input profile	CC	CC	CC	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._APA_4___	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._APA_4___	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._APA_4___	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._APA_4___	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: APA_4 RUQ_843

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

View Data

Ame
0.631 Nan
0.142 Par
0.196

1._APA_4 RUQ_843

96.9 %
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

2._APA_4 APA4

71.4 %
7 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam

Location: CEFORTT

Jocelyn De Wever et al., 2019

3._APA_4 RUQ_843

61.8 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Mars, 2018

4._APA_4 APA_4_Fld#_26_Plt#_1

61.8 %
17 shared markers

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USDA-TARS, United States of America

Location: Field: 26, Tree: 1

Mars, 2018

Key to SNP Markers

1	TcSNP1527	2	TcSNP1524	3	TcSNP1458	4	TcSNP1404	5	TcSNP1401
6	TcSNP1293	7	TcSNP1275	8	TcSNP1253	9	TcSNP1237	10	TcSNP1230
11	TcSNP1205	12	TcSNP1144	13	TcSNP1112	14	TcSNP1062	15	TcSNP1053
16	TcSNP1019	17	TcSNP1010	18	TcSNP999	19	TcSNP998	20	TcSNP945
21	TcSNP899	22	TcSNP872	23	TcSNP836	24	TcSNP835	25	TcSNP823
26	TcSNP800	27	TcSNP739	28	TcSNP731	29	TcSNP723	30	TcSNP702
31	TcSNP660	32	TcSNP645	33	TcSNP644	34	TcSNP642	35	TcSNP640
36	TcSNP602	37	TcSNP591	38	TcSNP589	39	TcSNP577	40	TcSNP546
41	TcSNP529	42	TcSNP522	43	TcSNP519	44	TcSNP421	45	TcSNP363
46	TcSNP329	47	TcSNP305	48	TcSNP290	49	TcSNP230	50	TcSNP194
51	TcSNP189	52	TcSNP176	53	TcSNP144	54	TcSNP143	55	TcSNP131
56	TcSNP52	57	TcSNP49	58	TcSNP33	59	TcSNP19	60	TcSNP13

SNP Profiles of NACIONAL View Data

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Input profile: APA_4 RUQ_843

1._APA_4 RUQ_843

96.9 % 16 shared markers

2._APA_4 APA4

71.4 % 7 shared markers

3._APA_4 RUQ_843

61.8 % 17 shared markers

4._APA_4 APA_4_Fld#_26_Plt#_1

61.8 % 17 shared markers

96.9 %
16 shared markers

71.4 %
7 shared markers

61.8 %
17 shared markers

61.8 %
17 shared markers