SNP Profiles of CATIE 1000 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AT	TT	GG	AG	AG	TT	GG	GT	CT	AA	TT	CC	CT	AG
1._RUQ_844	__	__	GG	__	__	__	__	GT	__	__	__	__	__	__
2._RUQ_844	__	__	CC	__	__	__	__	AC	__	__	__	__	__	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CC	AA	CC	CT	AG	CC	AA	CG	CT	AT	AA	TT	CT	AG
1._RUQ_844	__	__	__	__	AG	__	__	CG	__	__	AA	__	__	AG
2._RUQ_844	__	__	__	__	AG	__	AA	CG	CC	__	AA	__	__	AG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	GT	TT	GG	AA	CC	AA	TT	CC	AA	AT	CC	AG	AC	CT
1._RUQ_844	GT	TT	__	__	__	__	__	CC	AA	__	CC	__	CC	__
2._RUQ_844	AC	__	__	__	__	__	__	GG	AA	__	CC	__	CC	__

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	AC	CC	AC	GG	AC	CT	AG	TT	AG	CT	CC	AT	TT	CC
1._RUQ_844	__	__	__	GG	__	__	AG	__	__	__	CC	__	__	__
2._RUQ_844	__	__	__	GG	__	__	AG	__	__	__	CC	__	__	__

	57	58	59
_Input profile	CT	AC	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._RUQ_844	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._RUQ_844	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: CATIE_1000 RUQ_844

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Ame
0.509 GU
0.067 IMC
0.064 LCT
0.172 Nan
0.067 Sca
0.058

1._CATIE_1000 RUQ_844

96.7 %
15 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

2._CATIE_1000 RUQ_844

70.6 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1527	2	TcSNP1524	3	TcSNP1458	4	TcSNP1404	5	TcSNP1401
6	TcSNP1293	7	TcSNP1275	8	TcSNP1253	9	TcSNP1237	10	TcSNP1230
11	TcSNP1205	12	TcSNP1144	13	TcSNP1112	14	TcSNP1062	15	TcSNP1053
16	TcSNP1019	17	TcSNP1010	18	TcSNP999	19	TcSNP998	20	TcSNP945
21	TcSNP899	22	TcSNP872	23	TcSNP836	24	TcSNP835	25	TcSNP823
26	TcSNP800	27	TcSNP739	28	TcSNP731	29	TcSNP723	30	TcSNP702
31	TcSNP660	32	TcSNP645	33	TcSNP644	34	TcSNP642	35	TcSNP640
36	TcSNP602	37	TcSNP591	38	TcSNP589	39	TcSNP577	40	TcSNP546
41	TcSNP529	42	TcSNP522	43	TcSNP519	44	TcSNP421	45	TcSNP363
46	TcSNP329	47	TcSNP305	48	TcSNP290	49	TcSNP230	50	TcSNP194
51	TcSNP189	52	TcSNP176	53	TcSNP144	54	TcSNP143	55	TcSNP131
56	TcSNP49	57	TcSNP33	58	TcSNP19	59	TcSNP13