SNP Profiles of ICS 1 View Data

Show/Hide Profiles

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AT	TT	GG	GG	GG	TT	TT	TT	CT	AC	GT	TT	TT	AA
1._RUQ_847	AT	TT	GG	GG	GG	TT	TT	TT	CT	AC	GT	TT	TT	AA
2._ICS_1	__	__	GG	__	__	__	__	TT	__	__	__	TT	__	AA
3._ICS_1	__	__	GG	__	__	__	__	TT	__	__	__	TT	__	AA
4._ICS_1	__	__	GG	__	__	__	__	TT	__	__	__	TT	__	AA
5._ICS_1	__	__	GG	__	__	__	__	TT	__	__	__	TT	__	AA
6._ICS_1	__	__	GG	__	__	__	__	TT	__	__	__	TT	__	AA
7._RUQ_847	__	__	GG	__	__	__	__	TT	__	__	__	TT	__	AA
8._ICS_1	__	__	GG	__	__	__	__	TT	__	__	__	TT	__	AA
9._ICS_1	__	__	GG	__	__	__	__	TT	__	__	__	TT	__	AA
10._RUQ_847	__	__	GG	__	__	__	__	TT	__	__	__	__	__	__
11._RUQ_847	__	__	GG	__	__	__	__	TT	__	__	__	CT	__	AA
12._NA	__	__	GG	__	__	__	__	TT	__	__	__	TT	__	AA
13._NA	__	__	GG	__	__	__	__	TT	__	__	__	TT	__	AA
14._NA	__	__	GG	__	__	__	__	TT	__	__	__	TT	__	AA
15._NA	__	__	GG	__	__	__	__	TT	__	__	__	TT	__	AA
16._NA	__	__	GG	__	__	__	__	TT	__	__	__	TT	__	AA
17._NA	__	__	GG	__	__	__	__	TT	__	__	__	TT	__	AA
18._RUQ_847	__	__	CC	__	__	__	__	__	__	__	__	__	__	__
19._RUQ_847	__	__	CC	__	__	__	__	AA	__	__	__	__	__	AA
20._MITC-000297	__	__	CC	__	__	__	__	AA	__	__	__	__	__	AA
21._ICS_1_Fld#_73_Plt#_2	__	__	CC	__	__	__	__	AA	__	__	__	__	__	AA
22._ICS1	__	__	CG	__	__	__	__	__	__	__	__	__	__	__
23._ICS_1	__	__	GG	__	__	__	__	TT	__	__	__	CC	__	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AT	CT	CT	AG	CG	AA	CG	TT	AA	AC	CT	CT	GG
1._RUQ_847	CT	AT	CT	CT	AG	CG	AA	CG	TT	AA	AC	CT	CT	GG
2._ICS_1	__	__	__	__	AG	__	__	CG	__	__	__	__	__	__
3._ICS_1	__	__	__	__	AG	__	__	CG	__	__	__	__	__	__
4._ICS_1	__	__	__	__	AG	__	__	CG	__	__	__	__	__	__
5._ICS_1	__	__	__	__	AG	__	__	CG	__	__	__	__	__	__
6._ICS_1	__	__	__	__	AG	__	__	CG	__	__	__	__	__	__
7._RUQ_847	__	__	__	__	AG	__	__	CG	__	__	__	__	__	__
8._ICS_1	__	__	__	__	AG	__	__	CG	__	__	__	__	__	__
9._ICS_1	__	__	__	__	AG	__	__	__	__	__	__	__	__	__
10._RUQ_847	__	__	__	__	AG	__	__	CG	__	__	AC	__	__	GG
11._RUQ_847	__	__	__	__	AG	__	__	CG	__	__	__	__	__	__
12._NA	__	__	__	CT	AG	__	AA	CG	GG	__	AC	__	__	GG
13._NA	__	__	__	CT	AG	__	AA	CG	GG	__	AC	__	__	GG
14._NA	__	__	__	CT	AG	__	AA	CG	GG	__	AC	__	__	GG
15._NA	__	__	__	CT	AG	__	AA	CG	GG	__	AC	__	__	GG
16._NA	__	__	__	CT	AG	__	AA	CG	GG	__	AC	__	__	GG
17._NA	__	__	__	CT	AG	__	AA	CG	GG	__	AC	__	__	GG
18._RUQ_847	__	__	__	__	__	__	__	CG	__	__	__	__	__	__
19._RUQ_847	__	__	__	__	AG	__	AA	CG	CC	__	AC	__	__	GG
20._MITC-000297	__	__	__	__	AG	__	AA	CG	CC	__	AC	__	__	GG
21._ICS_1_Fld#_73_Plt#_2	__	__	__	__	AG	__	AA	CG	CC	__	AC	__	__	GG
22._ICS1	__	__	__	__	__	__	__	CG	__	__	__	__	__	__
23._ICS_1	__	__	__	__	AG	__	__	GG	__	__	__	__	__	__

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	GT	CT	CG	GG	GG	AA	CT	CT	AC	AA	CC	AA	AC	CT
1._RUQ_847	GT	CT	CG	GG	GG	AA	CT	CT	AC	AA	CC	AA	AC	CT
2._ICS_1	GT	__	__	GG	__	__	__	__	AC	__	CC	__	CC	__
3._ICS_1	GT	__	__	GG	__	__	__	__	AC	__	CC	__	CC	__
4._ICS_1	GT	__	__	GG	__	__	__	__	AC	__	CC	__	CC	__
5._ICS_1	GT	__	__	GG	__	__	__	__	AC	__	CC	__	CC	__
6._ICS_1	GT	__	__	GG	__	__	__	__	AC	__	CC	__	CC	__
7._RUQ_847	GT	__	__	GG	__	__	__	__	AC	__	CC	__	CC	__
8._ICS_1	GT	__	__	GG	__	__	__	__	AC	__	__	__	CC	__
9._ICS_1	GT	__	__	GG	__	__	__	__	AC	__	CC	__	CC	__
10._RUQ_847	GT	CT	__	__	__	__	__	CT	AA	__	CC	__	CC	__
11._RUQ_847	GT	__	__	GG	__	__	__	__	AC	__	CC	__	CC	__
12._NA	GT	CC	__	GG	__	__	__	CT	AC	__	CC	__	CC	__
13._NA	GT	CC	__	GG	__	__	__	CT	AC	__	CC	__	CC	__
14._NA	GT	CC	__	GG	__	__	__	CT	AC	__	CC	__	CC	__
15._NA	GT	CC	__	GG	__	__	__	CT	AC	__	CC	__	CC	__
16._NA	GT	CC	__	GG	__	__	__	CT	AC	__	CC	__	CC	__
17._NA	GT	CC	__	GG	__	__	__	CT	AC	__	__	__	CC	__
18._RUQ_847	__	__	__	__	__	__	__	CT	AC	__	CC	__	__	__
19._RUQ_847	AC	__	__	__	__	__	__	AG	AC	__	CC	__	CC	__
20._MITC-000297	AC	__	__	__	__	__	__	AG	AC	__	CC	__	CC	__
21._ICS_1_Fld#_73_Plt#_2	AC	__	__	__	__	__	__	AG	AC	__	CC	__	CC	__
22._ICS1	__	__	__	__	__	__	__	CC	CC	__	CC	__	__	__
23._ICS_1	GG	__	__	AA	__	__	__	__	CC	__	CG	__	AA	__

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	AC	CT	CC	AG	AC	TT	AG	GT	AG	CT	AA	AT	GT	GG
1._RUQ_847	AC	CT	CC	AG	AC	TT	AG	GT	AG	CT	AA	AT	GT	GG
2._ICS_1	__	__	__	__	__	__	AG	__	__	__	AA	__	__	__
3._ICS_1	__	__	__	__	__	__	AG	__	__	__	AA	__	__	__
4._ICS_1	__	__	__	__	__	__	AG	__	__	__	AA	__	__	__
5._ICS_1	__	__	__	__	__	__	AG	__	__	__	AA	__	__	__
6._ICS_1	__	__	__	__	__	__	AG	__	__	__	AA	__	__	__
7._RUQ_847	__	__	__	__	__	__	AG	__	__	__	AA	__	__	__
8._ICS_1	__	__	__	__	__	__	AG	__	__	__	AA	__	__	__
9._ICS_1	__	__	__	__	__	__	AG	__	__	__	AA	__	__	__
10._RUQ_847	__	__	__	AG	__	__	AG	__	__	__	AA	__	__	__
11._RUQ_847	__	__	__	__	__	__	AG	__	__	__	AA	__	__	__
12._NA	__	__	__	AG	__	__	AG	__	__	__	AA	__	__	__
13._NA	__	__	__	AG	__	__	AG	__	__	__	AA	__	__	__
14._NA	__	__	__	AG	__	__	AG	__	__	__	AA	__	__	__
15._NA	__	__	__	AG	__	__	AG	__	__	__	AA	__	__	__
16._NA	__	__	__	AG	__	__	AG	__	__	__	AA	__	__	__
17._NA	__	__	__	AG	__	__	AG	__	__	__	AA	__	__	__
18._RUQ_847	__	__	__	__	__	__	AG	__	__	__	AA	__	__	__
19._RUQ_847	__	__	__	AG	__	__	AG	__	__	__	AA	__	__	__
20._MITC-000297	__	__	__	AG	__	__	AG	__	__	__	AA	__	__	__
21._ICS_1_Fld#_73_Plt#_2	__	__	__	AG	__	__	AG	__	__	__	AA	__	__	__
22._ICS1	__	__	__	__	__	__	AG	__	__	__	CC	__	__	__
23._ICS_1	__	__	__	__	__	__	AA	__	__	__	AC	__	__	__

	57	58	59	60
_Input profile	AC	CT	CC	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._RUQ_847	AC	CT	CC	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._ICS_1	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._ICS_1	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._ICS_1	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._ICS_1	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._ICS_1	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._RUQ_847	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._ICS_1	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._ICS_1	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._RUQ_847	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._RUQ_847	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._NA	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._NA	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._NA	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._NA	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
16._NA	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
17._NA	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
18._RUQ_847	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
19._RUQ_847	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
20._MITC-000297	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
21._ICS_1_Fld#_73_Plt#_2	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
22._ICS1	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
23._ICS_1	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: ICS_1 RUQ_847B

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

1._ICS_1 RUQ_847

identical
60 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

2._ICS_1

96.2 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8903 8

Dapeng Zhang, 2016

3._ICS_1

96.2 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8903 6

Dapeng Zhang, 2016

4._ICS_1

96.2 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8903 5

Dapeng Zhang, 2016

5._ICS_1

96.2 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8903 3

Dapeng Zhang, 2016

6._ICS_1

96.2 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8903 1

Dapeng Zhang, 2016

7._ICS_1 RUQ_847

96.2 %
13 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

8._ICS_1

95.8 %
12 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8903 7

Dapeng Zhang, 2016

9._ICS_1

95.8 %
12 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: San Juan Block4

Dapeng Zhang, 2016

10._ICS_1 RUQ_847

93.3 %
15 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

11._ICS_1 RUQ_847

92.3 %
13 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

12._ICS_1 NA

90.5 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

13._ICS_1 NA

90.5 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

14._ICS_1 NA

90.5 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

15._ICS_1 NA

90.5 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

16._ICS_1 NA

90.5 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

17._ICS_1 NA

90 %
20 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

18._ICS_1 RUQ_847

85.7 %
7 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Location: GBR207

Jocelyn De Wever et al., 2019

19._ICS_1 RUQ_847

67.6 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

20._ICS_1 MITC-000297

67.6 %
17 shared markers

View View all Clone Any

USDA-SHRS, United States of America

21._ICS_1 ICS_1_Fld#_73_Plt#_2

67.6 %
17 shared markers

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USDA-TARS, United States of America

Location: Field: 73, Tree: 2

22._ICS_1 ICS1

64.3 %
7 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam

Location: CEFORTT

Jocelyn De Wever et al., 2019

23._ICS_1

50 %
13 shared markers

View View all Clone Any

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1527	2	TcSNP1524	3	TcSNP1458	4	TcSNP1404	5	TcSNP1401
6	TcSNP1293	7	TcSNP1275	8	TcSNP1253	9	TcSNP1237	10	TcSNP1230
11	TcSNP1205	12	TcSNP1144	13	TcSNP1112	14	TcSNP1062	15	TcSNP1053
16	TcSNP1019	17	TcSNP1010	18	TcSNP999	19	TcSNP998	20	TcSNP945
21	TcSNP899	22	TcSNP872	23	TcSNP836	24	TcSNP835	25	TcSNP823
26	TcSNP800	27	TcSNP739	28	TcSNP731	29	TcSNP723	30	TcSNP702
31	TcSNP660	32	TcSNP645	33	TcSNP644	34	TcSNP642	35	TcSNP640
36	TcSNP602	37	TcSNP591	38	TcSNP589	39	TcSNP577	40	TcSNP546
41	TcSNP529	42	TcSNP522	43	TcSNP519	44	TcSNP421	45	TcSNP363
46	TcSNP329	47	TcSNP305	48	TcSNP290	49	TcSNP230	50	TcSNP194
51	TcSNP189	52	TcSNP176	53	TcSNP144	54	TcSNP143	55	TcSNP131
56	TcSNP52	57	TcSNP49	58	TcSNP33	59	TcSNP19	60	TcSNP13