SNP Profiles of TSA 656 View Data

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_Input profile	AA	CT	CG	AG	AA	AT	GG	GT	CC	AA	GG	CC	CC	GG
1._TSA_656___	__	__	CG	__	__	__	__	GT	__	__	__	CC	__	GG
2._TSA_656___	__	__	CG	__	__	__	__	GT	__	__	__	__	__	__
3._TSA_656___	__	__	CG	__	__	__	__	GT	__	__	__	CC	__	GG
4._TSA_656___	__	__	CG	__	__	__	__	GT	__	__	__	CC	__	GG
5._TSA_656___	__	__	CG	__	__	__	__	GT	__	__	__	CC	__	GG
6._TSA_656___	__	__	CG	__	__	__	__	GT	__	__	__	CC	__	GG
7._TSA_656___	__	__	CG	__	__	__	__	GT	__	__	__	CC	__	GG
8._TSA_656___	__	__	CG	__	__	__	__	GT	__	__	__	CC	__	GG
9._TSA_656___	__	__	CG	__	__	__	__	GT	__	__	__	CC	__	GG
10._TSA_656___	__	__	CG	__	__	__	__	GT	__	__	__	CC	__	GG
11._TSA_656___	__	__	CG	__	__	__	__	GT	__	__	__	CC	__	GG
12._TSA_656___	__	__	CG	__	__	__	__	GT	__	__	__	CC	__	GG
13._TSA_656___	__	__	CC	__	__	__	__	GT	__	__	__	CT	__	AG
14._TSA_656___	__	__	CC	__	__	__	__	GT	__	__	__	CT	__	AG
15._TSA_656___	__	__	CC	__	__	__	__	GT	__	__	__	CT	__	AG
16._TSA_656___	__	__	CC	__	__	__	__	GT	__	__	__	CT	__	AG
17._TSA_656___	__	__	CC	__	__	__	__	GT	__	__	__	CT	__	AG
18._TSA_656___	__	__	CC	__	__	__	__	GT	__	__	__	CT	__	AG
19._TSA_656___	__	__	CC	__	__	__	__	GT	__	__	__	CT	__	AG
20._TSA_656___	__	__	CC	__	__	__	__	GT	__	__	__	CT	__	AG
21._TSA_656___	__	__	CC	__	__	__	__	GT	__	__	__	CT	__	AG
22._TSA_656___	__	__	CC	__	__	__	__	GT	__	__	__	CT	__	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CC	AA	CT	CC	AA	GG	GG	CC	CT	AT	CC	TT	CC	AG
1._TSA_656___	__	__	__	__	AA	__	__	CC	__	__	__	__	__	__
2._TSA_656___	__	__	__	CC	AA	__	GG	CC	__	__	CC	__	__	AG
3._TSA_656___	__	__	__	__	AA	__	__	CC	__	__	__	__	__	__
4._TSA_656___	__	__	__	__	AA	__	__	CC	__	__	__	__	__	__
5._TSA_656___	__	__	__	__	AA	__	__	CC	__	__	__	__	__	__
6._TSA_656___	__	__	__	__	AA	__	__	CC	__	__	__	__	__	__
7._TSA_656___	__	__	__	__	AA	__	__	CC	__	__	__	__	__	__
8._TSA_656___	__	__	__	CC	AA	__	GG	CC	CC	__	CC	__	__	AG
9._TSA_656___	__	__	__	CC	AA	__	GG	CC	CC	__	CC	__	__	AG
10._TSA_656___	__	__	__	CC	AA	__	GG	CC	CC	__	CC	__	__	AG
11._TSA_656___	__	__	__	CC	AA	__	GG	CC	CC	__	CC	__	__	AG
12._TSA_656___	__	__	__	CC	AA	__	GG	CC	CC	__	CC	__	__	AG
13._TSA_656___	__	__	__	__	AA	__	__	CG	__	__	__	__	__	__
14._TSA_656___	__	__	__	__	AA	__	__	CG	__	__	__	__	__	__
15._TSA_656___	__	__	__	__	AA	__	__	CG	__	__	__	__	__	__
16._TSA_656___	__	__	__	__	AA	__	__	CG	__	__	__	__	__	__
17._TSA_656___	__	__	__	__	AA	__	__	CG	__	__	__	__	__	__
18._TSA_656___	__	__	__	CT	AA	__	GG	CG	CG	__	CC	__	__	AA
19._TSA_656___	__	__	__	CT	AA	__	GG	CG	CG	__	CC	__	__	AA
20._TSA_656___	__	__	__	CT	AA	__	GG	CG	CG	__	CC	__	__	AA
21._TSA_656___	__	__	__	CT	AA	__	GG	CG	CG	__	CC	__	__	AA
22._TSA_656___	__	__	__	CT	AA	__	__	CG	CG	__	CC	__	__	AA

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	GG	TT	CC	AG	CC	GG	TT	CC	CC	AT	GG	AG	AA	CC
1._TSA_656___	GG	__	__	AG	__	__	__	__	CC	__	GG	__	AA	__
2._TSA_656___	GG	TT	__	__	__	__	__	CC	CC	__	GG	__	AA	__
3._TSA_656___	GG	__	__	AA	__	__	__	__	CC	__	GG	__	AA	__
4._TSA_656___	GG	__	__	AA	__	__	__	__	CC	__	GG	__	AA	__
5._TSA_656___	GG	__	__	AA	__	__	__	__	CC	__	GG	__	AA	__
6._TSA_656___	GG	__	__	AA	__	__	__	__	CC	__	GG	__	AA	__
7._TSA_656___	GG	__	__	AA	__	__	__	__	CC	__	GG	__	AA	__
8._TSA_656___	GG	CT	__	AA	__	__	__	CC	CC	__	GG	__	AA	__
9._TSA_656___	GG	CT	__	AA	__	__	__	CC	CC	__	GG	__	AA	__
10._TSA_656___	GG	CT	__	AA	__	__	__	CC	CC	__	GG	__	AA	__
11._TSA_656___	GG	CT	__	AA	__	__	__	CC	CC	__	GG	__	AA	__
12._TSA_656___	GG	CT	__	AA	__	__	__	CC	CC	__	GG	__	AA	__
13._TSA_656___	GG	__	__	AG	__	__	__	__	AC	__	CG	__	AC	__
14._TSA_656___	GG	__	__	AG	__	__	__	__	AC	__	CG	__	AC	__
15._TSA_656___	GG	__	__	AG	__	__	__	__	AC	__	CG	__	AC	__
16._TSA_656___	GG	__	__	AG	__	__	__	__	AC	__	CG	__	AC	__
17._TSA_656___	GG	__	__	AG	__	__	__	__	AC	__	CG	__	AC	__
18._TSA_656___	GG	CT	__	AG	__	__	__	CC	AC	__	CG	__	AC	__
19._TSA_656___	GG	CT	__	AG	__	__	__	CC	AC	__	CG	__	AC	__
20._TSA_656___	GG	CT	__	AG	__	__	__	CC	AC	__	CG	__	AC	__
21._TSA_656___	GG	CT	__	AG	__	__	__	CC	AC	__	CG	__	AC	__
22._TSA_656___	GG	CT	__	AG	__	__	__	CC	AC	__	CG	__	AC	__

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	AA	CC	AA	AA	AA	TT	AA	GG	AG	TT	AC	AA	GT	TT
1._TSA_656___	__	__	__	__	__	__	AA	__	__	__	AC	__	__	__
2._TSA_656___	__	__	__	AA	__	__	AA	__	__	__	CC	__	__	__
3._TSA_656___	__	__	__	__	__	__	AA	__	__	__	AC	__	__	__
4._TSA_656___	__	__	__	__	__	__	AA	__	__	__	AC	__	__	__
5._TSA_656___	__	__	__	__	__	__	AA	__	__	__	AC	__	__	__
6._TSA_656___	__	__	__	__	__	__	AA	__	__	__	AC	__	__	__
7._TSA_656___	__	__	__	__	__	__	AA	__	__	__	AC	__	__	__
8._TSA_656___	__	__	__	AA	__	__	AA	__	__	__	AC	__	__	__
9._TSA_656___	__	__	__	AA	__	__	AA	__	__	__	AC	__	__	__
10._TSA_656___	__	__	__	AA	__	__	AA	__	__	__	AC	__	__	__
11._TSA_656___	__	__	__	AA	__	__	AA	__	__	__	AC	__	__	__
12._TSA_656___	__	__	__	AA	__	__	AA	__	__	__	AC	__	__	__
13._TSA_656___	__	__	__	__	__	__	AA	__	__	__	AC	__	__	__
14._TSA_656___	__	__	__	__	__	__	AA	__	__	__	AC	__	__	__
15._TSA_656___	__	__	__	__	__	__	AA	__	__	__	AC	__	__	__
16._TSA_656___	__	__	__	__	__	__	AA	__	__	__	AC	__	__	__
17._TSA_656___	__	__	__	__	__	__	AA	__	__	__	AC	__	__	__
18._TSA_656___	__	__	__	AG	__	__	AA	__	__	__	AC	__	__	__
19._TSA_656___	__	__	__	AG	__	__	AA	__	__	__	AC	__	__	__
20._TSA_656___	__	__	__	AG	__	__	AA	__	__	__	AC	__	__	__
21._TSA_656___	__	__	__	AG	__	__	AA	__	__	__	AC	__	__	__
22._TSA_656___	__	__	__	AG	__	__	AA	__	__	__	AC	__	__	__

	57	58	59	60
_Input profile	CC	TT	AC	CC	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._TSA_656___	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._TSA_656___	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._TSA_656___	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._TSA_656___	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._TSA_656___	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._TSA_656___	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._TSA_656___	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._TSA_656___	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._TSA_656___	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._TSA_656___	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._TSA_656___	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._TSA_656___	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._TSA_656___	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._TSA_656___	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._TSA_656___	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
16._TSA_656___	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
17._TSA_656___	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
18._TSA_656___	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
19._TSA_656___	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
20._TSA_656___	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
21._TSA_656___	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
22._TSA_656___	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: TSA_656 RUQ_1016

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

IMC
0.428 Sca
0.562

1._TSA_656 RUQ_1016

identical
13 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

2._TSA_656 RUQ_1016

97.1 %
17 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

3._TSA_656

96.2 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8825 10

Dapeng Zhang, 2016

4._TSA_656

96.2 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8825 6

Dapeng Zhang, 2016

5._TSA_656

96.2 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8825 3

Dapeng Zhang, 2016

6._TSA_656

96.2 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8825 2

Dapeng Zhang, 2016

7._TSA_656

96.2 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8825 1

Dapeng Zhang, 2016

8._TSA_656 GC-08-257-8-25

92.9 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

9._TSA_656 GC-08-257-8-25

92.9 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

10._TSA_656 GC-08-257-8-25

92.9 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

11._TSA_656 GC-08-257-8-25

92.9 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

12._TSA_656 GC-08-257-8-25

92.9 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

13._TSA_656

73.1 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8825 9

Dapeng Zhang, 2016

14._TSA_656

73.1 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8825 9

Dapeng Zhang, 2016

15._TSA_656

73.1 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8825 8

Dapeng Zhang, 2016

16._TSA_656

73.1 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8825 7

Dapeng Zhang, 2016

17._TSA_656

73.1 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8825 4

Dapeng Zhang, 2016

18._TSA_656 GC-08-257-8-25

69 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

19._TSA_656 GC-08-257-8-25

69 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

20._TSA_656 GC-08-257-8-25

69 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

21._TSA_656 GC-08-257-8-25

69 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

22._TSA_656 GC-08-257-8-25

67.5 %
20 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

Key to SNP Markers

Key to SNP Markers

1	TcSNP1527	2	TcSNP1524	3	TcSNP1458	4	TcSNP1404	5	TcSNP1401
6	TcSNP1293	7	TcSNP1275	8	TcSNP1253	9	TcSNP1237	10	TcSNP1230
11	TcSNP1205	12	TcSNP1144	13	TcSNP1112	14	TcSNP1062	15	TcSNP1053
16	TcSNP1019	17	TcSNP1010	18	TcSNP999	19	TcSNP998	20	TcSNP945
21	TcSNP899	22	TcSNP872	23	TcSNP836	24	TcSNP835	25	TcSNP823
26	TcSNP800	27	TcSNP739	28	TcSNP731	29	TcSNP723	30	TcSNP702
31	TcSNP660	32	TcSNP645	33	TcSNP644	34	TcSNP642	35	TcSNP640
36	TcSNP602	37	TcSNP591	38	TcSNP589	39	TcSNP577	40	TcSNP546
41	TcSNP529	42	TcSNP522	43	TcSNP519	44	TcSNP421	45	TcSNP363
46	TcSNP329	47	TcSNP305	48	TcSNP290	49	TcSNP230	50	TcSNP194
51	TcSNP189	52	TcSNP176	53	TcSNP144	54	TcSNP143	55	TcSNP131
56	TcSNP52	57	TcSNP49	58	TcSNP33	59	TcSNP19	60	TcSNP13