SNP Profiles of UF 273 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	AA	CT	CC	GG	GT	AA	CC	TT	AA	GT	AA	CC	AA
1._RUQ_1707	CT	AA	CT	CC	GG	GT	AA	CC	TT	AA	GT	AA	CC	AA
2._UF_273	__	__	__	__	__	__	__	CC	__	__	__	AA	__	__
3._UF_273	__	__	__	__	__	__	__	CC	__	__	__	AA	__	__
4._RUQ_1707	__	__	__	__	__	__	__	CC	__	__	__	AA	__	__
5._MITC-000717	__	__	__	__	__	__	__	CC	__	__	__	AA	__	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GG	AC	CC	AC	CC	AA	AA	CG	AA	CC	CC	TT	AA	CC
1._RUQ_1707	GG	AC	CC	AC	CC	AA	AA	CG	AA	CC	CC	TT	AA	CC
2._UF_273	GG	__	__	__	__	AC	__	CG	__	CC	GG	__	__	__
3._UF_273	GG	__	__	__	__	AC	__	CG	__	CC	GG	__	__	__
4._RUQ_1707	GG	__	__	__	__	AC	__	CG	__	CC	GG	__	__	__
5._MITC-000717	GG	__	__	__	__	CC	__	CC	__	AA	AA	__	__	__

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AA	CC	TT	GG	AG	CC	TT	CC	AA	CC	GG	AG	CC	AA
1._RUQ_1707	AA	CC	__	GG	AG	CC	TT	CC	AA	CC	GG	AG	CC	AA
2._UF_273	__	__	__	CC	AG	__	__	CC	__	GG	CC	AG	__	AA
3._UF_273	__	__	__	CC	AG	__	__	CC	__	GG	CC	AG	__	AA
4._RUQ_1707	__	__	__	CC	AG	__	__	CC	__	GG	CC	AG	__	AA
5._MITC-000717	__	__	__	CC	GG	__	__	AA	__	CC	CC	AA	__	GG

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	CT	CT	AA	CT	GG	TT	CT	GG	AA	CT	GG	GG	TT	AG
1._RUQ_1707	CT	CT	AA	CT	GG	TT	CT	GG	AA	CT	GG	GG	TT	AG
2._UF_273	__	__	__	__	GG	__	__	__	__	__	CC	__	__	__
3._UF_273	__	__	__	__	GG	__	__	__	__	__	CC	__	__	__
4._RUQ_1707	__	__	__	__	GG	__	__	__	__	__	CC	__	__	__
5._MITC-000717	__	__	__	__	AA	__	__	__	__	__	AA	__	__	__

	57	58	59	60
_Input profile	GG	CC	TT	AT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._RUQ_1707	GG	CC	TT	AT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._UF_273	__	GG	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._UF_273	__	GG	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._RUQ_1707	__	GG	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._MITC-000717	__	CC	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: UF_273 RUQ_1707B

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

1._UF_273 RUQ_1707

identical
59 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

View Data

Nac
0.826

2._UF_273

61.8 %
17 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Tree: Tree-2

Mars, 2018

3._UF_273

61.8 %
17 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Field: La Montana, Tree: 1

Mars, 2018

4._UF_273 RUQ_1707

61.8 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Mars, 2018

5._UF_273 MITC-000717

38.2 %
17 shared markers

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USDA-SHRS, United States of America

Mars, 2018

Key to SNP Markers

1	TcSNP13	2	TcSNP19	3	TcSNP33	4	TcSNP49	5	TcSNP52
6	TcSNP131	7	TcSNP143	8	TcSNP144	9	TcSNP176	10	TcSNP189
11	TcSNP194	12	TcSNP230	13	TcSNP290	14	TcSNP305	15	TcSNP329
16	TcSNP363	17	TcSNP421	18	TcSNP519	19	TcSNP522	20	TcSNP529
21	TcSNP546	22	TcSNP577	23	TcSNP589	24	TcSNP591	25	TcSNP602
26	TcSNP640	27	TcSNP642	28	TcSNP644	29	TcSNP645	30	TcSNP660
31	TcSNP702	32	TcSNP723	33	TcSNP731	34	TcSNP739	35	TcSNP800
36	TcSNP823	37	TcSNP835	38	TcSNP836	39	TcSNP872	40	TcSNP899
41	TcSNP945	42	TcSNP998	43	TcSNP999	44	TcSNP1010	45	TcSNP1019
46	TcSNP1053	47	TcSNP1062	48	TcSNP1112	49	TcSNP1144	50	TcSNP1205
51	TcSNP1230	52	TcSNP1237	53	TcSNP1253	54	TcSNP1275	55	TcSNP1293
56	TcSNP1401	57	TcSNP1404	58	TcSNP1458	59	TcSNP1524	60	TcSNP1527

SNP Profiles of UF 273 View Data

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Input profile: UF_273 RUQ_1707B

1._UF_273 RUQ_1707

identical 59 shared markers

2._UF_273

61.8 % 17 shared markers

3._UF_273

61.8 % 17 shared markers

4._UF_273 RUQ_1707

61.8 % 17 shared markers

5._UF_273 MITC-000717

38.2 % 17 shared markers

identical
59 shared markers

61.8 %
17 shared markers

61.8 %
17 shared markers

61.8 %
17 shared markers

38.2 %
17 shared markers