SNP Profiles of EET 397 [ECU] View Data

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_Input profile	AA	CT	CC	AG	TT	GG	GG	AA	GG	CC	CT	GG	CC	AA
1._EET_397_[ECU]___	AA	CT	CC	AG	TT	GG	GG	AA	GG	CC	CT	GG	CC	AA
2._EET_397_[ECU]___	__	__	CC	__	__	__	GG	__	__	CC	__	GG	__	__
3._EET_397_[ECU]___	__	__	CC	__	__	__	GG	__	__	CC	__	GG	__	__
4._EET_397_[ECU]___	__	__	CC	__	__	__	GG	__	__	__	__	__	__	__
5._EET_397_[ECU]___	__	__	CC	__	__	__	GG	__	__	CC	__	GG	__	__
6._EET_397_[ECU]___	__	__	CC	__	__	__	GG	__	__	CC	__	GG	__	__
7._EET_397_[ECU]___	__	__	CC	__	__	__	GG	__	__	CC	__	GG	__	__
8._EET_397_[ECU]___	__	__	CC	__	__	__	GG	__	__	CC	__	GG	__	__
9._EET_397_[ECU]___	__	__	CC	__	__	__	GG	__	__	CC	__	GG	__	__
10._EET_397_[ECU]___	__	__	CC	__	__	__	GG	__	__	CC	__	GG	__	__
11._EET_397_[ECU]___	__	__	CC	__	__	__	GG	__	__	CC	__	GG	__	__
12._EET_397_[ECU]___	__	__	CC	__	__	__	GG	__	__	CC	__	GG	__	__
13._EET_397_[ECU]___	__	__	CC	__	__	__	GG	__	__	CC	__	GG	__	__
14._EET_397_[ECU]___	__	__	CC	__	__	__	GG	__	__	CC	__	GG	__	__
15._EET_397_[ECU]___	__	__	CC	__	__	__	GG	__	__	CC	__	GG	__	__
16._EET_397_[ECU]___	__	__	CC	__	__	__	GG	__	__	CC	__	GG	__	__
17._EET_397_[ECU]___	__	__	CC	__	__	__	GG	__	__	CC	__	GG	__	__
18._EET_397_[ECU]___	__	__	CC	__	__	__	GG	__	__	CC	__	GG	__	__
19._EET_397_[ECU]___	__	__	GG	__	__	__	CC	__	__	__	__	GG	__	__
20._EET_397_[ECU]___	__	__	GG	__	__	__	CC	__	__	__	__	GG	__	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	CC	AA	CG	AG	CG	CT	AT	CC	TT	CC	AA	GG	TT
1._EET_397_[ECU]___	CT	CC	AA	CG	AG	CG	CT	AT	CC	TT	CC	AA	GG	TT
2._EET_397_[ECU]___	__	__	AA	__	__	CG	__	__	__	__	__	__	GG	__
3._EET_397_[ECU]___	__	__	AA	__	__	CG	__	__	__	__	__	__	GG	__
4._EET_397_[ECU]___	__	CC	AA	__	__	CG	__	__	CC	__	__	AA	GG	__
5._EET_397_[ECU]___	__	__	AA	__	__	CG	__	__	__	__	__	__	GG	__
6._EET_397_[ECU]___	__	__	AA	__	__	CG	__	__	__	__	__	__	GG	__
7._EET_397_[ECU]___	__	__	AA	__	__	CG	__	__	__	__	__	__	GG	__
8._EET_397_[ECU]___	__	__	AA	__	__	CG	__	__	__	__	__	__	GG	__
9._EET_397_[ECU]___	__	__	AA	__	__	CG	__	__	__	__	__	__	GG	__
10._EET_397_[ECU]___	__	__	AA	__	__	CG	__	__	__	__	__	__	GG	__
11._EET_397_[ECU]___	__	__	AA	__	__	CG	__	__	__	__	__	__	GG	__
12._EET_397_[ECU]___	__	CC	AA	__	AG	CG	CC	__	CC	__	__	AA	GG	TT
13._EET_397_[ECU]___	__	CC	AA	__	AG	CG	CC	__	CC	__	__	AA	GG	TT
14._EET_397_[ECU]___	__	CC	AA	__	AG	CG	CC	__	CC	__	__	AA	GG	TT
15._EET_397_[ECU]___	__	CC	AA	__	AG	CG	CC	__	CC	__	__	AA	GG	TT
16._EET_397_[ECU]___	__	CC	AA	__	AG	CG	CC	__	CC	__	__	AA	GG	TT
17._EET_397_[ECU]___	__	CC	AA	__	AG	CG	CC	__	CC	__	__	AA	GG	TT
18._EET_397_[ECU]___	__	CC	AA	__	AG	CG	CC	__	CC	__	__	AA	GG	TT
19._EET_397_[ECU]___	__	__	AA	__	AG	CG	GG	__	CC	__	__	AA	CC	__
20._EET_397_[ECU]___	__	__	AA	__	AG	CG	GG	__	CC	__	__	AA	CC	__

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CG	AG	CC	AG	TT	CT	CC	AA	CG	AG	AA	CC	AC	CC
1._EET_397_[ECU]___	CG	AG	CC	AG	TT	CT	CC	AA	CG	AG	AA	CC	AC	CC
2._EET_397_[ECU]___	__	AG	__	__	__	__	CC	__	CG	__	AA	__	__	__
3._EET_397_[ECU]___	__	AG	__	__	__	__	CC	__	CG	__	AA	__	__	__
4._EET_397_[ECU]___	__	__	__	__	__	CT	__	__	CG	__	AA	__	__	__
5._EET_397_[ECU]___	__	AA	__	__	__	__	CC	__	CG	__	AA	__	__	__
6._EET_397_[ECU]___	__	AA	__	__	__	__	CC	__	CG	__	AA	__	__	__
7._EET_397_[ECU]___	__	AA	__	__	__	__	CC	__	CG	__	AA	__	__	__
8._EET_397_[ECU]___	__	AA	__	__	__	__	CC	__	CG	__	AA	__	__	__
9._EET_397_[ECU]___	__	AA	__	__	__	__	CC	__	CG	__	AA	__	__	__
10._EET_397_[ECU]___	__	AA	__	__	__	__	CC	__	CG	__	AA	__	__	__
11._EET_397_[ECU]___	__	AA	__	__	__	__	CC	__	CG	__	AA	__	__	__
12._EET_397_[ECU]___	__	AA	__	__	__	CT	CC	__	CG	__	AA	__	__	__
13._EET_397_[ECU]___	__	AA	__	__	__	CT	CC	__	CG	__	AA	__	__	__
14._EET_397_[ECU]___	__	AA	__	__	__	CT	CC	__	CG	__	AA	__	__	__
15._EET_397_[ECU]___	__	AA	__	__	__	CT	CC	__	CG	__	AA	__	__	__
16._EET_397_[ECU]___	__	AA	__	__	__	CT	CC	__	CG	__	AA	__	__	__
17._EET_397_[ECU]___	__	AA	__	__	__	CT	CC	__	CG	__	AA	__	__	__
18._EET_397_[ECU]___	__	AA	__	__	__	CT	CC	__	CG	__	AA	__	__	__
19._EET_397_[ECU]___	__	__	__	__	__	AG	CC	__	CG	__	AA	__	__	__
20._EET_397_[ECU]___	__	__	__	__	__	AG	CC	__	CG	__	AA	__	__	__

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	AC	GG	AA	CT	AA	GG	AA	TT	AC	AA	TT	TT	CC	CT
1._EET_397_[ECU]___	AC	GG	AA	CT	AA	GG	AA	TT	AC	AA	TT	TT	CC	CT
2._EET_397_[ECU]___	__	__	__	__	AA	__	__	__	AC	__	__	__	__	__
3._EET_397_[ECU]___	__	__	__	__	AA	__	__	__	AC	__	__	__	__	__
4._EET_397_[ECU]___	__	GG	__	__	AA	__	__	__	CC	__	__	__	__	__
5._EET_397_[ECU]___	__	__	__	__	AA	__	__	__	AC	__	__	__	__	__
6._EET_397_[ECU]___	__	__	__	__	AA	__	__	__	AC	__	__	__	__	__
7._EET_397_[ECU]___	__	__	__	__	AA	__	__	__	AC	__	__	__	__	__
8._EET_397_[ECU]___	__	__	__	__	AA	__	__	__	AC	__	__	__	__	__
9._EET_397_[ECU]___	__	__	__	__	AA	__	__	__	AC	__	__	__	__	__
10._EET_397_[ECU]___	__	__	__	__	AA	__	__	__	AC	__	__	__	__	__
11._EET_397_[ECU]___	__	__	__	__	__	__	__	__	AC	__	__	__	__	__
12._EET_397_[ECU]___	__	GG	__	__	AA	__	__	__	AC	__	__	__	__	__
13._EET_397_[ECU]___	__	GG	__	__	AA	__	__	__	AC	__	__	__	__	__
14._EET_397_[ECU]___	__	GG	__	__	AA	__	__	__	AC	__	__	__	__	__
15._EET_397_[ECU]___	__	GG	__	__	AA	__	__	__	AC	__	__	__	__	__
16._EET_397_[ECU]___	__	GG	__	__	AA	__	__	__	AC	__	__	__	__	__
17._EET_397_[ECU]___	__	GG	__	__	AA	__	__	__	AC	__	__	__	__	__
18._EET_397_[ECU]___	__	GG	__	__	__	__	__	__	AC	__	__	__	__	__
19._EET_397_[ECU]___	__	GG	__	__	AA	__	__	__	AC	__	__	__	__	__
20._EET_397_[ECU]___	__	GG	__	__	AA	__	__	__	AC	__	__	__	__	__

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_Input profile	AA	CT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._EET_397_[ECU]___	AA	CT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._EET_397_[ECU]___	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._EET_397_[ECU]___	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._EET_397_[ECU]___	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._EET_397_[ECU]___	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._EET_397_[ECU]___	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._EET_397_[ECU]___	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._EET_397_[ECU]___	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._EET_397_[ECU]___	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._EET_397_[ECU]___	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._EET_397_[ECU]___	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._EET_397_[ECU]___	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._EET_397_[ECU]___	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._EET_397_[ECU]___	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._EET_397_[ECU]___	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
16._EET_397_[ECU]___	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
17._EET_397_[ECU]___	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
18._EET_397_[ECU]___	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
19._EET_397_[ECU]___	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
20._EET_397_[ECU]___	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: EET_397_[ECU] RUQ_759

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Ame
0.053 Nac
0.406 Sca
0.491

1._EET_397_[ECU] RUQ_759

identical
58 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Ame
0.053 Nac
0.406 Sca
0.491

2._EET_397_[ECU] RUQ_759

identical
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

3._EET_397_[ECU]

identical
13 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B F456 T11

Dapeng Zhang, 2016

4._EET_397_[ECU] RUQ_759

96.4 %
14 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

5._EET_397_[ECU]

96.2 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8846 9

Dapeng Zhang, 2016

6._EET_397_[ECU]

96.2 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8846 7

Dapeng Zhang, 2016

7._EET_397_[ECU]

96.2 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8846 6

Dapeng Zhang, 2016

8._EET_397_[ECU]

96.2 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8846 5

Dapeng Zhang, 2016

9._EET_397_[ECU]

96.2 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8846 4

Dapeng Zhang, 2016

10._EET_397_[ECU]

96.2 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8846 1

Dapeng Zhang, 2016

11._EET_397_[ECU]

95.8 %
12 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8846 2

Dapeng Zhang, 2016

12._EET_397_[ECU] GC-08-274-8-46

95.2 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

13._EET_397_[ECU] GC-08-274-8-46

95.2 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

14._EET_397_[ECU] GC-08-274-8-46

95.2 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

15._EET_397_[ECU] GC-08-274-8-46

95.2 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

16._EET_397_[ECU] GC-08-274-8-46

95.2 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

17._EET_397_[ECU] GC-08-274-8-46

95.2 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

18._EET_397_[ECU] GC-08-274-8-46

95 %
20 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

19._EET_397_[ECU] RUQ_759

70.6 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

20._EET_397_[ECU] EET_397_[ECU]_Fld#_117_Plt#_2

70.6 %
17 shared markers

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USDA-TARS, United States of America

Location: Field: 117, Tree: 2

Key to SNP Markers

Key to SNP Markers

1	TcSNP1527	2	TcSNP1524	3	TcSNP1458	4	TcSNP1404	5	TcSNP1293
6	TcSNP1275	7	TcSNP1253	8	TcSNP1230	9	TcSNP1205	10	TcSNP1144
11	TcSNP1112	12	TcSNP1062	13	TcSNP1053	14	TcSNP1019	15	TcSNP1010
16	TcSNP999	17	TcSNP998	18	TcSNP945	19	TcSNP899	20	TcSNP872
21	TcSNP836	22	TcSNP835	23	TcSNP823	24	TcSNP800	25	TcSNP739
26	TcSNP731	27	TcSNP723	28	TcSNP702	29	TcSNP660	30	TcSNP645
31	TcSNP644	32	TcSNP642	33	TcSNP640	34	TcSNP602	35	TcSNP591
36	TcSNP589	37	TcSNP577	38	TcSNP546	39	TcSNP529	40	TcSNP522
41	TcSNP519	42	TcSNP421	43	TcSNP363	44	TcSNP329	45	TcSNP305
46	TcSNP290	47	TcSNP230	48	TcSNP194	49	TcSNP189	50	TcSNP176
51	TcSNP144	52	TcSNP143	53	TcSNP131	54	TcSNP52	55	TcSNP49
56	TcSNP33	57	TcSNP19	58	TcSNP13