SNP Profiles of EQX 69 [EQX] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AT	TT	CG	GG	AG	TT	GT	TT	AA	GT	CT	TT	GG	CC
1._RUQ_100B	AT	TT	CG	GG	AG	TT	GT	TT	AA	GT	CT	TT	GG	CC
2._RUQ_100	__	__	CG	__	__	__	__	TT	__	__	__	__	__	__
3._EQX_69_[EQX]	__	__	CG	__	__	__	__	TT	__	__	CT	__	GG	__
4._EQX_69_[EQX]	__	__	CG	__	__	__	__	TT	__	__	CT	__	GG	__
5._EQX_69_[EQX]	__	__	CG	__	__	__	__	TT	__	__	CT	__	GG	__
6._EQX_69_[EQX]	__	__	CG	__	__	__	__	TT	__	__	CT	__	GG	__
7._EQX_69_[EQX]	__	__	CG	__	__	__	__	TT	__	__	CT	__	GG	__
8._EQX_69_[EQX]	__	__	CG	__	__	__	__	TT	__	__	CT	__	GG	__
9._EQX_69_[EQX]	__	__	CG	__	__	__	__	TT	__	__	CT	__	GG	__
10._EQX_69_[EQX]	__	__	CG	__	__	__	__	TT	__	__	CT	__	GG	__
11._RUQ_100	__	__	CG	__	__	__	__	TT	__	__	CT	__	GG	__
12._EQX_69_[EQX]	__	__	CG	__	__	__	__	TT	__	__	CT	__	GG	__
13._GC-01-008-1-08	__	__	CG	__	__	__	__	TT	__	__	CT	__	GG	__
14._GC-01-008-1-08	__	__	CG	__	__	__	__	TT	__	__	CT	__	GG	__
15._GC-01-008-1-08	__	__	CG	__	__	__	__	TT	__	__	CT	__	GG	__
16._GC-01-008-1-08	__	__	CG	__	__	__	__	TT	__	__	CT	__	GG	__
17._GC-01-008-1-08	__	__	CG	__	__	__	__	TT	__	__	CT	__	GG	__
18._GC-01-008-1-08	__	__	CG	__	__	__	__	TT	__	__	CT	__	GG	__
19._GC-01-008-1-08	__	__	CG	__	__	__	__	TT	__	__	CT	__	GG	__
20._GC-01-008-1-08	__	__	CG	__	__	__	__	TT	__	__	CT	__	GG	__
21._GC-01-008-1-08	__	__	CG	__	__	__	__	TT	__	__	CT	__	GG	__
22._GC-01-8-1-8	__	__	CG	__	__	__	__	AA	__	__	__	__	GG	__
23._RUQ_100	__	__	CG	__	__	__	__	AA	__	__	__	__	GG	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	TT	CC	AG	CG	AG	CG	CT	AA	AC	TT	CC	AG	GG
1._RUQ_100B	AA	TT	CC	AG	CG	AG	CG	CT	AA	AC	TT	CC	AG	GG
2._RUQ_100	__	__	CC	AG	__	__	CG	__	__	AC	__	__	AG	GG
3._EQX_69_[EQX]	__	__	__	AG	__	__	CG	__	__	__	__	__	__	GG
4._EQX_69_[EQX]	__	__	__	AG	__	__	CG	__	__	__	__	__	__	GG
5._EQX_69_[EQX]	__	__	__	AG	__	__	CG	__	__	__	__	__	__	GG
6._EQX_69_[EQX]	__	__	__	AG	__	__	CG	__	__	__	__	__	__	GG
7._EQX_69_[EQX]	__	__	__	AG	__	__	CG	__	__	__	__	__	__	GG
8._EQX_69_[EQX]	__	__	__	AG	__	__	CG	__	__	__	__	__	__	GG
9._EQX_69_[EQX]	__	__	__	AG	__	__	CG	__	__	__	__	__	__	GG
10._EQX_69_[EQX]	__	__	__	AG	__	__	CG	__	__	__	__	__	__	GG
11._RUQ_100	__	__	__	AG	__	__	CG	__	__	__	__	__	__	GG
12._EQX_69_[EQX]	__	__	__	AG	__	__	CG	__	__	__	__	__	__	GG
13._GC-01-008-1-08	__	__	CC	AG	__	AG	CG	CC	__	AC	__	__	AG	GG
14._GC-01-008-1-08	__	__	CC	AG	__	AG	CG	CC	__	AC	__	__	AG	GG
15._GC-01-008-1-08	__	__	CC	AG	__	AG	CG	CC	__	AC	__	__	AG	GG
16._GC-01-008-1-08	__	__	CC	AG	__	AG	CG	CC	__	AC	__	__	AG	GG
17._GC-01-008-1-08	__	__	CC	AG	__	AG	CG	CC	__	AC	__	__	AG	GG
18._GC-01-008-1-08	__	__	CC	AG	__	AG	CG	CC	__	AC	__	__	AG	GG
19._GC-01-008-1-08	__	__	CC	AG	__	AG	CG	CC	__	AC	__	__	AG	GG
20._GC-01-008-1-08	__	__	CC	AG	__	AG	CG	CC	__	AC	__	__	AG	GG
21._GC-01-008-1-08	__	__	CC	AG	__	AG	CG	CC	__	AC	__	__	AG	GG
22._GC-01-8-1-8	__	__	__	AG	__	AG	CG	GG	__	AC	__	__	AG	CC
23._RUQ_100	__	__	__	AG	__	AG	CG	GG	__	AC	__	__	AG	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	TT	CC	AA	CC	AG	TT	CT	CC	AT	CG	AG	CC	CC	AC
1._RUQ_100B	TT	CC	AA	CC	AG	TT	CT	CC	AT	CG	AG	CC	CC	AC
2._RUQ_100	TT	__	__	__	__	__	CT	CC	__	CG	__	CC	__	__
3._EQX_69_[EQX]	__	__	AA	__	__	__	__	CC	__	CG	__	CC	__	__
4._EQX_69_[EQX]	__	__	AA	__	__	__	__	CC	__	CG	__	CC	__	__
5._EQX_69_[EQX]	__	__	AA	__	__	__	__	CC	__	CG	__	CC	__	__
6._EQX_69_[EQX]	__	__	AA	__	__	__	__	CC	__	CG	__	CC	__	__
7._EQX_69_[EQX]	__	__	AA	__	__	__	__	CC	__	CG	__	CC	__	__
8._EQX_69_[EQX]	__	__	AA	__	__	__	__	CC	__	CG	__	CC	__	__
9._EQX_69_[EQX]	__	__	AA	__	__	__	__	CC	__	CG	__	CC	__	__
10._EQX_69_[EQX]	__	__	AA	__	__	__	__	CC	__	CG	__	CC	__	__
11._RUQ_100	__	__	AA	__	__	__	__	CC	__	CG	__	CC	__	__
12._EQX_69_[EQX]	__	__	AA	__	__	__	__	CC	__	CG	__	CC	__	__
13._GC-01-008-1-08	CT	__	AA	__	__	__	CT	CC	__	CG	__	CC	__	__
14._GC-01-008-1-08	CT	__	AA	__	__	__	CT	CC	__	CG	__	CC	__	__
15._GC-01-008-1-08	CT	__	AA	__	__	__	CT	CC	__	CG	__	CC	__	__
16._GC-01-008-1-08	CT	__	AA	__	__	__	CT	CC	__	CG	__	CC	__	__
17._GC-01-008-1-08	CT	__	AA	__	__	__	CT	CC	__	CG	__	CC	__	__
18._GC-01-008-1-08	CT	__	AA	__	__	__	CT	CC	__	CG	__	CC	__	__
19._GC-01-008-1-08	CT	__	AA	__	__	__	CT	CC	__	CG	__	CC	__	__
20._GC-01-008-1-08	CT	__	AA	__	__	__	CT	CC	__	CG	__	CC	__	__
21._GC-01-008-1-08	CT	__	AA	__	__	__	CT	CC	__	CG	__	CC	__	__
22._GC-01-8-1-8	__	__	__	__	__	__	AG	CC	__	CG	__	CC	__	__
23._RUQ_100	__	__	__	__	__	__	AG	CC	__	CG	__	CC	__	__

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	CC	AC	AA	AA	TT	AA	GT	AG	CT	CC	AA	GG	GG	CC
1._RUQ_100B	CC	AC	AA	AA	TT	AA	GT	AG	CT	CC	AA	GG	GG	CC
2._RUQ_100	__	__	AA	__	__	AA	__	__	__	CC	__	__	__	__
3._EQX_69_[EQX]	__	__	__	__	__	AA	__	__	__	CC	__	__	__	__
4._EQX_69_[EQX]	__	__	__	__	__	AA	__	__	__	CC	__	__	__	__
5._EQX_69_[EQX]	__	__	__	__	__	AA	__	__	__	CC	__	__	__	__
6._EQX_69_[EQX]	__	__	__	__	__	AA	__	__	__	CC	__	__	__	__
7._EQX_69_[EQX]	__	__	__	__	__	AA	__	__	__	CC	__	__	__	__
8._EQX_69_[EQX]	__	__	__	__	__	AA	__	__	__	CC	__	__	__	__
9._EQX_69_[EQX]	__	__	__	__	__	AA	__	__	__	CC	__	__	__	__
10._EQX_69_[EQX]	__	__	__	__	__	AA	__	__	__	CC	__	__	__	__
11._RUQ_100	__	__	__	__	__	AA	__	__	__	CC	__	__	__	__
12._EQX_69_[EQX]	__	__	__	__	__	AA	__	__	__	__	__	__	__	__
13._GC-01-008-1-08	__	__	AA	__	__	AA	__	__	__	CC	__	__	__	__
14._GC-01-008-1-08	__	__	AA	__	__	AA	__	__	__	CC	__	__	__	__
15._GC-01-008-1-08	__	__	AA	__	__	AA	__	__	__	CC	__	__	__	__
16._GC-01-008-1-08	__	__	AA	__	__	AA	__	__	__	CC	__	__	__	__
17._GC-01-008-1-08	__	__	AA	__	__	AA	__	__	__	CC	__	__	__	__
18._GC-01-008-1-08	__	__	AA	__	__	AA	__	__	__	CC	__	__	__	__
19._GC-01-008-1-08	__	__	AA	__	__	AA	__	__	__	CC	__	__	__	__
20._GC-01-008-1-08	__	__	AA	__	__	AA	__	__	__	CC	__	__	__	__
21._GC-01-008-1-08	__	__	AA	__	__	AA	__	__	__	__	__	__	__	__
22._GC-01-8-1-8	__	__	AA	__	__	AA	__	__	__	CC	__	__	__	__
23._RUQ_100	__	__	AA	__	__	AA	__	__	__	CC	__	__	__	__

	57	58	59
_Input profile	TT	CC	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._RUQ_100B	TT	CC	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._RUQ_100	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._EQX_69_[EQX]	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._EQX_69_[EQX]	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._EQX_69_[EQX]	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._EQX_69_[EQX]	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._EQX_69_[EQX]	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._EQX_69_[EQX]	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._EQX_69_[EQX]	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._EQX_69_[EQX]	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._RUQ_100	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._EQX_69_[EQX]	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._GC-01-008-1-08	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._GC-01-008-1-08	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._GC-01-008-1-08	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
16._GC-01-008-1-08	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
17._GC-01-008-1-08	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
18._GC-01-008-1-08	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
19._GC-01-008-1-08	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
20._GC-01-008-1-08	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
21._GC-01-008-1-08	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
22._GC-01-8-1-8	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
23._RUQ_100	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: EQX_69_[EQX] RUQ_100

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Ame
0.297 Cri
0.093 IMC
0.468 Sca
0.116

1._EQX_69_[EQX] RUQ_100B

identical
59 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

2._EQX_69_[EQX] RUQ_100

identical
16 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

3._EQX_69_[EQX]

identical
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1106 1

Dapeng Zhang, 2016

4._EQX_69_[EQX]

identical
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1106 2

Dapeng Zhang, 2016

5._EQX_69_[EQX]

identical
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1106 3

Dapeng Zhang, 2016

6._EQX_69_[EQX]

identical
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1106 12

Dapeng Zhang, 2016

7._EQX_69_[EQX]

identical
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1106 16

Dapeng Zhang, 2016

8._EQX_69_[EQX]

identical
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1106 10 > F

Dapeng Zhang, 2016

9._EQX_69_[EQX]

identical
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1106 14 > F

Dapeng Zhang, 2016

10._EQX_69_[EQX]

identical
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1106 7 > FP

Dapeng Zhang, 2016

11._EQX_69_[EQX] RUQ_100

identical
13 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

12._EQX_69_[EQX]

identical
12 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1106 9 > FP

Dapeng Zhang, 2016

13._EQX_69_[EQX] GC-01-008-1-08

95.2 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14 > FP3

14._EQX_69_[EQX] GC-01-008-1-08

95.2 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

15._EQX_69_[EQX] GC-01-008-1-08

95.2 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10 > FP2

16._EQX_69_[EQX] GC-01-008-1-08

95.2 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7 > FP4

17._EQX_69_[EQX] GC-01-008-1-08

95.2 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

18._EQX_69_[EQX] GC-01-008-1-08

95.2 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

19._EQX_69_[EQX] GC-01-008-1-08

95.2 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

20._EQX_69_[EQX] GC-01-008-1-08

95.2 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 16

Notes: 16

21._EQX_69_[EQX] GC-01-008-1-08

95 %
20 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9 > FP1

22._EQX_69_[EQX] GC-01-8-1-8

76.5 %
17 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 1, Rep: 6, Tree: 10 > FP2

Notes: Brazil_Selections_Poss_grandparent

23._EQX_69_[EQX] RUQ_100

76.5 %
17 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1527	2	TcSNP1524	3	TcSNP1458	4	TcSNP1404	5	TcSNP1401
6	TcSNP1293	7	TcSNP1275	8	TcSNP1253	9	TcSNP1230	10	TcSNP1205
11	TcSNP1144	12	TcSNP1112	13	TcSNP1062	14	TcSNP1053	15	TcSNP1019
16	TcSNP1010	17	TcSNP999	18	TcSNP998	19	TcSNP945	20	TcSNP899
21	TcSNP872	22	TcSNP836	23	TcSNP835	24	TcSNP823	25	TcSNP800
26	TcSNP739	27	TcSNP731	28	TcSNP723	29	TcSNP702	30	TcSNP660
31	TcSNP645	32	TcSNP644	33	TcSNP642	34	TcSNP640	35	TcSNP602
36	TcSNP591	37	TcSNP589	38	TcSNP577	39	TcSNP546	40	TcSNP529
41	TcSNP522	42	TcSNP519	43	TcSNP421	44	TcSNP363	45	TcSNP329
46	TcSNP305	47	TcSNP290	48	TcSNP230	49	TcSNP194	50	TcSNP189
51	TcSNP176	52	TcSNP144	53	TcSNP143	54	TcSNP131	55	TcSNP52
56	TcSNP49	57	TcSNP33	58	TcSNP19	59	TcSNP13