SNP Profiles of EQX /J [CHA] View Data

Show/Hide Profiles

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	GG	GG	CC	TT	AA	TT	AA	CT	CC	AA	GG	TT	GG	GT
1._RUQ_107	__	__	__	__	__	__	__	__	CC	__	__	__	__	GT
2._RUQ_107	__	__	__	__	__	__	__	__	CC	__	__	__	__	GT
3._EQX_/J_[CHA]	__	__	__	__	__	__	__	__	CC	__	__	__	__	GG
4._EQX_/J_[CHA]	__	__	__	__	__	__	__	__	CC	__	__	__	__	GG
5._EQX_/J_[CHA]	__	__	__	__	__	__	__	__	CC	__	__	__	__	GG
6._EQX_/J_[CHA]	__	__	__	__	__	__	__	__	CC	__	__	__	__	GG
7._GC-04-005-1-05	__	__	__	__	__	__	__	__	CC	__	__	__	__	GG
8._GC-04-005-1-05	__	__	__	__	__	__	__	__	CC	__	__	__	__	GG
9._GC-04-005-1-05	__	__	__	__	__	__	__	__	CC	__	__	__	__	GG
10._GC-04-005-1-05	__	__	__	__	__	__	__	__	CC	__	__	__	__	GG
11._RUQ_107	__	__	__	__	__	__	__	__	GG	__	__	__	__	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	GG	CC	TT	GG	CC	AA	CT	CC	AA	GG	GG	CC	CC
1._RUQ_107	__	__	__	__	__	__	__	__	CC	AA	__	__	CC	__
2._RUQ_107	__	__	CC	__	GG	__	__	__	__	AA	__	__	CC	__
3._EQX_/J_[CHA]	__	__	CC	__	GG	__	__	__	__	AA	__	__	CC	__
4._EQX_/J_[CHA]	__	__	CC	__	GG	__	__	__	__	AA	__	__	CC	__
5._EQX_/J_[CHA]	__	__	CC	__	GG	__	__	__	__	AA	__	__	CC	__
6._EQX_/J_[CHA]	__	__	CC	__	GG	__	__	__	__	AA	__	__	CC	__
7._GC-04-005-1-05	__	__	CC	__	GG	__	__	__	CC	AA	__	GG	CC	CC
8._GC-04-005-1-05	__	__	CC	__	GG	__	__	__	CC	AA	__	GG	CC	CC
9._GC-04-005-1-05	__	__	CC	__	GG	__	__	__	CC	AA	__	GG	CC	CC
10._GC-04-005-1-05	__	__	CC	__	GG	__	__	__	CC	AA	__	GG	CC	CC
11._RUQ_107	__	__	__	__	GG	__	__	__	__	AA	__	GG	GG	GG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AT	CC	TT	CC	AG	GG	CC	CC	AG	CC	GG	TT	CC	CC
1._RUQ_107	__	CC	__	__	AG	GG	CC	__	__	__	__	__	CC	CC
2._RUQ_107	__	__	__	__	__	GG	__	__	AG	__	__	__	__	CC
3._EQX_/J_[CHA]	__	__	__	__	__	GG	__	__	AA	__	__	__	__	CC
4._EQX_/J_[CHA]	__	__	__	__	__	GG	__	__	AA	__	__	__	__	CC
5._EQX_/J_[CHA]	__	__	__	__	__	GG	__	__	AA	__	__	__	__	CC
6._EQX_/J_[CHA]	__	__	__	__	__	GG	__	__	AA	__	__	__	__	CC
7._GC-04-005-1-05	__	CC	__	__	AA	GG	TT	__	AA	__	__	__	CC	CC
8._GC-04-005-1-05	__	CC	__	__	AA	GG	TT	__	AA	__	__	__	CC	CC
9._GC-04-005-1-05	__	CC	__	__	AA	GG	TT	__	AA	__	__	__	CC	CC
10._GC-04-005-1-05	__	CC	__	__	AA	GG	TT	__	AA	__	__	__	CC	CC
11._RUQ_107	__	CC	__	__	AG	CC	__	__	__	__	__	__	GG	CC

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	AA	GG	AA	AA	CC	AC	CC	CC	AA	AA	CT	AG	GG	AA
1._RUQ_107	__	GG	__	AA	__	__	__	__	AA	__	__	AG	__	__
2._RUQ_107	__	GG	__	AA	__	__	__	__	__	__	__	AG	__	__
3._EQX_/J_[CHA]	__	GG	__	AA	__	__	__	__	__	__	__	AG	__	__
4._EQX_/J_[CHA]	__	GG	__	AA	__	__	__	__	__	__	__	AG	__	__
5._EQX_/J_[CHA]	__	GG	__	AA	__	__	__	__	__	__	__	AG	__	__
6._EQX_/J_[CHA]	__	GG	__	AA	__	__	__	__	__	__	__	AG	__	__
7._GC-04-005-1-05	__	GG	__	AA	__	__	__	__	AA	__	__	AG	__	__
8._GC-04-005-1-05	__	GG	__	AA	__	__	__	__	AA	__	__	AG	__	__
9._GC-04-005-1-05	__	GG	__	AA	__	__	__	__	AA	__	__	AG	__	__
10._GC-04-005-1-05	__	GG	__	AA	__	__	__	__	AA	__	__	AG	__	__
11._RUQ_107	__	GG	__	AA	__	__	__	__	AA	__	__	AG	__	__

	57	58	59
_Input profile	TT	AA	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._RUQ_107	__	AA	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._RUQ_107	__	AA	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._EQX_/J_[CHA]	__	AC	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._EQX_/J_[CHA]	__	AC	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._EQX_/J_[CHA]	__	AC	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._EQX_/J_[CHA]	__	AC	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._GC-04-005-1-05	__	AC	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._GC-04-005-1-05	__	AC	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._GC-04-005-1-05	__	AC	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._GC-04-005-1-05	__	AC	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._RUQ_107	__	AA	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: EQX_/J_[CHA] RUQ_107

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

1._EQX_/J_[CHA] RUQ_107

identical
16 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

2._EQX_/J_[CHA] RUQ_107

identical
13 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

3._EQX_/J_[CHA]

88.5 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4105 8 > FP

Dapeng Zhang, 2016

4._EQX_/J_[CHA]

88.5 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4105 7 > FP

Dapeng Zhang, 2016

5._EQX_/J_[CHA]

88.5 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4105 1 > FP

Dapeng Zhang, 2016

6._EQX_/J_[CHA]

88.5 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4105 4

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

7._EQX_/J_[CHA] GC-04-005-1-05

85.7 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

8._EQX_/J_[CHA] GC-04-005-1-05

85.7 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

9._EQX_/J_[CHA] GC-04-005-1-05

85.7 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7 > FP2

10._EQX_/J_[CHA] GC-04-005-1-05

85.7 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8 > FP3

11._EQX_/J_[CHA] RUQ_107

64.7 %
17 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP131	2	TcSNP52	3	TcSNP49	4	TcSNP33	5	TcSNP19
6	TcSNP13	7	TcSNP1527	8	TcSNP1524	9	TcSNP1458	10	TcSNP1404
11	TcSNP1401	12	TcSNP1293	13	TcSNP1275	14	TcSNP1253	15	TcSNP1230
16	TcSNP1205	17	TcSNP1144	18	TcSNP1112	19	TcSNP1062	20	TcSNP1053
21	TcSNP1019	22	TcSNP1010	23	TcSNP999	24	TcSNP998	25	TcSNP945
26	TcSNP899	27	TcSNP872	28	TcSNP836	29	TcSNP835	30	TcSNP823
31	TcSNP800	32	TcSNP739	33	TcSNP731	34	TcSNP723	35	TcSNP702
36	TcSNP660	37	TcSNP645	38	TcSNP644	39	TcSNP642	40	TcSNP640
41	TcSNP602	42	TcSNP591	43	TcSNP589	44	TcSNP577	45	TcSNP546
46	TcSNP529	47	TcSNP522	48	TcSNP519	49	TcSNP421	50	TcSNP363
51	TcSNP329	52	TcSNP305	53	TcSNP290	54	TcSNP230	55	TcSNP194
56	TcSNP189	57	TcSNP176	58	TcSNP144	59	TcSNP143