SNP Profiles of POUND 25 /A   View Data

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 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCCCAACCAAGGAGCCAAAGAGAAAACC
1._NA_33___
CCCCAACCAAGGAGCCAAAGAGAAAACC
2._NA_33___
CCCCAACCAAGGAGCCAAAGAGAAAACC
3._NA_33___
CCCCAACCAAGGGGCCAAAGAGAAAGCC
4._NA_33___
__________CC________AG______
5._NA_33___
____________GG______________
6._NA_33___
CCCCAACCTTCCAGGGAACTAGTTTTGG
7._NA_33___
CCCCAACCTTCCAGGGAACTAGTTTTGG
8._NA_33___
CCCCAACCTTCCAGGGAACTAGTTTTGG
9._NA_33___
CCCCAACCTTCCAGGGAACTAGTTTTGG
10._NA_33___
CCCCAACCTTCCAGGGAACTAGTTTTGG
11._NA_33___
CCCCAACCTTCCAGGGAACTAGTTTTGG
12._NA_33___
CCCCAACCTTCCAGGGAACTAGTTTTGG
13._NA_33___
CCCCAACCTTCCAGGGAACTAGTTTTGG
14._NA_33___
CCCCAACCTTCCAGGGAACTAGTTTTGG
15._NA_33___
CCCCAACCTTCCAGGGAACTAGTTTTGG
16._NA_33___
CCCCAACCTTCCAGGGAACTAGTTTTGG
17._NA_33___
CCCC__CCTTCCAGGGAACTAGTTTTGG
18._NA_33___
__________CCAG__AA__________
19._NA_33___
__________CCAG__AA__________
20._NA_33___
__________CCAG__AA__________
21._NA_33___
__________CCAG__AA__________
22._NA_33___
__________CCAG__AA__________
23._NA_33___
__________CCAG__AA__________
24._NA_33___
__________CCAG__AA__________
25._NA_33___
__________CCAG__AA__________
26._NA_33___
__________CCAG__AA__________
27._NA_33___
__________CCAG__AA__________
28._NA_33___
__________CCAG__AA__________
29._NA_33___
__________CCAG__AA__________
30._NA_33___
__________CCAG__AA__________
31._NA_33___
__________CCAG__AA__________
32._NA_33___
__________CTAG__AA__________
33._NA_33___
__________CCGG__AA__________
34._NA_33___
__________CCGG__AA__________
35._NA_33___
__________CC__GG____AG______
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAACAAAAGGAAGGACAAGGAGCCAGGG
1._NA_33___
AAACAAAAGGAAGGACAAGGAGCCAGGG
2._NA_33___
AAACAAAAGGAAGGACAAGGAGCCAGGG
3._NA_33___
AAACAAAAGGAAGGCCAAGGAACCGGGG
4._NA_33___
____________CCAC__GG____CT__
5._NA_33___
__GT__________CC__CC________
6._NA_33___
____TTTTGGTTCCACTTCCAGGGCTCC
7._NA_33___
TTGTTTTTGGTTCCACTTCCAGGGCTCC
8._NA_33___
TTGTTTTTGGTTCCACTTCCAGGGCTCC
9._NA_33___
TTGTTTTTGGTTCCACTTCCAGGGCTCC
10._NA_33___
TTGTTTTTGGTTCCACTTCCAGGGCTCC
11._NA_33___
TTGTTTTTGGTTCCACTTCCAGGGCTCC
12._NA_33___
TTGTTTTTGGTTCCACTTCCAGGGCTCC
13._NA_33___
TTGTTTTTGGTTCCACTTCCAGGGCTCC
14._NA_33___
TTGTTTTTGGTTCCACTTCCAGGGCTCC
15._NA_33___
TTGTTTTTGGTTCCACTTCCAGGGCTCC
16._NA_33___
TTGTTTTT__TTCCACTTCCAGGGCTCC
17._NA_33___
TTGTTTTTGGTTCCACTTCCAGGGCTCC
18._NA_33___
____TT____TT__ACTTCCAGGGCTCC
19._NA_33___
__GTTT____TT__ACTTCCAGGGCTCC
20._NA_33___
__GTTT____TT__ACTTCCAGGGCTCC
21._NA_33___
__GTTT____TT__ACTTCCAGGGCTCC
22._NA_33___
__GTTT____TT__ACTTCCAGGGCTCC
23._NA_33___
__GTTT____TT__ACTTCCAGGGCTCC
24._NA_33___
__GTTT____TT__ACTTCCAGGGCTCC
25._NA_33___
__GTTT____TT__ACTTCCAGGGCTCC
26._NA_33___
__GTTT____TT__ACTTCCAGGGCTCC
27._NA_33___
__GTTT____TT__ACTTCCAGGGCTCC
28._NA_33___
__GTTT____TT__ACTTCCAGGGCTCC
29._NA_33___
__GTTT____TT__ACTTCCAGGGCTCC
30._NA_33___
__GTTT____TT__ACTTCCAGGGCTCC
31._NA_33___
__GTTT____TT__ACTTCCAGGGCTCC
32._NA_33___
__TTTT____TT__ACTTCGAGGGCTCC
33._NA_33___
__GTTT____TT__CCTTCCAGGGCCCC
34._NA_33___
__GTTT____TT__CCTTCCAAGGCCCC
35._NA_33___
__GT__TT____CCCCTTCCAAGGCC__
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AAGGACGGGGGGAGGGACTTTTGGGGAT
1._NA_33___
AAGGACGGGGGGAGGGACTTTTGGGGAT
2._NA_33___
AAGGACGGGGGGAGGGACTTTTGGGGAT
3._NA_33___
ATGGACCGAGGGAGGGACTTTTGGGGAA
4._NA_33___
__GGACGGGG______________GGAT
5._NA_33___
________AG____________GG____
6._NA_33___
__GGACCCGG__CTGGGTAATTGGGGAT
7._NA_33___
__GGACCCGG__CTGGGTAATTGGGGAT
8._NA_33___
TTGGACCCGGGGCTGGGTAATTGGGGAT
9._NA_33___
TTGGACCCGGGGCTGGGTAATTGGGGAT
10._NA_33___
TTGGACCCGGGGCTGGGTAATTGGGGAT
11._NA_33___
TTGGACCCGGGGCTGGGTAATTGGGGAT
12._NA_33___
TTGGACCCGGGGCTGGGTAATTGGGGAT
13._NA_33___
TTGGACCCGGGGCTGGGTAATTGGGGAT
14._NA_33___
TTGGACCCGGGGCTGGGTAATTGGGGAT
15._NA_33___
__GGACCCGG__CTGGGTAATTGGGGAT
16._NA_33___
TTGGACCCGGGGCTGGGTAATTGGGGAT
17._NA_33___
__GGACCCGG__CTGGGTAATTGGGGAT
18._NA_33___
____ACCCGG__CTGG____TT____AT
19._NA_33___
____ACCCGG__CTGG____TT____AT
20._NA_33___
____ACCCGG__CTGG____TT____AT
21._NA_33___
____ACCCGG__CTGG____TT____AT
22._NA_33___
____ACCCGG__CTGG____TT____AT
23._NA_33___
____ACCCGG__CTGG____TT____AT
24._NA_33___
____ACCCGG__CTGG____TT____AT
25._NA_33___
____ACCCGG__CTGG____TT____AT
26._NA_33___
____ACCCGG__CTGG____TT____AT
27._NA_33___
____ACCCGG__CTGG____TT____AT
28._NA_33___
____ACCCGG__CTGG____TT____AT
29._NA_33___
____ACCCGG__CTGG____TT____AT
30._NA_33___
____ACCCGG__CTGG____TT____AT
31._NA_33___
____ACCCGG__CTGG____TT____AT
32._NA_33___
____AACGAG__TTGG____AT____AT
33._NA_33___
____ACCGAG__CTGG____TT____AA
34._NA_33___
____ACGGAG__CTGG____TT____AA
35._NA_33___
__GGACCGAG__CT________GGGGAA
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGAGAGGGAACGAGAACCAGCCGGGGAC
1._NA_33___
GGAGAGGGAACGAGAACCAGCCGGGGAC
2._NA_33___
GGAGAGGGAACGAGAACCAGCCGGGGAC
3._NA_33___
GGAGGGGGAAGGAGACCCAGCCGGGGAA
4._NA_33___
CC________CG____________GGAC
5._NA_33___
________________CC______GGAA
6._NA_33___
CCAGAGGGAACGCTAACCAGGGGGGGAC
7._NA_33___
CCAGAGGGAACGCTAACCAGGGGGGGAC
8._NA_33___
CCAGAGGGAACG__AACCAGGGGGGGAC
9._NA_33___
CCAGAGGGAACG__AACCAGGGGGGGAC
10._NA_33___
CCAGAGGGAACG__AACCAGGGGGGGAC
11._NA_33___
CCAGAGGGAACG__AACCAGGGGGGGAC
12._NA_33___
CCAGAGGGAACG__AACCAGGGGGGGAC
13._NA_33___
CCAGAGGGAACG__AACCAGGGGGGGAC
14._NA_33___
CCAGAGGGAACG__AACCAGGGGGGGAC
15._NA_33___
CCAGAGGGAACGCTAACCAGGGGGGGAC
16._NA_33___
CCAGAGGGAACG__AACCAGGGGGGGAC
17._NA_33___
CCAGAGGGAACGCTAACCAGGGGGGGAC
18._NA_33___
______GG________CC__GG__GGAC
19._NA_33___
______GG________CC__GG__GGAC
20._NA_33___
______GG________CC__GG__GGAC
21._NA_33___
______GG________CC__GG__GGAC
22._NA_33___
______GG________CC__GG__GGAC
23._NA_33___
______GG________CC__GG__GGAC
24._NA_33___
______GG________CC__GG__GGAC
25._NA_33___
______GG________CC__GG__GGAC
26._NA_33___
______GG________CC__GG__GGAC
27._NA_33___
______GG________CC__GG__GGAC
28._NA_33___
______GG________CC__GG__GGAC
29._NA_33___
______GG________CC__GG__GGAC
30._NA_33___
______GG________CC__GG__GGAC
31._NA_33___
______GG________CC__GG__GGAC
32._NA_33___
______GG________CC__GG__GGAA
33._NA_33___
______GG________CC__GG__GGAA
34._NA_33___
______GG________CC__GG__GGAA
35._NA_33___
__________CC____CC__GG__GGAA
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GGGGAGAAAACCGGAAAACCAACCCGGG
1._NA_33___
GGGGAGAAAACCGGAAAACCAACCCGGG
2._NA_33___
GGGGAGAAAACCGGAAAACCAACCCGGG
3._NA_33___
GGGGAGAAAACCAGAAAACCAACCCGGG
4._NA_33___
__CC____________TT________GG
5._NA_33___
__CC______GGAG________CCTT__
6._NA_33___
CCCCCTAAAAGGGGTTTTGGTTCCCG__
7._NA_33___
CCCCCTAAAAGGGG__TTGGTTCCCG__
8._NA_33___
CCCCCTAAAAGGGGTTTTGGTTCCCG__
9._NA_33___
CCCCCTAAAAGGGGTTTTGGTTCCCG__
10._NA_33___
CCCCCTAAAAGGGGTTTTGGTTCCCG__
11._NA_33___
CCCCCTAAAAGGGGTTTTGGTTCCCG__
12._NA_33___
CCCCCTAAAAGGGGTTTTGGTTCCCG__
13._NA_33___
CCCCCTAAAAGGGGTTTTGGTTCCCG__
14._NA_33___
CCCCCTAAAAGGGGTTTTGGTTCCCG__
15._NA_33___
CCCCCTAAAAGGGGTTTTGGTTCCCG__
16._NA_33___
CCCCCTAAAAGGGGTTTTGGTTCCCG__
17._NA_33___
CCCCCTAAAAGGGGTTTTGGTTCCCG__
18._NA_33___
____CT____GG________________
19._NA_33___
____CT____GG________________
20._NA_33___
____CT____GG________________
21._NA_33___
____CT____GG________________
22._NA_33___
____CT____GG________________
23._NA_33___
____CT____GG________________
24._NA_33___
____CT____GG________________
25._NA_33___
____CT____GG________________
26._NA_33___
____CT____GG________________
27._NA_33___
____CT____GG________________
28._NA_33___
____CT____GG________________
29._NA_33___
____CT____GG________________
30._NA_33___
____CT____GG________________
31._NA_33___
____CT____GG________________
32._NA_33___
____CT____GG________________
33._NA_33___
____CT____GG________________
34._NA_33___
____CT____GG________________
35._NA_33___
__CCCT____GGAGTT____TTCC____
 71 72 73 74 75 76 77 78 79 80 81    
_Input profile
CCAGGGGGCCGGCGGGAAAGAGX_XX_XX_X
1._NA_33___
CCAGGGGGCCGGCGGGAAAGAGX_XX_XX_X
2._NA_33___
CCAGGGGGCCGGCGGGAAAGAGX_XX_XX_X
3._NA_33___
CGGGCGGGCCGGGGGGAAAAAGX_XX_XX_X
4._NA_33___
CCCT______________CT__X_XX_XX_X
5._NA_33___
CG____GG____________AGX_XX_XX_X
6._NA_33___
GGCTCCGGCCCCCGCCAACTAGX_XX_XX_X
7._NA_33___
GGCTCCGGCCCCCGCCAACTAGX_XX_XX_X
8._NA_33___
GGCTCCGGCCCCCGCCAACTAGX_XX_XX_X
9._NA_33___
GGCTCCGGCCCCCGCCAACTAGX_XX_XX_X
10._NA_33___
GGCTCCGGCCCCCGCCAACTAGX_XX_XX_X
11._NA_33___
GGCTCCGGCCCCCGCCAACTAGX_XX_XX_X
12._NA_33___
GGCTCCGGCCCCCGCCAACTAGX_XX_XX_X
13._NA_33___
GGCTCCGGCCCCCGCCAACTAGX_XX_XX_X
14._NA_33___
GGCTCCGGCCCCCGCCAACTAGX_XX_XX_X
15._NA_33___
GGCTCCGGCCCCCGCCAACTAGX_XX_XX_X
16._NA_33___
GGCTCCGGCCCCCGCCAACTAGX_XX_XX_X
17._NA_33___
GGCTCCGGCCCCCGCCAACTAGX_XX_XX_X
18._NA_33___
GGCT______CCCG__AACTAGX_XX_XX_X
19._NA_33___
GGCT______CCCG__AACTAGX_XX_XX_X
20._NA_33___
GGCT______CCCG__AACTAGX_XX_XX_X
21._NA_33___
GGCT______CCCG__AACTAGX_XX_XX_X
22._NA_33___
GGCT______CCCG__AACTAGX_XX_XX_X
23._NA_33___
GGCT______CCCG__AACTAGX_XX_XX_X
24._NA_33___
GGCT______CCCG__AACTAGX_XX_XX_X
25._NA_33___
GGCT______CCCG__AACTAGX_XX_XX_X
26._NA_33___
GGCT______CCCG__AACTAGX_XX_XX_X
27._NA_33___
GGCT______CCCG__AACTAGX_XX_XX_X
28._NA_33___
GGCT______CCCG__AACTAGX_XX_XX_X
29._NA_33___
GGCT______CCCG__AACTAGX_XX_XX_X
30._NA_33___
GGCT______CCCG__AACTAGX_XX_XX_X
31._NA_33___
GGCT______CCCG__AACTAGX_XX_XX_X
32._NA_33___
CCCC______CCGG__AACTAGX_XX_XX_X
33._NA_33___
CGCC______CCGG__AATTAGX_XX_XX_X
34._NA_33___
CGCC______CCGG__AATTAGX_XX_XX_X
35._NA_33___
CGCC____CC__________AGX_XX_XX_X

Input profile: NA_33

 
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Mars Center for Cocoa Science, Brazil
Location: Tree: FP 4
 Mars, 2018

1._NA_33 GC-01-6-1-6

identical
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: 1 > FP5
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

2._NA_33 MITC-000715

identical
81 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

3._NA_33 RUQ_1577

88.3 %
81 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

4._NA_33 NA33

63.6 %
22 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

5._NA_33 RUQ_1577

52.9 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
IMC
0.228 LCT
0.055 Nan
0.684

6._NA_33 GC-01-6-1-06

51.3 %
76 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: PL9
Notes: PL9 FP1
 Mars, 2018

7._NA_33 GC-01-6-1-06

50.6 %
77 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: PL12
Notes: PL12 FP4
 Mars, 2018

8._NA_33 GC-01-006-1-06

50.6 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP5
 Mars, 2018

9._NA_33 GC-01-006-1-06

50.6 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP6
 Mars, 2018

10._NA_33 GC-01-006-1-06

50.6 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP11
 Mars, 2018

11._NA_33 GC-01-006-1-06

50.6 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP8
 Mars, 2018

12._NA_33 GC-01-006-1-06

50.6 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP9
 Mars, 2018

13._NA_33 GC-01-006-1-06

50.6 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP13
 Mars, 2018

14._NA_33 GC-01-006-1-06

50.6 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16 > FP14
 Mars, 2018

15._NA_33 GC-01-6-1-06

50 %
78 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: PL3
Notes: PL3 FP2
 Mars, 2018

16._NA_33 GC-01-006-1-06

50 %
78 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP12
 Mars, 2018

17._NA_33 GC-01-6-1-06

49.4 %
77 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: PL14
Notes: PL14 FP3
 Mars, 2018

18._NA_33

48.5 %
33 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1104 9 > FP
 Dapeng Zhang, 2016

19._NA_33

47.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1104 14 > F
 Dapeng Zhang, 2016

20._NA_33

47.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1104 1 > FP
 Dapeng Zhang, 2016

21._NA_33

47.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1104 10 > F
 Dapeng Zhang, 2016

22._NA_33

47.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1104 11 > F
 Dapeng Zhang, 2016

23._NA_33

47.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1104 12 > F
 Dapeng Zhang, 2016

24._NA_33

47.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1104 15 > F
 Dapeng Zhang, 2016

25._NA_33

47.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1104 16 > F
 Dapeng Zhang, 2016

26._NA_33

47.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1104 2 > FP
 Dapeng Zhang, 2016

27._NA_33

47.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1104 3 > FP
 Dapeng Zhang, 2016

28._NA_33

47.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1104 6 > FP
 Dapeng Zhang, 2016

29._NA_33

47.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1104 7 > FP
 Dapeng Zhang, 2016

30._NA_33

47.1 %
34 shared markers

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Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia
Location: KW 397 I-032
 Dapeng Zhang, 2016

31._NA_33

47.1 %
34 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: Row 24 C0211 44
 Dapeng Zhang, 2016

32._NA_33

45.6 %
34 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana
Location: M6 18, 19
 Dapeng Zhang, 2016

33._NA_33 RUQ_1577

41.2 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

34._NA_33

41.2 %
34 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A D371 T2
 Dapeng Zhang, 2016

35._NA_33 RUQ_1577

40.3 %
36 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 

  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1383 20TcSNP1414
21TcSNP1439 22TcSNP144 23TcSNP1442 24TcSNP1458 25TcSNP1484
26TcSNP150 27TcSNP151 28TcSNP1520 29TcSNP154 30TcSNP174
31TcSNP193 32TcSNP226 33TcSNP230 34TcSNP240 35TcSNP242
36TcSNP25 37TcSNP28 38TcSNP316 39TcSNP32 40TcSNP329
41TcSNP364 42TcSNP372 43TcSNP413 44TcSNP418 45TcSNP42
46TcSNP429 47TcSNP430 48TcSNP448 49TcSNP497 50TcSNP521
51TcSNP529 52TcSNP547 53TcSNP560 54TcSNP561 55TcSNP577
56TcSNP591 57TcSNP60 58TcSNP602 59TcSNP619 60TcSNP653
61TcSNP689 62TcSNP723 63TcSNP731 64TcSNP75 65TcSNP751
66TcSNP776 67TcSNP799 68TcSNP823 69TcSNP836 70TcSNP860
71TcSNP872 72TcSNP891 73TcSNP894 74TcSNP899 75TcSNP90
76TcSNP917 77TcSNP929 78TcSNP944 79TcSNP953 80TcSNP994
81TcSNP998