SNP Profiles of CCN 51 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AC	AG	AA	AA	AG	AG	AC	AA	GG	AG	AA	AA	CC
1._CCN_51___	CC	AC	AG	AA	AA	AG	AG	AC	AA	GG	AG	AA	AA	CC
2._CCN_51___	CC	AC	AG	AA	AA	AG	AG	AC	AA	GG	AG	AA	AA	CC
3._CCN_51___	__	__	__	__	__	__	AG	__	__	__	__	__	__	__
4._CCN_51___	__	__	__	__	__	__	AG	__	__	__	__	__	__	__
5._CCN_51___	__	__	__	__	__	__	AG	__	__	__	__	__	__	__
6._CCN_51___	__	__	__	__	__	__	AG	__	__	__	__	__	__	__
7._CCN_51___	CC	AC	AG	AA	TT	CT	AG	GT	AA	CC	AG	TT	__	GG
8._CCN_51___	__	__	__	__	__	CT	AG	__	AA	__	__	__	__	__
9._CCN_51___	__	__	__	__	__	CT	AG	__	AA	__	__	__	__	__
10._CCN_51___	__	__	__	__	__	CT	AG	__	AA	__	__	__	__	__
11._CCN_51___	__	__	__	__	__	CT	AG	__	AA	__	__	__	__	__
12._CCN_51___	__	__	__	__	__	CT	AG	__	AA	__	__	__	__	__
13._CCN_51___	__	__	__	__	__	CT	AG	__	AA	__	__	__	__	__
14._CCN_51___	__	__	__	__	__	CT	AG	__	AA	__	__	__	__	__
15._CCN_51___	__	__	__	__	__	CT	AG	__	AA	__	__	__	__	__
16._CCN_51___	CC	AC	AG	AA	TT	CT	AG	GT	AA	CC	AG	TT	TT	GG
17._CCN_51___	CC	AC	AG	AA	TT	CT	AG	GT	AA	CC	AG	TT	TT	GG
18._CCN_51___	CC	AC	AG	AA	TT	CT	AG	GT	AA	CC	AG	TT	TT	GG
19._CCN_51___	__	__	__	__	__	CT	__	__	AA	__	__	__	__	__
20._CCN_51___	__	__	__	__	__	CT	AG	__	AA	__	__	__	__	__
21._CCN_51___	CC	AC	AG	AA	TT	CT	__	GT	AA	CC	AG	__	TT	__
22._CCN_51___	CC	AC	AG	AA	TT	CT	AG	GT	AA	CC	AG	TT	TT	GG
23._CCN_51___	CC	AC	AG	AA	TT	CT	AG	GT	AA	CC	AG	TT	TT	GG
24._CCN_51___	CC	AC	AG	AA	TT	CT	AG	GT	AA	CC	AG	TT	TT	GG
25._CCN_51___	__	__	__	__	__	TT	AA	__	AA	__	__	__	__	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AG	AA	AG	AA	AC	GG	AA	AG	AC	AA	CC	AG	AA	GG
1._CCN_51___	AG	AA	AG	AA	AC	GG	AA	AG	AC	AA	CC	AG	AA	GG
2._CCN_51___	AG	AA	AG	AA	AC	GG	AA	AG	AC	AA	CC	AG	AA	GG
3._CCN_51___	__	TT	__	__	__	__	__	__	AC	__	GG	__	__	__
4._CCN_51___	__	TT	__	__	__	__	__	__	AC	__	GG	__	__	__
5._CCN_51___	__	TT	__	__	__	__	__	__	AC	__	GG	__	__	__
6._CCN_51___	__	TT	__	__	__	__	__	__	AC	__	GG	__	__	__
7._CCN_51___	CT	TT	CT	TT	AC	GG	TT	CT	AC	TT	GG	AG	TT	CC
8._CCN_51___	__	TT	CT	__	AC	__	TT	__	AC	TT	GG	AG	TT	CC
9._CCN_51___	__	TT	CT	__	AC	__	TT	__	AC	TT	GG	AG	TT	CC
10._CCN_51___	__	TT	CT	__	AC	__	TT	__	AC	TT	GG	AG	TT	CC
11._CCN_51___	__	TT	CT	__	AC	__	TT	__	AC	TT	GG	AG	TT	CC
12._CCN_51___	__	TT	CT	__	AC	__	TT	__	AC	TT	GG	AG	TT	CC
13._CCN_51___	__	TT	CT	__	AC	__	TT	__	AC	TT	GG	AG	TT	CC
14._CCN_51___	__	TT	CT	__	AC	__	TT	__	AC	TT	GG	AG	TT	CC
15._CCN_51___	__	TT	CT	__	AC	__	TT	__	AC	TT	GG	AG	TT	CC
16._CCN_51___	CT	TT	CT	TT	AC	GG	TT	CT	AC	TT	GG	AG	TT	CC
17._CCN_51___	CT	TT	CT	TT	AC	GG	TT	CT	AC	TT	GG	AG	TT	CC
18._CCN_51___	CT	TT	CT	TT	AC	GG	TT	CT	AC	TT	GG	AG	TT	CC
19._CCN_51___	__	TT	CT	__	AC	__	TT	__	AC	TT	GG	AG	TT	CC
20._CCN_51___	__	TT	CT	__	AC	__	TT	__	AC	TT	GG	AG	TT	CC
21._CCN_51___	CT	TT	CT	TT	AC	GG	TT	CT	AC	TT	GG	AG	TT	CC
22._CCN_51___	CT	TT	CT	TT	AC	GG	TT	CT	AC	TT	GG	AG	TT	CC
23._CCN_51___	CT	TT	CT	TT	AC	GG	TT	CT	AC	TT	GG	AG	TT	CC
24._CCN_51___	CT	TT	CT	TT	AC	GG	TT	CT	AC	TT	GG	AG	TT	CC
25._CCN_51___	__	GG	CC	__	AA	__	TT	__	AA	TT	CC	GG	GG	TT

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AG	AT	AG	AA	CG	AA	GG	AG	GG	CC	TT	TT	AG	AG
1._CCN_51___	AG	AT	AG	AA	CG	AA	GG	AG	GG	CC	TT	TT	AG	AG
2._CCN_51___	AG	AT	AG	AA	CG	AA	GG	AG	GG	CC	TT	TT	AG	AG
3._CCN_51___	__	__	__	__	__	AA	__	__	__	__	__	__	AG	__
4._CCN_51___	__	__	__	__	__	AA	__	__	__	__	__	__	AG	__
5._CCN_51___	__	__	__	__	__	AA	__	__	__	__	__	__	AG	__
6._CCN_51___	__	__	__	__	__	AA	__	__	__	__	__	__	AG	__
7._CCN_51___	CT	AT	AG	AA	CG	AA	GG	CT	GG	GG	AA	TT	AG	AG
8._CCN_51___	CT	__	__	AA	CG	AA	__	CT	GG	__	__	TT	__	__
9._CCN_51___	CT	__	__	AA	CG	AA	__	CT	GG	__	__	TT	__	__
10._CCN_51___	CT	__	__	AA	CG	AA	__	CT	GG	__	__	TT	__	__
11._CCN_51___	CT	__	__	AA	CG	AA	__	CT	GG	__	__	TT	__	__
12._CCN_51___	CT	__	__	AA	CG	AA	__	CT	GG	__	__	TT	__	__
13._CCN_51___	CT	__	__	AA	CG	AA	__	CT	GG	__	__	TT	__	__
14._CCN_51___	CT	__	__	AA	CG	AA	__	CT	GG	__	__	TT	__	__
15._CCN_51___	CT	__	__	AA	CG	AA	__	CT	GG	__	__	TT	__	__
16._CCN_51___	CT	AT	AG	AA	CG	AA	GG	CT	GG	GG	AA	TT	AG	AG
17._CCN_51___	CT	AT	AG	AA	CG	AA	GG	CT	GG	GG	AA	TT	AG	AG
18._CCN_51___	CT	AT	AG	AA	CG	AA	GG	CT	GG	GG	AA	TT	AG	AG
19._CCN_51___	CT	__	__	AA	CG	AA	__	CT	GG	__	__	TT	__	__
20._CCN_51___	CT	__	__	AA	CG	AA	__	CT	GG	__	__	TT	__	__
21._CCN_51___	CT	__	AG	AA	CG	AA	__	CT	GG	GG	AA	TT	AG	AG
22._CCN_51___	CT	__	AG	AA	__	AA	__	CT	GG	GG	AA	TT	AG	AG
23._CCN_51___	CT	__	AG	AA	CG	AA	__	CT	GG	GG	AA	TT	AG	AG
24._CCN_51___	CT	__	AG	AA	CG	AA	__	CT	GG	GG	AA	TT	AG	AG
25._CCN_51___	CC	__	__	CC	GG	GG	__	TT	GG	__	__	AA	__	__

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	AA	AG	AG	GG	GG	AA	GG	AG	AC	AC	AG	AA	AG	CC
1._CCN_51___	AA	AG	AG	GG	GG	AA	GG	AG	AC	AC	AG	AA	AG	CC
2._CCN_51___	AA	AG	AG	GG	GG	AA	GG	AG	AC	AC	AG	AA	AG	CC
3._CCN_51___	__	__	__	__	__	__	__	__	__	__	__	__	__	CC
4._CCN_51___	__	__	__	__	__	__	__	__	__	AA	__	__	__	CC
5._CCN_51___	__	__	__	__	__	__	__	__	__	AA	__	__	__	CC
6._CCN_51___	__	__	__	__	__	__	__	__	__	AA	__	__	__	CC
7._CCN_51___	AA	CT	AG	GG	GG	AA	CC	__	AC	AC	AG	TT	AG	CC
8._CCN_51___	AA	__	__	__	GG	__	__	__	__	AC	__	TT	__	CC
9._CCN_51___	AA	__	__	__	GG	__	__	__	__	AC	__	TT	__	CC
10._CCN_51___	AA	__	__	__	GG	__	__	__	__	AC	__	TT	__	CC
11._CCN_51___	AA	__	__	__	GG	__	__	__	__	AC	__	TT	__	CC
12._CCN_51___	AA	__	__	__	GG	__	__	__	__	AC	__	TT	__	CC
13._CCN_51___	AA	__	__	__	GG	__	__	__	__	AC	__	TT	__	CC
14._CCN_51___	AA	__	__	__	GG	__	__	__	__	AC	__	TT	__	CC
15._CCN_51___	AA	__	__	__	GG	__	__	__	__	AC	__	TT	__	CC
16._CCN_51___	AA	CT	AG	GG	GG	AA	CC	__	AC	AC	AG	TT	AG	CC
17._CCN_51___	AA	CT	AG	GG	GG	AA	CC	__	AC	AC	AG	TT	AG	CC
18._CCN_51___	AA	CT	AG	GG	GG	AA	CC	__	AC	AC	AG	TT	AG	CC
19._CCN_51___	AA	__	__	__	GG	__	__	__	__	AC	__	TT	__	CC
20._CCN_51___	AA	__	__	__	GG	__	__	__	__	AC	__	TT	__	CC
21._CCN_51___	AA	CT	__	GG	GG	AA	CC	CT	AC	AC	AG	TT	AG	CC
22._CCN_51___	AA	CT	AG	GG	GG	AA	CC	CT	AC	AC	AG	TT	AG	CC
23._CCN_51___	AA	CT	AG	GG	GG	__	CC	CT	AC	AC	AG	TT	AG	CC
24._CCN_51___	AA	CT	AG	GG	GG	__	CC	CT	AC	AC	AG	TT	AG	CC
25._CCN_51___	TT	__	__	__	GG	__	__	__	__	CC	__	GG	__	CC

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	CC	AG	GG	AG	AG	AA	CC	GG	AA	AC	AC	AC	CC	CG
1._CCN_51___	CC	AG	GG	AG	AG	AA	CC	GG	AA	AC	AC	AC	CC	CG
2._CCN_51___	CC	AG	GG	AG	AG	AA	CC	GG	AA	AC	AC	AC	CC	CG
3._CCN_51___	CC	__	CC	__	__	__	GG	GG	__	__	__	__	CC	TT
4._CCN_51___	CC	__	CC	__	__	__	GG	GG	__	__	__	__	CC	TT
5._CCN_51___	CC	__	CC	__	__	__	GG	GG	__	__	__	__	CC	TT
6._CCN_51___	CC	__	CC	__	__	__	GG	GG	__	__	__	__	CC	TT
7._CCN_51___	CC	CT	CC	CT	AA	AG	GG	GG	TT	GT	GT	GT	CC	CG
8._CCN_51___	CC	__	__	CT	__	__	GG	__	__	__	__	__	__	__
9._CCN_51___	CC	__	__	CT	__	__	GG	__	__	__	__	__	__	__
10._CCN_51___	CC	__	__	CT	__	__	GG	__	__	__	__	__	__	__
11._CCN_51___	CC	__	__	CT	__	__	GG	__	__	__	__	__	__	__
12._CCN_51___	CC	__	__	CT	__	__	GG	__	__	__	__	__	__	__
13._CCN_51___	CC	__	__	CT	__	__	GG	__	__	__	__	__	__	__
14._CCN_51___	CC	__	__	CT	__	__	GG	__	__	__	__	__	__	__
15._CCN_51___	CC	__	__	CT	__	__	GG	__	__	__	__	__	__	__
16._CCN_51___	CC	CT	CC	CT	AA	AG	GG	GG	TT	GT	GT	GT	CC	CG
17._CCN_51___	CC	CT	CC	CT	AA	AG	GG	GG	TT	GT	GT	GT	CC	CG
18._CCN_51___	CC	CT	CC	CT	AA	AG	GG	GG	TT	GT	GT	GT	CC	CG
19._CCN_51___	__	__	__	CT	__	__	GG	__	__	__	__	__	__	__
20._CCN_51___	CC	__	__	CT	__	__	GG	__	__	__	__	__	__	__
21._CCN_51___	__	CT	CC	CT	AA	AG	GG	GG	TT	GT	GT	GT	CC	CG
22._CCN_51___	CC	CT	CC	CT	AA	AG	GG	GG	TT	GT	GT	GT	CC	CG
23._CCN_51___	CC	CT	CC	CT	AA	AG	GG	GG	TT	GT	GT	GT	CC	CG
24._CCN_51___	CC	CT	CC	CT	AA	AG	GG	GG	__	GT	GT	GT	CC	CG
25._CCN_51___	CC	__	__	CC	__	__	TT	__	__	__	__	__	__	__

	71	72	73	74	75	76	77	78	79	80	81	82
_Input profile	AG	GG	GG	GG	AG	AC	AG	GG	AG	AA	AA	AA	X_X	X_X
1._CCN_51___	AG	GG	GG	GG	AG	AC	AG	GG	AG	AA	AA	AA	X_X	X_X
2._CCN_51___	AG	GG	GG	GG	AG	AC	AG	GG	AG	AA	AA	AA	X_X	X_X
3._CCN_51___	__	CC	__	__	AG	__	__	__	__	__	__	AA	X_X	X_X
4._CCN_51___	__	CC	__	__	AG	__	__	__	__	__	__	AA	X_X	X_X
5._CCN_51___	__	CC	__	__	AG	__	__	__	__	__	__	AA	X_X	X_X
6._CCN_51___	__	CC	__	__	AG	__	__	__	__	__	__	AA	X_X	X_X
7._CCN_51___	AA	CC	CC	CC	AG	AC	CT	GG	CT	AA	TT	AA	X_X	X_X
8._CCN_51___	__	CC	CC	__	__	__	CT	GG	__	AA	TT	AA	X_X	X_X
9._CCN_51___	__	CC	CC	__	__	__	CT	GG	__	AA	TT	AA	X_X	X_X
10._CCN_51___	__	CC	CC	__	__	__	CT	GG	__	AA	TT	AA	X_X	X_X
11._CCN_51___	__	CC	CC	__	__	__	CT	GG	__	AA	TT	AA	X_X	X_X
12._CCN_51___	__	CC	CC	__	__	__	CT	GG	__	AA	TT	AA	X_X	X_X
13._CCN_51___	__	CC	CC	__	__	__	CT	GG	__	AA	TT	AA	X_X	X_X
14._CCN_51___	__	CC	CC	__	__	__	CT	GG	__	AA	CT	AA	X_X	X_X
15._CCN_51___	__	CC	CC	__	__	__	CT	GG	__	AA	CT	AA	X_X	X_X
16._CCN_51___	AA	CC	CC	CC	AG	AC	CT	GG	CT	AA	TT	AA	X_X	X_X
17._CCN_51___	AA	CC	CC	CC	AG	AC	CT	GG	CT	AA	TT	AA	X_X	X_X
18._CCN_51___	AA	CC	CC	CC	AG	AC	CT	GG	CT	AA	TT	AA	X_X	X_X
19._CCN_51___	__	__	CC	__	__	__	CT	GG	__	AA	TT	AA	X_X	X_X
20._CCN_51___	__	CC	CC	__	__	__	CT	__	__	AA	TT	AA	X_X	X_X
21._CCN_51___	AA	__	CC	CC	AG	AC	CT	GG	CT	AA	TT	AA	X_X	X_X
22._CCN_51___	AA	CC	CC	CC	AG	AC	CT	GG	CT	AA	TT	AA	X_X	X_X
23._CCN_51___	AA	CC	CC	CC	AG	AC	CT	GG	CT	AA	TT	AA	X_X	X_X
24._CCN_51___	AA	CC	CC	CC	AG	AC	CT	__	CT	AA	TT	AA	X_X	X_X
25._CCN_51___	__	CC	CC	__	__	__	TT	GG	__	AA	CC	AA	X_X	X_X

Input profile: CCN_51 MITC-000000

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USDA-SHRS, United States of America

1._CCN_51 GC-07-19-1-21

identical
82 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 7, Block: 1, Rep: 21, Tree: 3 > FP1

2._CCN_51 RUQ_1736

identical
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

3._CCN_51 RUQ_1737B

62.5 %
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

4._CCN_51 RUQ_1736

61.8 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Ame
0.275 Cri
0.293 IMC
0.424

5._CCN_51 RUQ_1737

61.8 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

6._CCN_51 RUQ_1737C

61.8 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

7._CCN_51 GC-07-019-1-21

51.9 %
80 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 14

8._CCN_51

51.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7121 10

Dapeng Zhang, 2016

9._CCN_51

51.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7121 12

Dapeng Zhang, 2016

10._CCN_51

51.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7121 13

Dapeng Zhang, 2016

11._CCN_51

51.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7121 14

Dapeng Zhang, 2016

12._CCN_51

51.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7121 3 > FP

Dapeng Zhang, 2016

13._CCN_51

51.4 %
35 shared markers

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Estation Experimental Tropical Pichilingue, Ecuador

Dapeng Zhang, 2016

14._CCN_51

51.4 %
35 shared markers

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USAPEN

Dapeng Zhang, 2016

15._CCN_51

51.4 %
35 shared markers

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USASPC

Dapeng Zhang, 2016

16._CCN_51 GC-07-019-1-21

51.2 %
81 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 13

17._CCN_51 GC-07-019-1-21

51.2 %
81 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 12

18._CCN_51 GC-07-019-1-21

51.2 %
81 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 10

19._CCN_51

50 %
32 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7121 6 > FP

Dapeng Zhang, 2016

20._CCN_51

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7121 4 > FP

Dapeng Zhang, 2016

21._CCN_51 GC-07-019-1-21

49.3 %
74 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 7, Block: 1, Rep: 21, Tree: PL6

Notes: PL6 FP4

22._CCN_51 GC-06-4-1-04

48.7 %
79 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 6, Block: 1, Rep: 4, Tree: PL7

Notes: PL7 FP

23._CCN_51 GC-07-019-1-21

48.7 %
79 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 7, Block: 1, Rep: 21, Tree: PL3

Notes: PL3 FP1

24._CCN_51 GC-07-019-1-21

48.7 %
77 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 7, Block: 1, Rep: 21, Tree: PL4

Notes: PL4 FP2

25._CCN_51

34.3 %
35 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	Tcm001s00947643	2	Tcm003s01336581	3	Tcm003s07402719	4	Tcm006s26664133	5	TcSNP1034
6	TcSNP1060	7	TcSNP1062	8	TcSNP1063	9	TcSNP1075	10	TcSNP1096
11	TcSNP1111	12	TcSNP1149	13	TcSNP1156	14	TcSNP1175	15	TcSNP122
16	TcSNP1253	17	TcSNP1270	18	TcSNP1309	19	TcSNP1350	20	TcSNP1383
21	TcSNP1414	22	TcSNP1439	23	TcSNP144	24	TcSNP1442	25	TcSNP1458
26	TcSNP1484	27	TcSNP150	28	TcSNP151	29	TcSNP1520	30	TcSNP154
31	TcSNP174	32	TcSNP193	33	TcSNP226	34	TcSNP230	35	TcSNP240
36	TcSNP242	37	TcSNP25	38	TcSNP28	39	TcSNP316	40	TcSNP32
41	TcSNP329	42	TcSNP364	43	TcSNP372	44	TcSNP413	45	TcSNP418
46	TcSNP42	47	TcSNP429	48	TcSNP430	49	TcSNP448	50	TcSNP497
51	TcSNP521	52	TcSNP529	53	TcSNP547	54	TcSNP560	55	TcSNP561
56	TcSNP577	57	TcSNP591	58	TcSNP60	59	TcSNP602	60	TcSNP619
61	TcSNP653	62	TcSNP689	63	TcSNP723	64	TcSNP731	65	TcSNP75
66	TcSNP751	67	TcSNP776	68	TcSNP799	69	TcSNP823	70	TcSNP836
71	TcSNP860	72	TcSNP872	73	TcSNP891	74	TcSNP894	75	TcSNP899
76	TcSNP90	77	TcSNP917	78	TcSNP929	79	TcSNP944	80	TcSNP953
81	TcSNP994	82	TcSNP998